Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014899

Physical Location & Seq

Genomic Coordinates Forward (+)

74855 .. 75916

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATTCCAAGAGATGTTCCACCATTGCTCTCTTCCTCTCCATCAACCTTCTGCTTTCTGCCCTAACAAGTGGTTGTTACACTTGCTCTCAGCCTCATCCCATCACAACACCTAAGCCAATCACAAACCCTATTCCCGGAGCCGCAAAGAGCTGCCCTAGGGATACCCTAAAGTTGGGGGTATGCGCCAAGTTGCTGAATGGGGCGGTTGGGGCCGTTGTAGGAAGCCCTCCGGATACACCTTGCTGTGCTGTCCTTGAGGGGCTGGTGGATCTTGAAGTTGCTGTGTGCCTTTGCACTGCCATTAAGGCCAACATTCTGGGTATCAACCTTAACATCCCTGTTTCGTTGAGCTTGCTCCTAGACGGTTGCGCAAAGAAGTTCCCTTCAGGCTTCCAATGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

136

Amino Acids

13.84

Weight (kDa)

8.31

Isoelectric Point (pI)

25.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	46 - 134	2.1e-07	Probable lipid transfer
Hydrophob_seed	PF14547	52 - 135	2.6e-23	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	52 - 134	6.8e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12100
fragaria_vesca	FvH4_5g00130
malus_domestica	MD04G1086500.v1.1 MD06G1062200.v1.1
prunus_persica	Prupe.5G073500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202771
rosa_laevigata	RLG00000003573
rosa_multiflora	Rmu_sc0002590.1_g000010 Rmu_sc0003429.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254290
rosa_rugosa	Rorug07G0073100
rosa_samantha	Rh7AG200600 Rh7BG201100 Rh7CG212000 Rh7DG207700
rosa_wichuraiana	Rw7G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	373
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	2 cut(s)	144, 206
AclWI	GGATC	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	137, 175
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	2 cut(s)	153, 354
AluI	AGCT	2 cut(s)	153, 354
AlwI	GGATC	1 cut(s)	279
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	2 cut(s)	213, 309
ApeKI	GCWGC	1 cut(s)	153
AspA2I	CCTAGG	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	188, 374
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	138
AvrII	CCTAGG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	50, 110
BceAI	ACGGC	1 cut(s)	200
BciVI	GTATCC	2 cut(s)	157, 229
BcnI	CCSGG	1 cut(s)	138
BfaI	CTAG	2 cut(s)	159, 362
BfuI	GTATCC	2 cut(s)	157, 229
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	2 cut(s)	144, 154
BlnI	CCTAGG	1 cut(s)	158
BlsI	GCNGC	2 cut(s)	145, 155
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	142, 214
BmrFI	CCNGG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 175
Bse3DI	GCAATG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	97, 336
BseLI	CCNNNNNNNGG	2 cut(s)	137, 175
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	140
BshFI	GGCC	2 cut(s)	215, 311
BsiSI	CCGG	2 cut(s)	138, 233
BslI	CCNNNNNNNGG	2 cut(s)	137, 175
BsnI	GGCC	2 cut(s)	215, 311
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	144, 206
BspANI	GGCC	2 cut(s)	215, 311
BspCNI	CTCAG	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	142, 214
BspPI	GGATC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	90, 114
BstF5I	GGATG	2 cut(s)	97, 336
BstHHI	GCGC	2 cut(s)	188, 374
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 308
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	271
BsuI	GTATCC	2 cut(s)	157, 229
BsuRI	GGCC	2 cut(s)	215, 311
BtsCI	GGATG	2 cut(s)	97, 336
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	2 cut(s)	188, 374
Cfr13I	GGNCC	1 cut(s)	213
DdeI	CTNAG	2 cut(s)	90, 114
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaiI	YATR	2 cut(s)	184, 406
Fnu4HI	GCNGC	2 cut(s)	144, 154
FokI	GGATG	2 cut(s)	84, 323
Fsp4HI	GCNGC	2 cut(s)	144, 154
FspBI	CTAG	2 cut(s)	159, 362
FspI	TGCGCA	1 cut(s)	373
GlaI	GCGC	2 cut(s)	187, 373
GluI	GCNGC	2 cut(s)	144, 154
HaeIII	GGCC	2 cut(s)	215, 311
HapII	CCGG	2 cut(s)	138, 233
HhaI	GCGC	2 cut(s)	188, 374
Hin6I	GCGC	2 cut(s)	186, 372
HinP1I	GCGC	2 cut(s)	186, 372
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	138, 233
Hpy188III	TCNNGA	2 cut(s)	233, 275
HpyAV	CCTTC	2 cut(s)	59, 396
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	297, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 308
HpyF3I	CTNAG	2 cut(s)	90, 114
HspAI	GCGC	2 cut(s)	186, 372
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	140, 363
LpnPI	CCDG	6 cut(s)	151, 246, 251, 305, 354, 375
Lsp1109I	GCAGC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	159, 362
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	271
MnlI	CCTC	4 cut(s)	47, 105, 240, 253
MroI	TCCGGA	1 cut(s)	232
MseI	TTAA	2 cut(s)	306, 333
MspI	CCGG	2 cut(s)	138, 233
MspR9I	CCNGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	212, 308
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	142, 214
NsbI	TGCGCA	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	145, 155
PspN4I	GGNNCC	2 cut(s)	142, 214
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	306, 333
SatI	GCNGC	2 cut(s)	144, 154
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	6 cut(s)	51, 115, 155, 244, 333, 356
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	2 cut(s)	144, 206
SspMI	CTAG	2 cut(s)	159, 362
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	368
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	306, 333
Tru9I	TTAA	2 cut(s)	306, 333
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	153
TspRI	CASTG	1 cut(s)	304
XmaJI	CCTAGG	1 cut(s)	158
XspI	CTAG	2 cut(s)	159, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.