Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0015215

Physical Location & Seq

Genomic Coordinates Reverse (-)

26296052 .. 26296954

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1122800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTATTTCTCCATTGACCGTGTTGGAGGAGCTTGCGGTTATGGATATGCTTGCGGAACGTGTTACCAGATAAAATGTTACGGGGCAAGTGCATGCTTTAGAAATGTTAAATTCACCACTGTCACCGCCACCAACCTTTGTCCGCCAAACTGGTCCAAGGACTCCAATGCCGGCAACCCTCCTCGCACACACTTTGACATGGCCAAACCTGCCTTCATGAAAATTGCTCAGTGGAAGGCCGGCATTGTTCCCATCATGTACCGCAGAGTTCCATGCATGAGGTCGGGCGGGCTTCGATTCTCTTTCCAAGGAAACGGATACTGGTTGCTGGTATATGTGATGAATGCAGCAGGAGGAGGTGACATTGCAAGCATGTGGGTGAAGGGAACCAGATCAGGGTGGATAAAAATGAGCCATAACTGGGGAGCCTCGTACCAGGCATTTGCAACCTTGAAAGGTCAAGCTCTCTCTTTCAGGCTAACTTCCTACACAAGCAAAGAGACTATATTTGCATGGAATGTTGCTACTTCAAACTGGAATGTGGGTTTGACTTACAAATCAAATTCGAACTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

193

Amino Acids

21.31

Weight (kDa)

