Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015215

Physical Location & Seq

Genomic Coordinates Forward (+)

9840384 .. 9841932

Gene Structure 1549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G087100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTTCTTTCCTTCCTTCATGGAGCTTTAGCTTCCTCTTCACATCGTGGATGCTGGTAACCCTAAGCAGAACAGTGGTTGCAAAGGTCGTTTACCGACCTAGTCCGTGGCACCTTGCCCATGCTACTTTCTATGGTGACGAGACTGCCTCCGAGACTATGGGTGGAGCTTGTGGGTATGGAAACTTGTTCGTTAATGGGTATGGCACAGACACAGCAGCATTGAGCTCAACACTATTCAACAACGGATATGCTTGTGGAACTTGTTACCAGATAAAATGTTATGGGACTAGTGCATGCTTTAGAAATGTTCAATTCACCACCGTGACCGCTACCAACCTTTGTCCGCCAAACTGGTCCCAAGACTCCAACGCTGGAGGCTGGTGCAACCCGCCTCGGACCCATTTTGACATGTCCAAGCCAGCCTTCATGAAAATTGCTCAGTGGAAGGCTGGCATTGTCCCAGTTATGTACCGCAGAGTGCCATGCATAAGGGCCGGGGGGCTTCGATTCTCTTTCCAAGGAAATGGGTACTGGTTGTTGGTGTATGTGATGAATGTAGCAGGAGGGGGTGACATTGCAAACATGTGGGTGAAAGGAAGCAGATCAGGGTGGATCAAAATGAGCCACAACTGGGGAGCTTCATACCAGGCCTTTGCAACCTTGGGAGGCCAAGCTCTCTCTTTCAGGATCACTTCCTACACATCCAAGGAGACTATAATAGCATGGAATGTTGCTCCTTCAACCTGGAATGTGGGTTTGACTTACAAGGCAAATGTCAACTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

264

Amino Acids

28.99

Weight (kDa)

