Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015215

Physical Location & Seq

Genomic Coordinates Reverse (-)

18001437 .. 18002857

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26140.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTCTTTCCTTCATTCATGGAGCTTCAGCCTTCTATTAGTGTCATTGACGTTGACAATTATAAGCAGAACAACTTTGGCGACTTACAAACCCACCCCATGGCAGCTCGCTCATGCTACTTTTTATGGGGACGAAACTGCCTCCGAGACCATGGGAGGAGCTTGTGGATATGGAAACCTGTTCCTCAATGGCTATGGAACAGATACTGTAGCATTGAGCTCAACACTGTTCAACAATGGATACTCTTGTGGAGCTTGTTTCCAGATCAAATGTTATCAGTCTCCCTGGTGCTTTAAAAATGTGCAATTCACTACCGTCACCGCGACCAATCTTTGCCCGCCAAACTGGTCCCAGGACTCCAATGCCGGAGGCTGGTGCAATCCTCCTAGGGCTCACTTCGACATGTCCAAGCCTGCCTTCATGAAGATTGCTCAGTGGAAGGCTGGCATTGTTCCAGTCATGTACCGTAGGGTACCGTGCATGAGGTCTGGGGGGCTCAGATTCTCTTTCCAAGGAAATGGGTACTGGCTCTTGGTCTATGTGATGAATGTGGGAGGAGCTGGTGACATCCAAGACATGTATGTGAAGGGAACCAGAAGTGGGTGGATTAAGATGAGCCACAACTGGGGAGCTTCATACCAGGCTTTTGCAACCTTGAAGGGCCAAGCTCTCTCTTTCAGGGTCACTTCCTACACAACCAAGCAGACCATCATTGCATGGAATGTTGCTCCTTCTAACTGGAATGTGGGCTTGACTTACAAGTCAAATACCAACTTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

262

Amino Acids

28.96

Weight (kDa)

