Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015215

Physical Location & Seq

Genomic Coordinates Forward (+)

50760139 .. 50761919

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGCATCCCAGAGTTGATCCAAAAGCTTAATATTGCTGCCCTTAATAAGTTTCTTAACTACTACCATGGCTTCTTTCCTTCGTTCATGGAGTTTCAGCCTCCTCTTATTGTCATGGATGTTGGCAATCATAAGCAGAACAACCTTGGCGGAGGAGCTTGTGGATATGGAAACCTGTTCCTCAATGGCTATGGAACAGATACTGTAGCGTTGAGTTCAACACTGTTCAACAATGGATACTCTTGTGGAGCTTGCTTCCAGATCAAATGTTATCAGTCTCCCTGGTGCTTTAAAAATGTTCAGTTCACCACTGTTACCGCCACCAATCTTTGCCCGCCAAACTGGTCCCAGGACTCCAATGCCGGAGGCTGGTGCAACCCTCCTAGGGCTCACTTCGACATGGCCAAGCCTGCCTTCATGAAGATTGCTCAGTGGAAGGCTGGCATTGTTCCAATCATGTACCGCAGGGTACCATGCATAAGGGCTGGGGGTCTCAGATTCTCTTTCCAAGGAAATGGGTACTGGCTCTTGGTCTATGTGATGAATGTGGGAGGAGCTGGTGACATCCAAAACATGTGGGTGAAGGGAACCAGATCTGGGTGGATTAAGATGAGCCATAACTGGGGAGCTTCATACCAGGCTTTTGCAACCTTGAAGGGCCAAGCTCTCTCTTTCAGGGTCACTTCCTACACAACCAGGCAGACAATCATTGCATGGAATGTTGCTCCGTCTAACTGGAATGTGGGTTTGACTTACAAGTCAAATACCAACTTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

259

Amino Acids

28.92

Weight (kDa)

