AT1G12100

Hydrophobic seed protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4095246 .. 4095883
638 bp
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UTR
Exon/CDS
Intron
AT1G12100.1

Sequence Viewer

Length: 399 bp
ATGACGTTTTACAAAAAAAACTCTGAAGCTCTCTTCATATCTTTTAATCTCATGTTTTTTGCGCATGTTAGTGGCTGCAACACTTGCTTTCCACCTACCCCAATTCCTAACCTTAACCCTATCAGCAATCCTACAACGCCTAGTTGCTCAAGAGACGCCATAAAACTTGGAGTTTGCGCCAAAATACTAGACGTTGCAGTCGGAACTGTCATTGGAAACCCATCCGACACGCTTTGCTGCTCAGTTCTTCAAGGGCTTGTCGATCTTGATGCTGCCGTATGTCTTTGCACCACCATTAAAGCTAACATTCTCGGGATTAACATCGACCTTCCCATCTCGTTGAGTTTGCTCATCAATACTTGCGGCAAAAAGCTTCCCTCTGATTGCATTTGCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

13.91

Weight (kDa)

6.49

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 49 - 131 1.3e-19 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 49 - 129 1.2e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014899)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
Acc16I TGCGCA 1 cut(s) 63
AciI CCGC 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 156
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 3 cut(s) 29, 302, 373
AluI AGCT 3 cut(s) 29, 302, 373
Alw26I GTCTC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 75, 237, 272
AspLEI GCGC 3 cut(s) 64, 179, 395
AvaI CYCGRG 1 cut(s) 311
BbvI GCAGC 3 cut(s) 62, 224, 259
BccI CCATC 2 cut(s) 229, 341
BceAI ACGGC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 141, 188
BisI GCNGC 4 cut(s) 76, 238, 273, 364
BlsI GCNGC 4 cut(s) 77, 239, 274, 365
BmeT110I CYCGRG 1 cut(s) 311
BmsI GCATC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 320
BseGI GGATG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 320
BseMII CTCAG 1 cut(s) 255
BseXI GCAGC 3 cut(s) 62, 224, 259
BsiHKCI CYCGRG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 254
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 221
BstHHI GCGC 3 cut(s) 64, 179, 395
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 62, 224, 259
BtsCI GGATG 1 cut(s) 221
CfoI GCGC 3 cut(s) 64, 179, 395
CseI GACGC 1 cut(s) 164
CviAII CATG 2 cut(s) 52, 65
CviJI RGCY 5 cut(s) 29, 75, 256, 302, 373
CviKI_1 RGCY 5 cut(s) 29, 75, 256, 302, 373
DdeI CTNAG 1 cut(s) 241
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 55, 68
FaiI YATR 5 cut(s) 38, 53, 66, 161, 280
FatI CATG 2 cut(s) 51, 64
Fnu4HI GCNGC 4 cut(s) 76, 238, 273, 364
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 4 cut(s) 76, 238, 273, 364
FspBI CTAG 2 cut(s) 141, 188
FspI TGCGCA 1 cut(s) 63
GlaI GCGC 3 cut(s) 63, 178, 394
GluI GCNGC 4 cut(s) 76, 238, 273, 364
HgaI GACGC 1 cut(s) 164
HhaI GCGC 3 cut(s) 64, 179, 395
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 55, 68
Hin6I GCGC 3 cut(s) 62, 177, 393
HinP1I GCGC 3 cut(s) 62, 177, 393
HindIII AAGCTT 1 cut(s) 371
Hpy188I TCNGA 4 cut(s) 25, 203, 226, 382
Hpy188III TCNNGA 3 cut(s) 150, 266, 313
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 2 cut(s) 5, 192
HpyCH4V TGCA 4 cut(s) 78, 197, 288, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 2 cut(s) 5, 192
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 55, 68
HspAI GCGC 3 cut(s) 62, 177, 393
Kzo9I GATC 1 cut(s) 262
Lsp1109I GCAGC 3 cut(s) 62, 224, 259
LweI GCATC 1 cut(s) 259
MaeI CTAG 2 cut(s) 141, 188
MaeII ACGT 2 cut(s) 5, 192
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 25, 239
MluCI AATT 1 cut(s) 102
MmeI TCCRAC 2 cut(s) 181, 249
MnlI CCTC 1 cut(s) 388
MseI TTAA 4 cut(s) 45, 114, 297, 318
MslI CAYNNNNRTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 1 cut(s) 262
NlaIII CATG 2 cut(s) 55, 68
NsbI TGCGCA 1 cut(s) 63
NspI RCATGY 1 cut(s) 68
PkrI GCNGC 4 cut(s) 77, 239, 274, 365
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 4 cut(s) 45, 114, 297, 318
SatI GCNGC 4 cut(s) 76, 238, 273, 364
Sau3AI GATC 1 cut(s) 262
SetI ASST 8 cut(s) 8, 31, 97, 114, 195, 304, 330, 375
SfaNI GCATC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 363
SspMI CTAG 2 cut(s) 141, 188
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 2 cut(s) 8, 195
TaqI TCGA 2 cut(s) 261, 324
TasI AATT 1 cut(s) 102
TauI GCSGC 1 cut(s) 366
Tru1I TTAA 4 cut(s) 45, 114, 297, 318
Tru9I TTAA 4 cut(s) 45, 114, 297, 318
TseI GCWGC 3 cut(s) 75, 237, 272
TspDTI ATGAA 1 cut(s) 25
XceI RCATGY 1 cut(s) 68
XspI CTAG 2 cut(s) 141, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.