MD06G1062200.v1.1

14 kDa proline-rich protein DC2.15-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
10139920 .. 10140330
411 bp
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UTR
Exon/CDS
Intron
MD06G1062200.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGATTCCAAAAGTTCTTCAACCCTTGCTCTATTCCTCTCTGTCAACCTTCTCTTTTGTGTGCTTGCAAGTGGCTGTTACACTTGTCCTCAGCACCCTCATCAGCCAATGACAAACCCTAAACCAAACCCAATTCCAAGTGCTGCCCCAAAGAGCTGCCCGAGAGATAGCCTAAAATTGGGGGTTTGTGCCAAGTTGCTTAATCGGGCAGTTGGGGCAGTTGTTGGGAACCCACCAGATCACCCTTGTTGTGCTTTGCTTGAAGGGCTTGTTGAGCTTGAAGTTGCTGTGTGCCTCTGCACTGCCATTAAAGCCAACATCCTTGGTATCAACCTTAACATTCCCATTGCTTTGAGCTTGATCATTGATGGTTGTGCAAAGAATGTCCCTTCGGGCTTCAAATGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

14.12

Weight (kDa)

8.31

Isoelectric Point (pI)

28.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 53 - 136 7.3e-23 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 53 - 135 2.6e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014899)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 4 cut(s) 21, 263, 281, 400
AluBI AGCT 3 cut(s) 156, 277, 357
AluI AGCT 3 cut(s) 156, 277, 357
Ama87I CYCGRG 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 143, 156
AsuHPI GGTGA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 160
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 130, 143
BccI CCATC 1 cut(s) 362
BclI TGATCA 1 cut(s) 360
BisI GCNGC 2 cut(s) 144, 157
BlsI GCNGC 2 cut(s) 145, 158
BmeT110I CYCGRG 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 130, 143
BsgI GTGCAG 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 160
Bsp143I GATC 2 cut(s) 238, 360
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 2 cut(s) 238, 360
BssT1I CCWWGG 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 2 cut(s) 241, 363
BstMBI GATC 2 cut(s) 238, 360
BstMWI GCNNNNNNNGC 4 cut(s) 215, 265, 274, 311
BstV1I GCAGC 2 cut(s) 130, 143
BtsCI GGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 66
CviJI RGCY 9 cut(s) 75, 106, 156, 171, 268, 277, 314, 357, 396
CviKI_1 RGCY 9 cut(s) 75, 106, 156, 171, 268, 277, 314, 357, 396
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 240, 362
DpnII GATC 2 cut(s) 238, 360
Eco130I CCWWGG 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaiI YATR 1 cut(s) 409
FaqI GGGAC 1 cut(s) 371
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 144, 157
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 144, 157
GluI GCNGC 2 cut(s) 144, 157
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 3 cut(s) 59, 257, 399
HpyCH4V TGCA 4 cut(s) 68, 300, 377, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 265, 274, 311
HpyF3I CTNAG 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 2 cut(s) 238, 360
LpnPI CCDG 1 cut(s) 249
Lsp1109I GCAGC 2 cut(s) 130, 143
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 240, 362
MboI GATC 2 cut(s) 238, 360
MboII GAAGA 1 cut(s) 9
MluCI AATT 2 cut(s) 132, 176
MnlI CCTC 4 cut(s) 47, 99, 108, 305
MseI TTAA 3 cut(s) 201, 309, 336
MwoI GCNNNNNNNGC 4 cut(s) 215, 265, 274, 311
NdeII GATC 2 cut(s) 238, 360
NlaIV GGNNCC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 145, 158
PspN4I GGNNCC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 201, 309, 336
SatI GCNGC 2 cut(s) 144, 157
Sau3AI GATC 2 cut(s) 238, 360
SetI ASST 5 cut(s) 51, 158, 279, 336, 359
Sse9I AATT 2 cut(s) 132, 176
StyI CCWWGG 1 cut(s) 322
TasI AATT 2 cut(s) 132, 176
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 3 cut(s) 201, 309, 336
Tru9I TTAA 3 cut(s) 201, 309, 336
TscAI CASTG 1 cut(s) 307
TseI GCWGC 2 cut(s) 143, 156
TspRI CASTG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.