9.51

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	68 - 154	2.4e-20	Lytic transglycolase
Expansin_C	PF01357	166 - 243	2.3e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12560
fragaria_vesca	FvH4_1g26140 FvH4_1g26140
malus_domestica	MD00G1122800.v1.1 MD04G1070800.v1.1
prunus_persica	Prupe.5G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199891
rosa_laevigata	RLG00000003762
rosa_multiflora	Rmu_sc0002748.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256400
rosa_rugosa	Rorug07G0056900
rosa_samantha	Rh7AG182200 Rh7BG185100 Rh7CG191700 Rh7DG185000
rosa_wichuraiana	Rw7G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	757
Acc65I	GGTACC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	469
AciI	CCGC	4 cut(s)	150, 318, 335, 463
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	402
AfaI	GTAC	3 cut(s)	461, 471, 521
AfiI	CCNNNNNNNGG	4 cut(s)	369, 385, 597, 622
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	219, 229, 655
AjnI	CCWGG	4 cut(s)	281, 348, 636, 695
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	6 cut(s)	28, 158, 251, 557, 629, 665
AluI	AGCT	6 cut(s)	28, 158, 251, 557, 629, 665
Alw26I	GTCTC	2 cut(s)	282, 497
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	402, 658
ApeKI	GCWGC	1 cut(s)	38
Asp718I	GGTACC	1 cut(s)	469
AspA2I	CCTAGG	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	345, 658
AsuHPI	GGTGA	3 cut(s)	298, 572, 592
AvaII	GGWCC	1 cut(s)	345
AvrII	CCTAGG	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	25
BciT130I	CCWGG	4 cut(s)	283, 350, 638, 697
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	282, 497
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	1 cut(s)	39
BlnI	CCTAGG	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	4 cut(s)	283, 350, 638, 697
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	345, 658
BmiI	GGNNCC	3 cut(s)	347, 471, 589
BmrFI	CCNGG	4 cut(s)	283, 350, 638, 697
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	631
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	6 cut(s)	67, 145, 281, 348, 383, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	369, 385, 597, 622
Bse1I	ACTGG	4 cut(s)	347, 527, 626, 740
Bse3DI	GCAATG	1 cut(s)	708
BseBI	CCWGG	4 cut(s)	283, 350, 638, 697
BseDI	CCNNGG	6 cut(s)	67, 145, 281, 348, 383, 508
BseGI	GGATG	3 cut(s)	6, 124, 564
BseLI	CCNNNNNNNGG	4 cut(s)	369, 385, 597, 622
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	443, 508
BseNI	ACTGG	4 cut(s)	347, 527, 626, 740
BseRI	GAGGAG	3 cut(s)	93, 168, 567
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	2 cut(s)	404, 660
BshNI	GGYRCC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	4 cut(s)	369, 385, 597, 622
BsmAI	GTCTC	2 cut(s)	282, 497
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	404, 660
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	18, 261, 593
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	4 cut(s)	150, 318, 335, 463
BspANI	GGCC	2 cut(s)	404, 660
BspCNI	CTCAG	2 cut(s)	442, 507
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	347, 471, 589
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	708
BsrI	ACTGG	4 cut(s)	347, 527, 626, 740
BssECI	CCNNGG	6 cut(s)	67, 145, 281, 348, 383, 508
BssMI	GATC	3 cut(s)	18, 261, 593
BssT1I	CCWWGG	4 cut(s)	67, 145, 383, 508
Bst2UI	CCWGG	4 cut(s)	283, 350, 638, 697
Bst4CI	ACNGT	3 cut(s)	205, 225, 313
BstC8I	GCNNGC	4 cut(s)	253, 335, 411, 442
BstDEI	CTNAG	2 cut(s)	429, 494
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	6, 124, 564
BstKTI	GATC	3 cut(s)	21, 264, 596
BstMAI	GTCTC	2 cut(s)	282, 497
BstMBI	GATC	3 cut(s)	18, 261, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	4 cut(s)	283, 350, 638, 697
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	4 cut(s)	281, 348, 636, 695
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	593
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	404, 660
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	6, 124, 564
BtsIMutI	CAGTG	4 cut(s)	221, 309, 437, 775
Cac8I	GCNNGC	4 cut(s)	253, 335, 411, 442
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	345, 658
Csp6I	GTAC	3 cut(s)	460, 470, 520
CspCI	CAANNNNNGTGG	2 cut(s)	557, 592
CviAII	CATG	9 cut(s)	68, 88, 115, 400, 418, 457, 474, 574, 714
CviQI	GTAC	3 cut(s)	460, 470, 520
DdeI	CTNAG	2 cut(s)	429, 494
DpnI	GATC	3 cut(s)	20, 263, 595
DpnII	GATC	3 cut(s)	18, 261, 593
DraI	TTTAAA	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	757
DseDI	GACNNNNNNGTC	1 cut(s)	757
EaeI	YGGCCR	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	165
Eco130I	CCWWGG	4 cut(s)	67, 145, 383, 508
Eco24I	GRGCYC	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	345
EcoRII	CCWGG	4 cut(s)	281, 348, 636, 695
EcoT14I	CCWWGG	4 cut(s)	67, 145, 383, 508
EcoT22I	ATGCAT	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	4 cut(s)	67, 145, 383, 508
FaeI	CATG	9 cut(s)	71, 91, 118, 403, 421, 460, 477, 577, 717
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	9 cut(s)	67, 87, 114, 399, 417, 456, 473, 573, 713
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	2 cut(s)	131, 551
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	404, 660
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	9 cut(s)	71, 91, 118, 403, 421, 460, 477, 577, 717
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	353, 498
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	3 cut(s)	298, 572, 592
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	497
Hpy188III	TCNNGA	2 cut(s)	259, 418
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	5 cut(s)	90, 424, 430, 577, 649
HpyCH4III	ACNGT	3 cut(s)	205, 225, 313
HpyCH4V	TGCA	4 cut(s)	375, 477, 647, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	429, 494
Hsp92II	CATG	9 cut(s)	71, 91, 118, 403, 421, 460, 477, 577, 717
KpnI	GGTACC	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	18, 261, 593
LmnI	GCTCC	5 cut(s)	155, 248, 554, 626, 730
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	3 cut(s)	313, 560, 679
MalI	GATC	3 cut(s)	20, 263, 595
MboI	GATC	3 cut(s)	18, 261, 593
MboII	GAAGA	1 cut(s)	433
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	404
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	7 cut(s)	111, 114, 146, 191, 359, 390, 545
Mox20I	TGGCCA	1 cut(s)	404
Mph1103I	ATGCAT	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	5 cut(s)	30, 45, 57, 291, 606
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	4 cut(s)	283, 350, 638, 697
MvaI	CCWGG	4 cut(s)	283, 350, 638, 697
MwoI	GCNNNNNNNGC	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	18, 261, 593
NlaIII	CATG	9 cut(s)	71, 91, 118, 403, 421, 460, 477, 577, 717
NlaIV	GGNNCC	3 cut(s)	347, 471, 589
NmuCI	GTSAC	2 cut(s)	560, 679
NsiI	ATGCAT	1 cut(s)	479
NspI	RCATGY	1 cut(s)	577
PagI	TCATGA	1 cut(s)	417
PciI	ACATGT	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	498
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PscI	ACATGT	1 cut(s)	573
Psp6I	CCWGG	4 cut(s)	281, 348, 636, 695
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	4 cut(s)	281, 348, 636, 695
PspN4I	GGNNCC	3 cut(s)	347, 471, 589
PspPI	GGNCC	2 cut(s)	345, 658
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	593
RsaI	GTAC	3 cut(s)	461, 471, 521
RsaNI	GTAC	3 cut(s)	460, 470, 520
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	5 cut(s)	30, 45, 57, 291, 606
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	18, 261, 593
Sau96I	GGNCC	2 cut(s)	345, 658
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	4 cut(s)	283, 350, 638, 697
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	9 cut(s)	30, 147, 160, 177, 253, 559, 631, 653, 667
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	578
SsiI	CCGC	4 cut(s)	150, 318, 335, 463
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	281, 348, 636, 695
StyI	CCWWGG	4 cut(s)	67, 145, 383, 508
TaaI	ACNGT	3 cut(s)	205, 225, 313
TaqI	TCGA	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	5 cut(s)	30, 45, 57, 291, 606
Tru9I	TTAA	5 cut(s)	30, 45, 57, 291, 606
TscAI	CASTG	3 cut(s)	228, 316, 437
TseFI	GTSAC	2 cut(s)	560, 679
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	2 cut(s)	560, 679
TspDTI	ATGAA	5 cut(s)	76, 406, 434, 557, 621
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	3 cut(s)	228, 316, 437
VpaK11BI	GGWCC	1 cut(s)	345
XceI	RCATGY	1 cut(s)	577
XmaJI	CCTAGG	1 cut(s)	383
XspI	CTAG	1 cut(s)	384
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.