Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015215

Physical Location & Seq

Genomic Coordinates Reverse (-)

9662436 .. 9664074

Gene Structure 1639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1070800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAATGTTTTGTAGTTGAACATTATATAAGGCATGCAAAACGGACCAACTGGCATTGCACTTGTACTTCGATCATCCTACAGAGTCTTAAAGGAACCTCTACCAACACAGACATGGCTTCTTTCCTTCCTTCGTCGAGCCTCAGCTTCCTTCTCATGTCATTGATGCTGGTAACCATTAGCACAACAGTGGTTGCAAAGGTCATTTACCGGCCGAGTCCATGGAACCTTGCCCACGCTACTTTTTACGGCGATGAGACAGCCTCCGAGACTATGGGAGGAGCTTGCGGTTATGGAAACTTGTTCAGTAATGGGTATGGTACAGATACAGCAGCATTGAGCTCAACACTATTCAACAATGGTTATGCTTGCGGAACTTGTTACCAGATAAAATGTTACGGGGCAAGTGCATGCTTTGGAAATGTTGAATTCACCACCGTCACCGCCACCAACCTTTGTCCGCCAAACTGGTCCCAGGACTCCAATGCCGGAGGCTGGTGCAACCCTCCTCGCACCCATTTCGACATGGCCAAACCTGCCTTCATGAAAATTGCTCAGTGGAAGGCCGGCATTGTTCCCGTCATGTATCGCAGAGTGCCGTGCATGAGGTCGGGCGGCCTTCGATTCTCTTTCCAAGGAAACGGGTACTGGTTGTTGGTGTATGTGATGAATGTAGGAGGAGGAGGTGACATTGCAAGCATGTGGGTGAAAGGAAGCAGATCAGGGTGGATTCAAATGAGCCATAACTGGGGAGCTTCATACCAGGCATTTGCAACCTTGAAAGGCCAAGCTCTCTCTTTCAGGCTAACTTCCTACACAAGCAAAGAGACTATAATTGCTTGGAATGTTGCTCCTTCAAGCTGGAATGTGGGTTTGACTTACAATTCAAATACCAACTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

302

Amino Acids

33.02

Weight (kDa)

