Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015215

Physical Location & Seq

Genomic Coordinates Forward (+)

4276505 .. 4277969

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGTCCAATCTCAAGTTCTTGGAGCTTTAACAAATTCTTCTCAATAGTTTTCGTTGTTTTCGCCATCTCCGGCGAGTTCGTCGCTGGATACTATCGACCAGGCCCATGGAGATATGCTCACGCCACTTTCTACGGTGACGAGACCGGTGGTGAAACCATGGGTGGTGCATGTGGGTACGGAAACCTTTTTAACAGCGGCTACGGACTGTCCACGGCGGCGCTAAGCACGACATTGTTCAATGATGGTTACGGATGCGGCCAATGTTTTCAGATAACATGTTCGAAATCACCGCATTGTTACTCTGGAAAATCAACAGTGGTCACAGCCACCAATCTTTGCCCTCCTAATTGGTACCAAGACTCCAACGCTGGTGGTTGGTGCAATCCTCCTAGAACCCATTTCGATATGGCTAAACCAGCTTTCATGAAACTCGCTTACTGGAGGGCCGGTATCATCCCAGTTGCATACCGAAGAGTGCCATGCCAAAGGAGTGGAGGTATGAGGTTTCAATTCCAAGGTAATTCTTATTGGCTTCTTATCTTCGTCATGAACGTTGGTGGCGCCGGAGACATCAAGAGCATGGCCGTTAAAGGTAGCCGGACGAATTGGATAAGCATGAGCCACAATTGGGGAGCCTCTTACCAAGCTTTTTCCTCTCTCTATGGTCAATCTCTCTCTTTCCGGGTCACTTCTTACACCACCGGTGAAACCATCTATGCTTGGAACGTTGCTCCGGCTAACTGGAGCGGCGGTAAGACTTACAAGAGCACCGCTAATTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

262

Amino Acids

28.79

Weight (kDa)

9.33

Isoelectric Point (pI)

