MD04G1086500.v1.1

14 kDa proline-rich protein DC2.15-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
12600404 .. 12600814
411 bp
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UTR
Exon/CDS
Intron
MD04G1086500.v1.1.491

Sequence Viewer

Length: 411 bp
ATGAATTCCAAAACATCTTCAACCCTTGCTCTATTCCTCTCTATCAACCTTCTCTTTTGTGTCCTTGCAAGTGGCTGTTACACTTGTTCTCAGCAGCCTCATCAGCCAATCAGAAACCCTAGACCAAACCCAATTCCAAGTGCTTCCCCGAAGAGCTGCCCCAGAGATAGCCTAAAGTTGGGGGTTTGTGCCAAGTTGCTCAATGGGGCAGTTGGGGCAGTTGTTGGGAACCCACCAGATCACCCTTGTTGTGCTTTGCTTGAAGGTCTTGTTGACCTTGAAGTTGCTGTGTGCCTCTGCACTGCCATTAAGGCCAACATTCTTGGTATCAACCTTAACATCCCCATTGCTTTGAGCTTGGTGATTGATGGTTGTGCGAAGAATGTCCCCGAGGGCTTCAAATGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

14.12

Weight (kDa)

8.32

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 53 - 136 1.4e-23 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 53 - 135 2.2e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014899)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 4 cut(s) 21, 263, 281, 400
AluBI AGCT 2 cut(s) 156, 357
AluI AGCT 2 cut(s) 156, 357
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 94, 156
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 233, 373
AvaI CYCGRG 1 cut(s) 389
BbvI GCAGC 2 cut(s) 106, 143
BccI CCATC 1 cut(s) 362
BfaI CTAG 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 2 cut(s) 95, 157
BlsI GCNGC 2 cut(s) 96, 158
BmeT110I CYCGRG 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 106, 143
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 389
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 103, 215, 311
BstV1I GCAGC 2 cut(s) 106, 143
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 339
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
CviJI RGCY 8 cut(s) 75, 97, 106, 156, 171, 314, 357, 396
CviKI_1 RGCY 8 cut(s) 75, 97, 106, 156, 171, 314, 357, 396
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 4
FaiI YATR 1 cut(s) 409
FaqI GGGAC 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 95, 157
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 2 cut(s) 95, 157
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 95, 157
HaeIII GGCC 1 cut(s) 314
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HphI GGTGA 2 cut(s) 233, 373
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 59, 257
HpyCH4V TGCA 3 cut(s) 68, 300, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 215, 311
HpyF3I CTNAG 1 cut(s) 90
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 146
LpnPI CCDG 2 cut(s) 175, 249
Lsp1109I GCAGC 2 cut(s) 106, 143
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 3 cut(s) 9, 163, 391
MluCI AATT 2 cut(s) 4, 132
MnlI CCTC 4 cut(s) 47, 108, 305, 385
MseI TTAA 2 cut(s) 309, 336
MwoI GCNNNNNNNGC 3 cut(s) 103, 215, 311
NdeII GATC 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 96, 158
PspN4I GGNNCC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 309, 336
SatI GCNGC 2 cut(s) 95, 157
Sau3AI GATC 1 cut(s) 238
SetI ASST 6 cut(s) 51, 158, 268, 279, 336, 359
Sse9I AATT 2 cut(s) 4, 132
SspMI CTAG 1 cut(s) 120
TasI AATT 2 cut(s) 4, 132
Tru1I TTAA 2 cut(s) 309, 336
Tru9I TTAA 2 cut(s) 309, 336
TscAI CASTG 1 cut(s) 307
TseI GCWGC 2 cut(s) 94, 156
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 307
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.