9.11

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	110 - 196	2.7e-20	Lytic transglycolase
Expansin_C	PF01357	208 - 285	6.6e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12560
fragaria_vesca	FvH4_1g26140 FvH4_1g26140
malus_domestica	MD00G1122800.v1.1 MD04G1070800.v1.1
prunus_persica	Prupe.5G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199891
rosa_laevigata	RLG00000003762
rosa_multiflora	Rmu_sc0002748.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256400
rosa_rugosa	Rorug07G0056900
rosa_samantha	Rh7AG182200 Rh7BG185100 Rh7CG191700 Rh7DG185000
rosa_wichuraiana	Rw7G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AciI	CCGC	5 cut(s)	288, 372, 444, 461, 615
AcoI	YGGCCR	2 cut(s)	212, 528
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	3 cut(s)	67, 322, 647
AfiI	CCNNNNNNNGG	2 cut(s)	495, 748
AgsI	TTSAA	7 cut(s)	20, 355, 428, 734, 781, 858, 888
AjnI	CCWGG	2 cut(s)	474, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	6 cut(s)	147, 284, 342, 755, 791, 861
AluI	AGCT	6 cut(s)	147, 284, 342, 755, 791, 861
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	3 cut(s)	251, 263, 821
AoxI	GGCC	5 cut(s)	212, 528, 564, 616, 784
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	45, 471
AsuHPI	GGTGA	4 cut(s)	424, 433, 698, 718
AvaII	GGWCC	2 cut(s)	45, 471
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	344
BceAI	ACGGC	2 cut(s)	265, 583
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	2 cut(s)	476, 764
BcoDI	GTCTC	3 cut(s)	251, 263, 821
BfmI	CTRYAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	2 cut(s)	333, 616
BlsI	GCNGC	2 cut(s)	334, 617
Bme1390I	CCNGG	2 cut(s)	476, 764
Bme18I	GGWCC	2 cut(s)	45, 471
BmgT120I	GGNCC	2 cut(s)	45, 471
BmiI	GGNNCC	3 cut(s)	97, 227, 473
BmrFI	CCNGG	2 cut(s)	476, 764
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	757
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bpu10I	CCTNAGC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	221, 474, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 748
Bse118I	RCCGGY	2 cut(s)	210, 566
Bse1I	ACTGG	4 cut(s)	56, 473, 653, 752
Bse3DI	GCAATG	2 cut(s)	55, 690
BseBI	CCWGG	2 cut(s)	476, 764
BseDI	CCNNGG	3 cut(s)	221, 474, 634
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	495, 748
BseMI	GCAATG	2 cut(s)	55, 690
BseMII	CTCAG	2 cut(s)	157, 569
BseNI	ACTGG	4 cut(s)	56, 473, 653, 752
BseRI	GAGGAG	4 cut(s)	294, 498, 693, 696
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	5 cut(s)	214, 530, 566, 618, 786
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	211, 489, 567
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	495, 748
BsmAI	GTCTC	3 cut(s)	251, 263, 821
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	5 cut(s)	214, 530, 566, 618, 786
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	72, 719
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	5 cut(s)	288, 372, 444, 461, 615
BspANI	GGCC	5 cut(s)	214, 530, 566, 618, 786
BspCNI	CTCAG	2 cut(s)	156, 568
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	97, 227, 473
BspMI	ACCTGC	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	55, 690
BsrFI	RCCGGY	2 cut(s)	210, 566
BsrI	ACTGG	4 cut(s)	56, 473, 653, 752
BssAI	RCCGGY	2 cut(s)	210, 566
BssECI	CCNNGG	3 cut(s)	221, 474, 634
BssMI	GATC	2 cut(s)	72, 719
BssT1I	CCWWGG	2 cut(s)	221, 634
Bst2UI	CCWGG	2 cut(s)	476, 764
Bst4CI	ACNGT	2 cut(s)	190, 439
BstC8I	GCNNGC	6 cut(s)	36, 286, 370, 412, 568, 697
BstDEI	CTNAG	2 cut(s)	143, 555
BstDSI	CCRYGG	1 cut(s)	221
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	75, 722
BstMAI	GTCTC	3 cut(s)	251, 263, 821
BstMBI	GATC	2 cut(s)	72, 719
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	2 cut(s)	476, 764
BstNSI	RCATGY	3 cut(s)	38, 414, 703
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	474, 762
BstSFI	CTRYAG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	344
BstZI	CGGCCG	1 cut(s)	212
BsuRI	GGCC	5 cut(s)	214, 530, 566, 618, 786
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	195, 563