24.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	42 - 163	2.2e-09	EXPB1-like domain 1
DPBB_1	PF03330	72 - 157	6.2e-23	Lytic transglycolase
Expansin_C	PF01357	168 - 246	6.4e-28	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12560
fragaria_vesca	FvH4_1g26140 FvH4_1g26140
malus_domestica	MD00G1122800.v1.1 MD04G1070800.v1.1
prunus_persica	Prupe.5G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199891
rosa_laevigata	RLG00000003762
rosa_multiflora	Rmu_sc0002748.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256400
rosa_rugosa	Rorug07G0056900
rosa_samantha	Rh7AG182200 Rh7BG185100 Rh7CG191700 Rh7DG185000
rosa_wichuraiana	Rw7G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	354, 563
AccBSI	CCGCTC	1 cut(s)	750
AciI	CCGC	7 cut(s)	198, 218, 258, 293, 750, 753, 774
AclI	AACGTT	2 cut(s)	555, 729
AcoI	YGGCCR	2 cut(s)	259, 585
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	564
AfaI	GTAC	2 cut(s)	179, 356
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	278
AgeI	ACCGGT	2 cut(s)	146, 704
AgsI	TTSAA	2 cut(s)	241, 512
AjnI	CCWGG	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	27, 422, 650
AluI	AGCT	3 cut(s)	27, 422, 650
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	2 cut(s)	137, 564
AoxI	GGCC	4 cut(s)	103, 259, 447, 585
ApoI	RAATTY	1 cut(s)	35
AsiGI	ACCGGT	2 cut(s)	146, 704
Asp718I	GGTACC	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	223, 566
AspS9I	GGNCC	3 cut(s)	5, 104, 447
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	4 cut(s)	149, 164, 282, 719
AsuII	TTCGAA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	354, 563
Bbv12I	GWGCWC	1 cut(s)	773
BccI	CCATC	3 cut(s)	74, 239, 722
BceAI	ACGGC	2 cut(s)	231, 572
BciT130I	CCWGG	1 cut(s)	102
BciVI	GTATCC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	137, 564
BfaI	CTAG	1 cut(s)	393
BfoI	RGCGCY	2 cut(s)	224, 567
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	4 cut(s)	199, 219, 259, 751
BlpI	GCTNAGC	1 cut(s)	224
BlsI	GCNGC	4 cut(s)	200, 220, 260, 752
Bme1390I	CCNGG	2 cut(s)	102, 686
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	3 cut(s)	5, 104, 447
BmiI	GGNNCC	4 cut(s)	6, 356, 565, 637
BmrFI	CCNGG	2 cut(s)	102, 686
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	2 cut(s)	463, 766
Bpu1102I	GCTNAGC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	107, 159, 213, 517
BsaWI	WCCGGW	2 cut(s)	146, 704
BsaXI	ACNNNNNCTCC	8 cut(s)	347, 377, 436, 466, 484, 514, 739, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse118I	RCCGGY	3 cut(s)	146, 449, 704
Bse1I	ACTGG	3 cut(s)	446, 461, 749
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	4 cut(s)	107, 159, 213, 517
BseGI	GGATG	2 cut(s)	260, 456
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseNI	ACTGG	3 cut(s)	446, 461, 749
BshFI	GGCC	4 cut(s)	105, 261, 449, 587
BshNI	GGYRCC	2 cut(s)	354, 563
BshTI	ACCGGT	2 cut(s)	146, 704
BsiHKAI	GWGCWC	1 cut(s)	773
BsiSI	CCGG	8 cut(s)	72, 147, 450, 567, 601, 685, 705, 737
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	137, 564
BsnI	GGCC	4 cut(s)	105, 261, 449, 587
Bso31I	GGTCTC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp1720I	GCTNAGC	1 cut(s)	224
Bsp19I	CCATGG	2 cut(s)	107, 159
BspACI	CCGC	7 cut(s)	198, 218, 258, 293, 750, 753, 774
BspANI	GGCC	4 cut(s)	105, 261, 449, 587
BspHI	TCATGA	2 cut(s)	426, 549
BspLI	GGNNCC	4 cut(s)	6, 356, 565, 637
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	354, 563
BspTNI	GGTCTC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	750
BsrFI	RCCGGY	3 cut(s)	146, 449, 704
BsrI	ACTGG	3 cut(s)	446, 461, 749
BssAI	RCCGGY	3 cut(s)	146, 449, 704
BssECI	CCNNGG	4 cut(s)	107, 159, 213, 517
BssNI	GRCGYC	1 cut(s)	564
BssT1I	CCWWGG	3 cut(s)	107, 159, 517
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	137, 210, 319
Bst6I	CTCTTC	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	564
BstBI	TTCGAA	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	224
BstDSI	CCRYGG	3 cut(s)	107, 159, 213
BstF5I	GGATG	2 cut(s)	260, 456
BstH2I	RGCGCY	2 cut(s)	224, 567
BstHHI	GCGC	2 cut(s)	223, 566
BstMAI	GTCTC	2 cut(s)	137, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	2 cut(s)	174, 282
BstSCI	CCNGG	2 cut(s)	100, 684
BstXI	CCANNNNNNTGG	2 cut(s)	108, 494
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	105, 261, 449, 587
BtgI	CCRYGG	3 cut(s)	107, 159, 213
BtsCI	GGATG	2 cut(s)	260, 456
BtsIMutI	CAGTG	1 cut(s)	324
CciI	TCATGA	2 cut(s)	426, 549
CfoI	GCGC	2 cut(s)	223, 566
Cfr10I	RCCGGY	3 cut(s)	146, 449, 704
Cfr13I	GGNCC	3 cut(s)	5, 104, 447
