Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014899

Physical Location & Seq

Genomic Coordinates Reverse (-)

19768903 .. 19769364

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG207700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATTCCAAGAGATGTTCCACCATTGCTCTCTTCCTCTCCATCAACCTTCTCTTTTGTGCCCTAGCAAGTGGTTGTTACACTTGCTCTCAGCCTCATCCCATCACAACACCTAAGCCAATCAAAACCCCTATTCCCAGTGCCGGTTCTGCTGCCACAAAGAGCTGCCCTAGGGATACCCTAAAGTTGGGGGTATGTGCCAAGTTGCTGAATGGGGCGGTTGGGGCAGTTGTCGGGAGCCCTCCGGATACACCTTGCTGTGCTGTCCTTGATGGACTTCTGGATCTTGAAGTTGCTGTGTGCCTTTGCACTGCCATTAAGGCCAACATTCTGGGTATCAACCTTAACATCCCTATTTCGTTGAGCTTGCTCCTTGACGGCTGTGCAAAGAAGTTCCCTCCAGGCTTCCAATGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

139

Amino Acids

14.24

Weight (kDa)

8.47

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	56 - 139	3.8e-23	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	56 - 138	6.8e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12100
fragaria_vesca	FvH4_5g00130
malus_domestica	MD04G1086500.v1.1 MD06G1062200.v1.1
prunus_persica	Prupe.5G073500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202771
rosa_laevigata	RLG00000003573
rosa_multiflora	Rmu_sc0002590.1_g000010 Rmu_sc0003429.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254290
rosa_rugosa	Rorug07G0073100
rosa_samantha	Rh7AG200600 Rh7BG201100 Rh7CG212000 Rh7DG207700
rosa_wichuraiana	Rw7G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	143, 187
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	2 cut(s)	165, 366
AluI	AGCT	2 cut(s)	165, 366
AlwI	GGATC	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	152, 165
AspA2I	CCTAGG	1 cut(s)	170
AvrII	CCTAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	139, 152
BccI	CCATC	3 cut(s)	50, 110, 266
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	402
BciVI	GTATCC	2 cut(s)	169, 241
BfaI	CTAG	2 cut(s)	65, 171
BfuI	GTATCC	2 cut(s)	169, 241
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	153, 166
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	2 cut(s)	154, 167
Bme1390I	CCNGG	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	402
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 187
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	97, 348
BseLI	CCNNNNNNNGG	2 cut(s)	143, 187
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	139, 152
BshFI	GGCC	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	144, 245
BslI	CCNNNNNNNGG	2 cut(s)	143, 187
BsnI	GGCC	1 cut(s)	323
Bsp1286I	GDGCHC	2 cut(s)	64, 242
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	90, 114
BstF5I	GGATG	2 cut(s)	97, 348
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 224, 320
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	139, 152
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	2 cut(s)	169, 241
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	97, 348
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	145, 309
Cac8I	GCNNGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	143
CviJI	RGCY	8 cut(s)	94, 118, 165, 240, 323, 366, 381, 405
CviKI_1	RGCY	8 cut(s)	94, 118, 165, 240, 323, 366, 381, 405
DdeI	CTNAG	2 cut(s)	90, 114
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	170
FaiI	YATR	2 cut(s)	196, 418
Fnu4HI	GCNGC	2 cut(s)	153, 166
FokI	GGATG	2 cut(s)	84, 335
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	153, 166
FspBI	CTAG	2 cut(s)	65, 171
GluI	GCNGC	2 cut(s)	153, 166
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	2 cut(s)	144, 245
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	144, 245
Hpy188III	TCNNGA	4 cut(s)	235, 245, 281, 287
HpyAV	CCTTC	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	309, 386, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 224, 320
HpyF3I	CTNAG	2 cut(s)	90, 114
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	237, 375
LpnPI	CCDG	7 cut(s)	151, 157, 258, 266, 317, 387, 414
Lsp1109I	GCAGC	2 cut(s)	139, 152
MaeI	CTAG	2 cut(s)	65, 171
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	64, 242
MnlI	CCTC	4 cut(s)	47, 105, 252, 408
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	2 cut(s)	318, 345
MspI	CCGG	2 cut(s)	144, 245
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	149, 224, 320
NdeII	GATC	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	154, 167
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	318, 345
SatI	GCNGC	2 cut(s)	153, 166
Sau3AI	GATC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	2 cut(s)	64, 242
SetI	ASST	6 cut(s)	51, 115, 167, 256, 345, 368
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	2 cut(s)	65, 171
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	318, 345
Tru9I	TTAA	2 cut(s)	318, 345
TscAI	CASTG	2 cut(s)	145, 316
TseI	GCWGC	2 cut(s)	152, 165
TspRI	CASTG	2 cut(s)	145, 316
XmaJI	CCTAGG	1 cut(s)	170
XspI	CTAG	2 cut(s)	65, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.