9.36

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	43 - 129	1.1e-21	Lytic transglycolase
Expansin_C	PF01357	141 - 218	6e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12560
fragaria_vesca	FvH4_1g26140 FvH4_1g26140
malus_domestica	MD00G1122800.v1.1 MD04G1070800.v1.1
prunus_persica	Prupe.5G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199891
rosa_laevigata	RLG00000003762
rosa_multiflora	Rmu_sc0002748.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256400
rosa_rugosa	Rorug07G0056900
rosa_samantha	Rh7AG182200 Rh7BG185100 Rh7CG191700 Rh7DG185000
rosa_wichuraiana	Rw7G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AasI	GACNNNNNNGTC	1 cut(s)	763
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccII	CGCG	1 cut(s)	326
AciI	CCGC	2 cut(s)	324, 341
AcuI	CTGAAG	1 cut(s)	13
AfaI	GTAC	3 cut(s)	467, 477, 527
AfiI	CCNNNNNNNGG	4 cut(s)	102, 375, 603, 628
AflIII	ACRYGT	2 cut(s)	405, 579
AgsI	TTSAA	2 cut(s)	235, 661
AjnI	CCWGG	3 cut(s)	287, 354, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	8 cut(s)	27, 109, 164, 222, 257, 563, 635, 671
AluI	AGCT	8 cut(s)	27, 109, 164, 222, 257, 563, 635, 671
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	143, 288
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	1 cut(s)	106
Asp718I	GGTACC	1 cut(s)	475
AspA2I	CCTAGG	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	351, 664
AsuHPI	GGTGA	2 cut(s)	313, 578
AvaII	GGWCC	1 cut(s)	351
AvrII	CCTAGG	1 cut(s)	389
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	3 cut(s)	224, 397, 501
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	719
BciT130I	CCWGG	3 cut(s)	289, 356, 644
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	143, 288
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	107
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	3 cut(s)	289, 356, 644
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	351, 664
BmiI	GGNNCC	3 cut(s)	353, 477, 595
BmrFI	CCNGG	3 cut(s)	289, 356, 644
BmrI	ACTGGG	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	6 cut(s)	101, 153, 287, 354, 389, 514
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 375, 603, 628
Bse1I	ACTGG	5 cut(s)	353, 458, 533, 632, 746
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	289, 356, 644
BseDI	CCNNGG	6 cut(s)	101, 153, 287, 354, 389, 514
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	4 cut(s)	102, 375, 603, 628
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	449, 514
BseNI	ACTGG	5 cut(s)	353, 458, 533, 632, 746
BseRI	GAGGAG	2 cut(s)	174, 573
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	666
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	146, 337
BslI	CCNNNNNNNGG	4 cut(s)	102, 375, 603, 628
BsmAI	GTCTC	2 cut(s)	143, 288
BsmFI	GGGAC	2 cut(s)	146, 337
BsnI	GGCC	1 cut(s)	666
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	224, 397, 501
Bsp143I	GATC	1 cut(s)	267
Bsp19I	CCATGG	2 cut(s)	101, 153
BspACI	CCGC	2 cut(s)	324, 341
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	2 cut(s)	448, 513
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	3 cut(s)	353, 477, 595
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	5 cut(s)	353, 458, 533, 632, 746
BssECI	CCNNGG	6 cut(s)	101, 153, 287, 354, 389, 514
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	4 cut(s)	101, 153, 389, 514
Bst2UI	CCWGG	3 cut(s)	289, 356, 644
Bst4CI	ACNGT	5 cut(s)	211, 231, 319, 470, 480
BstC8I	GCNNGC	4 cut(s)	111, 341, 417, 448
BstDEI	CTNAG	2 cut(s)	435, 500
BstDSI	CCRYGG	2 cut(s)	101, 153
BstF5I	GGATG	1 cut(s)	570
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	2 cut(s)	143, 288
BstMBI	GATC	1 cut(s)	267
BstNI	CCWGG	3 cut(s)	289, 356, 644
BstNSI	RCATGY	2 cut(s)	409, 583
BstSCI	CCNGG	3 cut(s)	287, 354, 642
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	521
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	666
BtgI	CCRYGG	2 cut(s)	101, 153
BtsCI	GGATG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	227, 443, 781
Cac8I	GCNNGC	4 cut(s)	111, 341, 417, 448
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	351, 664
Csp6I	GTAC	3 cut(s)	466, 476, 526
CviQI	GTAC	3 cut(s)	466, 476, 526
DdeI	CTNAG	2 cut(s)	435, 500
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DraI	TTTAAA	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	763
DseDI	GACNNNNNNGTC	1 cut(s)	763
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	4 cut(s)	101, 153, 389, 514
Eco24I	GRGCYC	3 cut(s)	224, 397, 501
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	3 cut(s)	287, 354, 642
EcoT14I	CCWWGG	4 cut(s)	101, 153, 389, 514
EcoT38I	GRGCYC	3 cut(s)	224, 397, 501
ErhI	CCWWGG	4 cut(s)	101, 153, 389, 514
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	2 cut(s)	146, 337
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	3 cut(s)	224, 397, 501
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	666
HapII	CCGG	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	359, 504
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	2 cut(s)	313, 578
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	148, 503
Hpy188III	TCNNGA	2 cut(s)	265, 424
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	7 cut(s)	23, 44, 430, 436, 583, 655, 744
HpyCH4III	ACNGT	5 cut(s)	211, 231, 319, 470, 480
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	5 cut(s)	307, 381, 483, 653, 719
HpyF3I	CTNAG	2 cut(s)	435, 500
HpySE526I	ACGT	1 cut(s)	53
KpnI	GGTACC	1 cut(s)	479
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	6 cut(s)	24, 161, 254, 560, 632, 736
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	319, 566, 685
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	1 cut(s)	439
MhlI	GDGCHC	3 cut(s)	224, 397, 501
MluCI	AATT	2 cut(s)	60, 308
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	7 cut(s)	152, 154, 197, 365, 396, 480, 551
MseI	TTAA	2 cut(s)	297, 612
MslI	CAYNNNNRTG	1 cut(s)	584
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	3 cut(s)	289, 356, 644
MvaI	CCWGG	3 cut(s)	289, 356, 644
MvnI	CGCG	1 cut(s)	326
NcoI	CCATGG	2 cut(s)	101, 153
NdeII	GATC	1 cut(s)	267
NlaIV	GGNNCC	3 cut(s)	353, 477, 595
NmuCI	GTSAC	3 cut(s)	319, 566, 685
NspI	RCATGY	2 cut(s)	409, 583
PagI	TCATGA	1 cut(s)	423
PciI	ACATGT	2 cut(s)	405, 579
PfeI	GAWTC	1 cut(s)	504
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PscI	ACATGT	2 cut(s)	405, 579
PsiI	TTATAA	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	3 cut(s)	287, 354, 642
PspGI	CCWGG	3 cut(s)	287, 354, 642
PspN4I	GGNNCC	3 cut(s)	353, 477, 595
PspPI	GGNCC	2 cut(s)	351, 664
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	3 cut(s)	467, 477, 527
RsaNI	GTAC	3 cut(s)	466, 476, 526
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	297, 612
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	351, 664
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	3 cut(s)	289, 356, 644
SduI	GDGCHC	3 cut(s)	224, 397, 501
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	60, 308
SsiI	CCGC	2 cut(s)	324, 341
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	287, 354, 642
StyI	CCWWGG	4 cut(s)	101, 153, 389, 514
TaaI	ACNGT	5 cut(s)	211, 231, 319, 470, 480
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	60, 308
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	2 cut(s)	297, 612
Tru9I	TTAA	2 cut(s)	297, 612
TscAI	CASTG	2 cut(s)	234, 443
TseFI	GTSAC	3 cut(s)	319, 566, 685
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	3 cut(s)	319, 566, 685
TspDTI	ATGAA	6 cut(s)	5, 9, 412, 440, 563, 627
TspRI	CASTG	2 cut(s)	234, 443
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	351
XceI	RCATGY	2 cut(s)	409, 583
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.