Csp6I	GTAC	2 cut(s)	178, 355
CspAI	ACCGGT	2 cut(s)	146, 704
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	9 cut(s)	108, 160, 171, 279, 427, 483, 550, 583, 619
CviQI	GTAC	2 cut(s)	178, 355
DdeI	CTNAG	1 cut(s)	224
DinI	GGCGCC	1 cut(s)	565
EaeI	YGGCCR	2 cut(s)	259, 585
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco130I	CCWWGG	3 cut(s)	107, 159, 517
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	3 cut(s)	107, 159, 517
EgeI	GGCGCC	1 cut(s)	565
EheI	GGCGCC	1 cut(s)	565
ErhI	CCWWGG	3 cut(s)	107, 159, 517
FaeI	CATG	9 cut(s)	111, 163, 174, 282, 430, 486, 553, 586, 622
FatI	CATG	9 cut(s)	107, 159, 170, 278, 426, 482, 549, 582, 618
Fnu4HI	GCNGC	4 cut(s)	199, 219, 259, 751
FokI	GGATG	2 cut(s)	267, 443
Fsp4HI	GCNGC	4 cut(s)	199, 219, 259, 751
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	2 cut(s)	222, 565
GluI	GCNGC	4 cut(s)	199, 219, 259, 751
GsuI	CTGGAG	2 cut(s)	463, 766
HaeII	RGCGCY	2 cut(s)	224, 567
HaeIII	GGCC	4 cut(s)	105, 261, 449, 587
HapII	CCGG	8 cut(s)	72, 147, 450, 567, 601, 685, 705, 737
HhaI	GCGC	2 cut(s)	223, 566
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	9 cut(s)	111, 163, 174, 282, 430, 486, 553, 586, 622
Hin6I	GCGC	2 cut(s)	221, 564
HinP1I	GCGC	2 cut(s)	221, 564
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	8 cut(s)	72, 147, 450, 567, 601, 685, 705, 737
HphI	GGTGA	4 cut(s)	149, 164, 282, 719
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	4 cut(s)	306, 427, 550, 577
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	137, 210, 319
HpyCH4IV	ACGT	2 cut(s)	555, 729
HpyCH4V	TGCA	3 cut(s)	170, 384, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	2 cut(s)	555, 729
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	9 cut(s)	111, 163, 174, 282, 430, 486, 553, 586, 622
HspAI	GCGC	2 cut(s)	221, 564
KasI	GGCGCC	1 cut(s)	563
KpnI	GGTACC	1 cut(s)	358
LmnI	GCTCC	4 cut(s)	24, 635, 739, 747
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	555, 729
MaeIII	GTNAC	5 cut(s)	137, 248, 299, 322, 688
MbiI	CCGCTC	1 cut(s)	750
MboII	GAAGA	3 cut(s)	31, 486, 535
MfeI	CAATTG	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	773
MluCI	AATT	7 cut(s)	35, 349, 512, 523, 607, 628, 778
Mly113I	GGCGCC	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	354, 399, 438, 491, 498, 649, 667
MseI	TTAA	4 cut(s)	30, 192, 591, 787
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	8 cut(s)	72, 147, 450, 567, 601, 685, 705, 737
MspR9I	CCNGG	2 cut(s)	102, 686
MunI	CAATTG	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	419
NarI	GGCGCC	1 cut(s)	564
NciI	CCSGG	1 cut(s)	686
NcoI	CCATGG	2 cut(s)	107, 159
NlaIII	CATG	9 cut(s)	111, 163, 174, 282, 430, 486, 553, 586, 622
NlaIV	GGNNCC	4 cut(s)	6, 356, 565, 637
NmuCI	GTSAC	3 cut(s)	137, 322, 688
NspI	RCATGY	2 cut(s)	174, 282
NspV	TTCGAA	1 cut(s)	284
PagI	TCATGA	2 cut(s)	426, 549
PciI	ACATGT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PinAI	ACCGGT	2 cut(s)	146, 704
PkrI	GCNGC	4 cut(s)	200, 220, 260, 752
PleI	GAGTC	1 cut(s)	356
PluTI	GGCGCC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	356
PscI	ACATGT	1 cut(s)	278
Psp1406I	AACGTT	2 cut(s)	555, 729
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	4 cut(s)	6, 356, 565, 637
PspPI	GGNCC	3 cut(s)	5, 104, 447
RsaI	GTAC	2 cut(s)	179, 356
RsaNI	GTAC	2 cut(s)	178, 355
SaqAI	TTAA	4 cut(s)	30, 192, 591, 787
SatI	GCNGC	4 cut(s)	199, 219, 259, 751
Sau96I	GGNCC	3 cut(s)	5, 104, 447
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	102, 686
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	1 cut(s)	245
SfoI	GGCGCC	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	284
SgrAI	CRCCGGYG	1 cut(s)	704
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	7 cut(s)	35, 349, 512, 523, 607, 628, 778
SsiI	CCGC	7 cut(s)	198, 218, 258, 293, 750, 753, 774
SspDI	GGCGCC	1 cut(s)	563
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	100, 684
StyI	CCWWGG	3 cut(s)	107, 159, 517
TaaI	ACNGT	3 cut(s)	137, 210, 319
TaiI	ACGT	2 cut(s)	558, 732
TaqI	TCGA	3 cut(s)	97, 284, 405
TasI	AATT	7 cut(s)	35, 349, 512, 523, 607, 628, 778
TauI	GCSGC	4 cut(s)	201, 221, 261, 753
Tru1I	TTAA	4 cut(s)	30, 192, 591, 787
Tru9I	TTAA	4 cut(s)	30, 192, 591, 787
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	3 cut(s)	137, 322, 688
Tsp45I	GTSAC	3 cut(s)	137, 322, 688
TspDTI	ATGAA	3 cut(s)	415, 443, 566
TspGWI	ACGGA	4 cut(s)	195, 219, 267, 773
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	2 cut(s)	174, 282
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.