Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015215

Physical Location & Seq

Genomic Coordinates Reverse (-)

4093438 .. 4094336

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0056900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGACTATTGTACCTGCATTCATTTATATGCATCATATCTCGAAGAACGCCTGGACTGTTTTCGTGTCCTGAAGTACGATGTTCAGAAAGATCACTTGAGAACCAAGGAACTTGAAACCCCAGACTTACTAAGGCATCTACCTGCTTTGCAACAGCTTCTTTCTCACCTTCTTGATTGCCAGGTGGCTGATCCAATGTTCATTCCTTTGTTTTTGTTTTGTTCACTTTATTTTATTTTTATTCTTCCTTTATTTTCAGTCTATCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

90

Amino Acids

10.76

Weight (kDa)

5.35

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANTH	PF07651	2 - 63	3e-10	ANTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12560
fragaria_vesca	FvH4_1g26140 FvH4_1g26140
malus_domestica	MD00G1122800.v1.1 MD04G1070800.v1.1
prunus_persica	Prupe.5G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199891
rosa_laevigata	RLG00000003762
rosa_multiflora	Rmu_sc0002748.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256400
rosa_rugosa	Rorug07G0056900
rosa_samantha	Rh7AG182200 Rh7BG185100 Rh7CG191700 Rh7DG185000
rosa_wichuraiana	Rw7G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	23, 151
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	13, 77
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	51, 180
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
AlwI	GGATC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	158
BaeI	ACNNNNGTAYC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	53, 182
BfuAI	ACCTGC	2 cut(s)	23, 151
Bme1390I	CCNGG	2 cut(s)	53, 182
BmrFI	CCNGG	2 cut(s)	53, 182
BmsI	GCATC	2 cut(s)	41, 145
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	53, 182
BseDI	CCNNGG	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	91, 190
BspMI	ACCTGC	2 cut(s)	23, 151
BspPI	GGATC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	91, 190
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	53, 182
Bst4CI	ACNGT	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	94, 193
BstMBI	GATC	2 cut(s)	91, 190
BstNI	CCWGG	2 cut(s)	53, 182
BstSCI	CCNGG	2 cut(s)	51, 180
BveI	ACCTGC	2 cut(s)	23, 151
Csp6I	GTAC	2 cut(s)	12, 76
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	2 cut(s)	157, 188
CviKI_1	RGCY	2 cut(s)	157, 188
CviQI	GTAC	2 cut(s)	12, 76
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	93, 192
DpnII	GATC	2 cut(s)	91, 190
Eco130I	CCWWGG	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	51, 180
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	273
FaiI	YATR	4 cut(s)	28, 30, 37, 271
FatI	CATG	1 cut(s)	269
Hin1II	CATG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	41, 70, 173
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	18, 32, 151
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	91, 190
LpnPI	CCDG	8 cut(s)	28, 38, 65, 83, 135, 156, 167, 194
LweI	GCATC	2 cut(s)	41, 145
MalI	GATC	2 cut(s)	93, 192
MboI	GATC	2 cut(s)	91, 190
MboII	GAAGA	3 cut(s)	56, 236, 257
Mph1103I	ATGCAT	1 cut(s)	34
MslI	CAYNNNNRTG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	53, 182
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	53, 182
NdeII	GATC	2 cut(s)	91, 190
NlaIII	CATG	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	51, 180
PspGI	CCWGG	2 cut(s)	51, 180
RsaI	GTAC	2 cut(s)	13, 77
RsaNI	GTAC	2 cut(s)	12, 76
RseI	CAYNNNNRTG	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	91, 190
ScrFI	CCNGG	2 cut(s)	53, 182
SetI	ASST	5 cut(s)	17, 145, 159, 171, 186
SfaNI	GCATC	2 cut(s)	41, 145
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	51, 180
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	11, 190
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.