Rmu_sc0003429.1_g000002

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003429.1
OG0014899
Physical Location & Seq
Reverse (-)
8644 .. 9063
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003429.1_g000002.1.cds

Sequence Viewer

Length: 420 bp
atggattccaagagatgttccaccattgctctcttcctctccatcaaccttctcttttgtgccctagcaagtggttgttacacttgctctcagcctcatcccatcacaacacctaagccaatcaaaacccctattcccagtgccggttctgctgccacaaagagctgccctagggataccctaaagttgggggtatgtgccaagttgctgaatggggcggttggggcagttgttgggagccctccggatacaccttgctgtgctgtccttgatggacttctggatcttgaagttgctgtgtgcctttgcactgccattaaggccaacattctgggtatcaaccttaacatccctatttcgttgagcttgctccttgacggctgcgcaaagaagttccctccaggcttccaatgtgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

139

Amino Acids

14.24

Weight (kDa)

8.47

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12100
fragaria_vesca FvH4_5g00130
malus_domestica MD04G1086500.v1.1 MD06G1062200.v1.1
prunus_persica Prupe.5G073500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202771
rosa_laevigata RLG00000003573
rosa_multiflora Rmu_sc0002590.1_g000010 Rmu_sc0003429.1_g000002
rosa_roxburghii Rroxscaffold_3G00254290
rosa_rugosa Rorug07G0073100
rosa_samantha Rh7AG200600 Rh7BG201100 Rh7CG212000 Rh7DG207700
rosa_wichuraiana Rw7G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 385
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 143, 187
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 2 cut(s) 165, 366
AluI AGCT 2 cut(s) 165, 366
AlwI GGATC 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 3 cut(s) 152, 165, 381
AspA2I CCTAGG 1 cut(s) 170
AspLEI GCGC 1 cut(s) 386
AvrII CCTAGG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 139, 152, 368
BccI CCATC 3 cut(s) 50, 110, 266
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 2 cut(s) 169, 241
BfaI CTAG 2 cut(s) 65, 171
BfuI GTATCC 2 cut(s) 169, 241
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 3 cut(s) 153, 166, 382
BlnI CCTAGG 1 cut(s) 170
BlsI GCNGC 3 cut(s) 154, 167, 383
Bme1390I CCNGG 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 402
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 187
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 97, 348
BseLI CCNNNNNNNGG 2 cut(s) 143, 187
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 3 cut(s) 139, 152, 368
BshFI GGCC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 144, 245
BslI CCNNNNNNNGG 2 cut(s) 143, 187
BsnI GGCC 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 64, 242
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 90, 114
BstF5I GGATG 2 cut(s) 97, 348
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 149, 224, 320
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 3 cut(s) 139, 152, 368
BstX2I RGATCY 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 331
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 2 cut(s) 169, 241
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 97, 348
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 145, 309
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 143
CviJI RGCY 8 cut(s) 94, 118, 165, 240, 323, 366, 381, 405
CviKI_1 RGCY 8 cut(s) 94, 118, 165, 240, 323, 366, 381, 405
DdeI CTNAG 2 cut(s) 90, 114
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 170
FaiI YATR 2 cut(s) 196, 418
Fnu4HI GCNGC 3 cut(s) 153, 166, 382
FokI GGATG 2 cut(s) 84, 335
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 153, 166, 382
FspBI CTAG 2 cut(s) 65, 171
FspI TGCGCA 1 cut(s) 385
GlaI GCGC 1 cut(s) 385
GluI GCNGC 3 cut(s) 153, 166, 382
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 1 cut(s) 323
HapII CCGG 2 cut(s) 144, 245
HhaI GCGC 1 cut(s) 386
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 1 cut(s) 5
HpaII CCGG 2 cut(s) 144, 245
Hpy188III TCNNGA 3 cut(s) 245, 281, 287
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 309, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 224, 320
HpyF3I CTNAG 2 cut(s) 90, 114
HspAI GCGC 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 237, 375
LpnPI CCDG 7 cut(s) 151, 157, 258, 266, 317, 387, 414
Lsp1109I GCAGC 3 cut(s) 139, 152, 368
MaeI CTAG 2 cut(s) 65, 171
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 64, 242
MnlI CCTC 4 cut(s) 47, 105, 252, 408
MroI TCCGGA 1 cut(s) 244
MseI TTAA 2 cut(s) 318, 345
MspI CCGG 2 cut(s) 144, 245
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 3 cut(s) 149, 224, 320
NdeII GATC 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 239
NsbI TGCGCA 1 cut(s) 385
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 154, 167, 383
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 283
SaqAI TTAA 2 cut(s) 318, 345
SatI GCNGC 3 cut(s) 153, 166, 382
Sau3AI GATC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 2 cut(s) 64, 242
SetI ASST 6 cut(s) 51, 115, 167, 256, 345, 368
SsiI CCGC 1 cut(s) 218
SspMI CTAG 2 cut(s) 65, 171
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 170
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 318, 345
Tru9I TTAA 2 cut(s) 318, 345
TscAI CASTG 2 cut(s) 145, 316
TseI GCWGC 3 cut(s) 152, 165, 381
TspRI CASTG 2 cut(s) 145, 316
XmaJI CCTAGG 1 cut(s) 170
XspI CTAG 2 cut(s) 65, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.