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	6 cut(s)	36, 286, 370, 412, 568, 697
CciI	TCATGA	1 cut(s)	543
Cfr10I	RCCGGY	2 cut(s)	210, 566
Cfr13I	GGNCC	2 cut(s)	45, 471
Csp6I	GTAC	3 cut(s)	66, 321, 646
CviQI	GTAC	3 cut(s)	66, 321, 646
DdeI	CTNAG	2 cut(s)	143, 555
DpnI	GATC	2 cut(s)	74, 721
DpnII	GATC	2 cut(s)	72, 719
EaeI	YGGCCR	2 cut(s)	212, 528
EagI	CGGCCG	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	342
EclXI	CGGCCG	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	221, 634
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	45, 471
Eco52I	CGGCCG	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	474, 762
EcoT14I	CCWWGG	2 cut(s)	221, 634
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	2 cut(s)	221, 634
FaqI	GGGAC	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	333, 616
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	333, 616
GluI	GCNGC	2 cut(s)	333, 616
HaeIII	GGCC	5 cut(s)	214, 530, 566, 618, 786
HapII	CCGG	3 cut(s)	211, 489, 567
HinfI	GANTC	5 cut(s)	85, 217, 479, 624, 730
HpaII	CCGG	3 cut(s)	211, 489, 567
HphI	GGTGA	4 cut(s)	424, 433, 698, 718
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	544
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	7 cut(s)	137, 141, 161, 550, 556, 629, 864
HpyCH4III	ACNGT	2 cut(s)	190, 439
HpyCH4V	TGCA	8 cut(s)	38, 60, 197, 410, 501, 603, 695, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	2 cut(s)	143, 555
KroI	GCCGGC	1 cut(s)	566
KroNI	GCCGGC	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	72, 719
LmnI	GCTCC	3 cut(s)	281, 752, 856
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	156
MaeIII	GTNAC	5 cut(s)	172, 380, 395, 439, 686
MalI	GATC	2 cut(s)	74, 721
MboI	GATC	2 cut(s)	72, 719
MhlI	GDGCHC	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	4 cut(s)	428, 549, 834, 883
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	3 cut(s)	94, 226, 473
Mox20I	TGGCCA	1 cut(s)	530
MroNI	GCCGGC	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	3 cut(s)	113, 188, 704
Msp20I	TGGCCA	1 cut(s)	530
MspI	CCGG	3 cut(s)	211, 489, 567
MspR9I	CCNGG	2 cut(s)	476, 764
MvaI	CCWGG	2 cut(s)	476, 764
MwoI	GCNNNNNNNGC	1 cut(s)	536
NaeI	GCCGGC	1 cut(s)	568
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	2 cut(s)	72, 719
NgoMIV	GCCGGC	1 cut(s)	566
NlaIV	GGNNCC	3 cut(s)	97, 227, 473
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	439, 686
NspI	RCATGY	3 cut(s)	38, 414, 703
OliI	CACNNNNGTG	1 cut(s)	188
PaeI	GCATGC	2 cut(s)	38, 414
PagI	TCATGA	1 cut(s)	543
PdiI	GCCGGC	1 cut(s)	568
PfeI	GAWTC	2 cut(s)	624, 730
PkrI	GCNGC	2 cut(s)	334, 617
PleI	GAGTC	3 cut(s)	93, 225, 473
PpsI	GAGTC	3 cut(s)	93, 225, 473
Psp124BI	GAGCTC	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	474, 762
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	474, 762
PspN4I	GGNNCC	3 cut(s)	97, 227, 473
PspPI	GGNCC	2 cut(s)	45, 471
RsaI	GTAC	3 cut(s)	67, 322, 647
RsaNI	GTAC	3 cut(s)	66, 321, 646
RseI	CAYNNNNRTG	3 cut(s)	113, 188, 704
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	333, 616
Sau3AI	GATC	2 cut(s)	72, 719
Sau96I	GGNCC	2 cut(s)	45, 471
SchI	GAGTC	3 cut(s)	94, 226, 473
ScrFI	CCNGG	2 cut(s)	476, 764
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	45, 471
SmiMI	CAYNNNNRTG	3 cut(s)	113, 188, 704
SphI	GCATGC	2 cut(s)	38, 414
Sse9I	AATT	4 cut(s)	428, 549, 834, 883
SsiI	CCGC	5 cut(s)	288, 372, 444, 461, 615
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	474, 762
StyI	CCWWGG	2 cut(s)	221, 634
TaaI	ACNGT	2 cut(s)	190, 439
TaqI	TCGA	4 cut(s)	71, 137, 522, 622
TasI	AATT	4 cut(s)	428, 549, 834, 883
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	624, 730
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	2 cut(s)	195, 563
TseFI	GTSAC	2 cut(s)	439, 686
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	439, 686
TspDTI	ATGAA	5 cut(s)	17, 532, 560, 683, 747
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	195, 563
VpaK11BI	GGWCC	2 cut(s)	45, 471
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	3 cut(s)	38, 414, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.