9.76

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	15 - 87	9.6e-17	Lytic transglycolase
Expansin_C	PF01357	99 - 175	1.3e-23	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12560
fragaria_vesca	FvH4_1g26140 FvH4_1g26140
malus_domestica	MD00G1122800.v1.1 MD04G1070800.v1.1
prunus_persica	Prupe.5G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199891
rosa_laevigata	RLG00000003762
rosa_multiflora	Rmu_sc0002748.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256400
rosa_rugosa	Rorug07G0056900
rosa_samantha	Rh7AG182200 Rh7BG185100 Rh7CG191700 Rh7DG185000
rosa_wichuraiana	Rw7G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AciI	CCGC	6 cut(s)	36, 54, 126, 143, 262, 288
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	110, 562
AfaI	GTAC	2 cut(s)	260, 434
AfiI	CCNNNNNNNGG	2 cut(s)	396, 421
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	454, 531
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	32, 464
AluI	AGCT	2 cut(s)	32, 464
Alw26I	GTCTC	1 cut(s)	494
AoxI	GGCC	2 cut(s)	201, 237
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	110, 562
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	106, 115, 371, 391
AsuII	TTCGAA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	437
BciVI	GTATCC	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	388, 427
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	156, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 421
Bse118I	RCCGGY	2 cut(s)	170, 239
Bse1I	ACTGG	4 cut(s)	155, 326, 425, 539
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	2 cut(s)	156, 307
BseLI	CCNNNNNNNGG	2 cut(s)	396, 421
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	4 cut(s)	155, 326, 425, 539
BseRI	GAGGAG	3 cut(s)	42, 171, 369
BseXI	GCAGC	1 cut(s)	359
BshFI	GGCC	2 cut(s)	203, 239
BsiSI	CCGG	2 cut(s)	171, 240
BslI	CCNNNNNNNGG	2 cut(s)	396, 421
BsmAI	GTCTC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	203, 239
Bsp119I	TTCGAA	1 cut(s)	566
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	6 cut(s)	36, 54, 126, 143, 262, 288
BspANI	GGCC	2 cut(s)	203, 239
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	388, 427
BspMI	ACCTGC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	2 cut(s)	170, 239
BsrI	ACTGG	4 cut(s)	155, 326, 425, 539
BssAI	RCCGGY	2 cut(s)	170, 239
BssECI	CCNNGG	2 cut(s)	156, 307
BssMI	GATC	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	156, 307
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	2 cut(s)	20, 121
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	7 cut(s)	34, 52, 94, 172, 241, 290, 370
BstDEI	CTNAG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	2 cut(s)	96, 376
BstSCI	CCNGG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	203, 239
BtsIMutI	CAGTG	2 cut(s)	117, 236
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	7 cut(s)	34, 52, 94, 172, 241, 290, 370
CciI	TCATGA	1 cut(s)	216
Cfr10I	RCCGGY	2 cut(s)	170, 239
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	259, 433
CviAII	CATG	8 cut(s)	93, 199, 217, 256, 273, 277, 373, 513
CviJI	RGCY	8 cut(s)	32, 203, 239, 292, 414, 428, 464, 478
CviKI_1	RGCY	8 cut(s)	32, 203, 239, 292, 414, 428, 464, 478
CviQI	GTAC	2 cut(s)	259, 433
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	156, 307
Eco47I	GGWCC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	435
EcoT14I	CCWWGG	2 cut(s)	156, 307
EcoT22I	ATGCAT	1 cut(s)	278
ErhI	CCWWGG	2 cut(s)	156, 307
FaeI	CATG	8 cut(s)	96, 202, 220, 259, 276, 280, 376, 516
FatI	CATG	8 cut(s)	92, 198, 216, 255, 272, 276, 372, 512
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	203, 239
HapII	CCGG	2 cut(s)	171, 240
Hin1II	CATG	8 cut(s)	96, 202, 220, 259, 276, 280, 376, 516
HinfI	GANTC	2 cut(s)	161, 297
HpaII	CCGG	2 cut(s)	171, 240
HphI	GGTGA	4 cut(s)	106, 115, 371, 391
Hpy188III	TCNNGA	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	223, 229, 376
HpyCH4III	ACNGT	2 cut(s)	20, 121
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	6 cut(s)	92, 276, 347, 368, 446, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	8 cut(s)	96, 202, 220, 259, 276, 280, 376, 516
KroI	GCCGGC	2 cut(s)	170, 239
KroNI	GCCGGC	2 cut(s)	172, 241
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	2 cut(s)	29, 425
Lsp1109I	GCAGC	1 cut(s)	359
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	4 cut(s)	62, 77, 121, 359
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	3 cut(s)	110, 222, 562
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	7 cut(s)	20, 189, 192, 273, 347, 350, 439
Mox20I	TGGCCA	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	278
MroNI	GCCGGC	2 cut(s)	170, 239
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	2 cut(s)	171, 240
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	209
NaeI	GCCGGC	2 cut(s)	172, 241
NdeII	GATC	1 cut(s)	392
NgoMIV	GCCGGC	2 cut(s)	170, 239
NlaIII	CATG	8 cut(s)	96, 202, 220, 259, 276, 280, 376, 516
NlaIV	GGNNCC	2 cut(s)	388, 427
NmuCI	GTSAC	2 cut(s)	121, 359
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	2 cut(s)	96, 376
NspV	TTCGAA	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	96
PagI	TCATGA	1 cut(s)	216
PctI	GAATGC	1 cut(s)	349
PdiI	GCCGGC	2 cut(s)	172, 241
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	388, 427
PspPI	GGNCC	1 cut(s)	153
RsaI	GTAC	2 cut(s)	260, 434
RsaNI	GTAC	2 cut(s)	259, 433
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	9 cut(s)	34, 62, 138, 211, 284, 361, 452, 460, 466
SfuI	TTCGAA	1 cut(s)	566
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	96
Sse9I	AATT	3 cut(s)	110, 222, 562
SsiI	CCGC	6 cut(s)	36, 54, 126, 143, 262, 288
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	2 cut(s)	156, 307
TaaI	ACNGT	2 cut(s)	20, 121
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	295, 566
TasI	AATT	3 cut(s)	110, 222, 562
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	124, 236
TseFI	GTSAC	2 cut(s)	121, 359
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	121, 359
TspDTI	ATGAA	3 cut(s)	205, 233, 356
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	124, 236
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	2 cut(s)	110, 562
XceI	RCATGY	2 cut(s)	96, 376
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.