9.39

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12560
fragaria_vesca	FvH4_1g26140 FvH4_1g26140
malus_domestica	MD00G1122800.v1.1 MD04G1070800.v1.1
prunus_persica	Prupe.5G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199891
rosa_laevigata	RLG00000003762
rosa_multiflora	Rmu_sc0002748.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256400
rosa_rugosa	Rorug07G0056900
rosa_samantha	Rh7AG182200 Rh7BG185100 Rh7CG191700 Rh7DG185000
rosa_wichuraiana	Rw7G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AciI	CCGC	4 cut(s)	330, 347, 392, 475
AclWI	GGATC	2 cut(s)	623, 698
AdeI	CACNNNGTG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	473, 533
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflIII	ACRYGT	2 cut(s)	411, 585
AgsI	TTSAA	3 cut(s)	241, 314, 744
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	648, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	6 cut(s)	27, 33, 170, 228, 641, 677
AluI	AGCT	6 cut(s)	27, 33, 170, 228, 641, 677
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	3 cut(s)	137, 149, 707
AlwI	GGATC	2 cut(s)	623, 698
AoxI	GGCC	3 cut(s)	495, 651, 670
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	357, 399, 495
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	4 cut(s)	149, 310, 584, 604
AvaII	GGWCC	2 cut(s)	357, 399
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	650, 748
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	137, 149, 707
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	2 cut(s)	102, 291
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	499, 650, 748
Bme18I	GGWCC	2 cut(s)	357, 399
BmgT120I	GGNCC	3 cut(s)	357, 399, 495
BmiI	GGNNCC	3 cut(s)	113, 359, 401
BmrFI	CCNGG	3 cut(s)	499, 650, 748
BmrI	ACTGGG	2 cut(s)	458, 643
BmsI	GCATC	1 cut(s)	42
BmuI	ACTGGG	2 cut(s)	458, 643
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	499
BsaJI	CCNNGG	6 cut(s)	107, 395, 498, 520, 663, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	4 cut(s)	359, 464, 539, 638
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	650, 748
BseDI	CCNNGG	6 cut(s)	107, 395, 498, 520, 663, 708
BseGI	GGATG	2 cut(s)	57, 704
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	4 cut(s)	359, 464, 539, 638
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	3 cut(s)	497, 653, 672
BshNI	GGYRCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	3 cut(s)	301, 343, 446
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	3 cut(s)	137, 149, 707
BsmFI	GGGAC	3 cut(s)	301, 343, 446
BsnI	GGCC	3 cut(s)	497, 653, 672
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	605, 615, 690
BspACI	CCGC	4 cut(s)	330, 347, 392, 475
BspANI	GGCC	3 cut(s)	497, 653, 672
BspCNI	CTCAG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	113, 359, 401
BspPI	GGATC	2 cut(s)	623, 698
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	4 cut(s)	359, 464, 539, 638
BssECI	CCNNGG	6 cut(s)	107, 395, 498, 520, 663, 708
BssMI	GATC	3 cut(s)	605, 615, 690
BssT1I	CCWWGG	3 cut(s)	520, 663, 708
Bst2UI	CCWGG	2 cut(s)	650, 748
Bst4CI	ACNGT	2 cut(s)	76, 325
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	298, 423, 454
BstDEI	CTNAG	2 cut(s)	65, 441
BstDSI	CCRYGG	1 cut(s)	107
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	57, 704
BstKTI	GATC	3 cut(s)	608, 618, 693
BstMAI	GTCTC	3 cut(s)	137, 149, 707
BstMBI	GATC	3 cut(s)	605, 615, 690
BstNI	CCWGG	2 cut(s)	650, 748
BstNSI	RCATGY	3 cut(s)	300, 415, 589
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	497, 648, 746
BstV1I	GCAGC	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	527
BsuRI	GGCC	3 cut(s)	497, 653, 672
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	57, 704
BtsIMutI	CAGTG	2 cut(s)	81, 449
Cac8I	GCNNGC	3 cut(s)	298, 423, 454
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	3 cut(s)	357, 399, 495
Csp6I	GTAC	2 cut(s)	472, 532
CviAII	CATG	8 cut(s)	21, 122, 297, 412, 430, 486, 586, 726
CviQI	GTAC	2 cut(s)	472, 532
DdeI	CTNAG	2 cut(s)	65, 441
DpnI	GATC	3 cut(s)	607, 617, 692
DpnII	GATC	3 cut(s)	605, 615, 690
DraIII	CACNNNGTG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	336
Ecl136II	GAGCTC	1 cut(s)	228
Eco130I	CCWWGG	3 cut(s)	520, 663, 708
Eco147I	AGGCCT	1 cut(s)	653
Eco24I	GRGCYC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	357, 399
Eco53kI	GAGCTC	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	228
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	648, 746
EcoT14I	CCWWGG	3 cut(s)	520, 663, 708
EcoT22I	ATGCAT	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	3 cut(s)	520, 663, 708
FaeI	CATG	8 cut(s)	24, 125, 300, 415, 433, 489, 589, 729
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	3 cut(s)	301, 343, 446
FatI	CATG	8 cut(s)	20, 121, 296, 411, 429, 485, 585, 725
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	64, 691
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	102, 291
GluI	GCNGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	497, 653, 672
HapII	CCGG	1 cut(s)	498
Hin1II	CATG	8 cut(s)	24, 125, 300, 415, 433, 489, 589, 729
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	2 cut(s)	365, 510
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	4 cut(s)	149, 310, 584, 604
Hpy166II	GTNNAC	2 cut(s)	94, 781
Hpy188I	TCNGA	2 cut(s)	154, 399
Hpy188III	TCNNGA	2 cut(s)	430, 688
Hpy8I	GTNNAC	2 cut(s)	94, 781
HpyAV	CCTTC	5 cut(s)	23, 27, 436, 442, 750
HpyCH4III	ACNGT	2 cut(s)	76, 325
HpyCH4V	TGCA	6 cut(s)	83, 296, 387, 489, 581, 659
HpyF3I	CTNAG	2 cut(s)	65, 441
Hsp92II	CATG	8 cut(s)	24, 125, 300, 415, 433, 489, 589, 729
Kzo9I	GATC	3 cut(s)	605, 615, 690
LmnI	GCTCC	4 cut(s)	24, 167, 638, 742
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	102, 291
MaeIII	GTNAC	5 cut(s)	58, 137, 266, 325, 572
MalI	GATC	3 cut(s)	607, 617, 692
MboI	GATC	3 cut(s)	605, 615, 690
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	2 cut(s)	314, 435
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	6 cut(s)	47, 160, 371, 405, 560, 662
Mph1103I	ATGCAT	1 cut(s)	491
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	323, 590
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	3 cut(s)	499, 650, 748
MvaI	CCWGG	2 cut(s)	650, 748
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	3 cut(s)	605, 615, 690
NlaIII	CATG	8 cut(s)	24, 125, 300, 415, 433, 489, 589, 729
NlaIV	GGNNCC	3 cut(s)	113, 359, 401
NmuCI	GTSAC	3 cut(s)	137, 325, 572
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	3 cut(s)	300, 415, 589
OliI	CACNNNNGTG	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	300
PagI	TCATGA	1 cut(s)	429
PceI	AGGCCT	1 cut(s)	653
PciI	ACATGT	2 cut(s)	411, 585
PfeI	GAWTC	1 cut(s)	510
PflFI	GACNNNGTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	2 cut(s)	411, 585
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	648, 746
PspEI	GGTNACC	1 cut(s)	58
PspGI	CCWGG	2 cut(s)	648, 746
PspN4I	GGNNCC	3 cut(s)	113, 359, 401
PspPI	GGNCC	3 cut(s)	357, 399, 495
PsyI	GACNNNGTC	1 cut(s)	102
RsaI	GTAC	2 cut(s)	473, 533
RsaNI	GTAC	2 cut(s)	472, 532
RseI	CAYNNNNRTG	2 cut(s)	323, 590
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	605, 615, 690
Sau96I	GGNCC	3 cut(s)	357, 399, 495
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	3 cut(s)	499, 650, 748
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	357, 399
SmiMI	CAYNNNNRTG	2 cut(s)	323, 590
SpeI	ACTAGT	1 cut(s)	290
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	2 cut(s)	314, 435
SseBI	AGGCCT	1 cut(s)	653
SsiI	CCGC	4 cut(s)	330, 347, 392, 475
SspMI	CTAG	2 cut(s)	102, 291
SstI	GAGCTC	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	653
StyD4I	CCNGG	3 cut(s)	497, 648, 746
StyI	CCWWGG	3 cut(s)	520, 663, 708
TaaI	ACNGT	2 cut(s)	76, 325
TaqI	TCGA	1 cut(s)	508
TasI	AATT	2 cut(s)	314, 435
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	81, 449
TseFI	GTSAC	3 cut(s)	137, 325, 572
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	3 cut(s)	137, 325, 572
TspDTI	ATGAA	5 cut(s)	9, 418, 446, 569, 633
TspGWI	ACGGA	2 cut(s)	96, 261
TspRI	CASTG	2 cut(s)	81, 449
Tth111I	GACNNNGTC	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	357, 399
XceI	RCATGY	3 cut(s)	300, 415, 589
XspI	CTAG	2 cut(s)	102, 291
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.