AT1G12680
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
4319877 .. 4323265
3389 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12680.1

Sequence Viewer

Length: 1413 bp
ATGAGGAAGAAGCGGAAAGGTAGTGAAACTGAGGGTTGGGAGAATTTACCAGATGATTTATCATGTTCAACTGCATCACGATCATCCAACTTCAGGTCGCACTTTTCACTAGAGGGTTATGCTAGACTTAAGAAACGGTGTAAGGAGACTGAAGCTGTCGAGTCTGTTGGTTCCTTTAAGAGACGAATTGCTGGTGTTGCTACTGCACCTCCTTGTGGTGCATCATCTTTGGTTTCGTCAGGAAGAGGTTTGAAGAGGAAGATAGGGTGCATAGATGTTTCCACACAGACTGGTAGGAAGAATAAAATAGACGATGACTATGTTTTTGGTCGAAATATTGGGAAAGGGAAATTTGGGTCAGTCAGGATCTGTAAGTCTAGGAAGAATGGGACTGAGTTTGCTTGTAAAACTCTGAAGAAGGGGGAGGAGACTGTTCACCGGGAAGTTGAGATAATGCAACATTTGTCTGGTCATCCTCGGGTTGTCACATTGCATGCTGTGTATGAAGAGTCAGACTGTTTCCATCTTGTGATGGAGCTGTGTTCAGGGGGACGTTTGATTGATCAGATGGTAAAGGTGGGCAGGTATTCTGAGCAACGAGCAGCTAATATATTCAAGGACCTTATGCTAGTGATCAATTATTGCCATGAGATGGGAGTTGTGCATAGAGATATAAAACCTGAGAATATTCTCCTAACAGCTGCTGGGAAGATACAGCTGGCTGATTTTGGCCTCGCCATGAGAATTGCAAAAGGTCAAACACTGTCAGGATTGGCAGGAAGTCCTGCTTATGTTGCACCTGAAGTTCTTTCCGAAAATTATTCAGAGAAGGTTGACGTTTGGAGTGCAGGTGTCCTCTTATACGCTCTCTTGTCTGGTGTACTCCCTTTTAAGGGAGACTCATTGGATGCTATTTTCGAAGCAATCAAAAACGTGAAGCTTGATTTCAACACGGGAGTGTGGGAGTCTGTGTCCAAACCTGCCCGTGATCTCTTGGCGAGAATGCTAACAAGGGAAGAATCTGCCAGAATCACAGCGGATGAAGTGCTAAGGCATCCATGGATACTCTTTTACACAGACCGGACACTCAAGACCATGTGTATCAAGTCGAAGCACAAGAGTCAAGCAGGATCTTCTACGTGTCTCCAGAATCGCAGTCCCACAGAGAAAACTGACCTAAACAGAGCTGACAGGGAAAAGAAGATACCATCTGATTCACCGACTGATTCATTCTCCAACACAGAGGAGGAAGAAGATGAGAGCGGTGTGGTCGATGTGCTTGTTGTTGCAATCGCCAACGTGAGGATCTCAGAACCAAAGAGAAGCAGAGTCTGTAGTCCCACCAATAACCCCATTGAGCAGCAACACTCTTCTAACTTGACCTCGACTAGTACACTCTGTCGAGCTTTCTGA

Protein Analysis

470

Amino Acids

52.06

Weight (kDa)

8.96

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 107 - 355 9.5e-72 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 109 - 349 1.1e-33 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 171 - 251 1e-05 ABC1 atypical kinase-like domain
Kinase-like PF14531 209 - 343 1e-06 Kinase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 839
Acc36I ACCTGC 3 cut(s) 573, 839, 988
AccB7I CCANNNNNTGG 1 cut(s) 652
AccBSI CCGCTC 1 cut(s) 1263
AciI CCGC 3 cut(s) 13, 1037, 1263
AclWI GGATC 3 cut(s) 374, 1138, 1313
AcsI RAATTY 2 cut(s) 43, 350
AcuI CTGAAG 4 cut(s) 76, 171, 434, 822
AfaI GTAC 2 cut(s) 882, 1393
AfiI CCNNNNNNNGG 6 cut(s) 93, 215, 652, 892, 893, 1302
AflII CTTAAG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 1139
AgsI TTSAA 4 cut(s) 69, 253, 616, 949
AhlI ACTAGT 1 cut(s) 1388
AleI CACNNNNGTG 1 cut(s) 956
AluBI AGCT 8 cut(s) 155, 538, 605, 701, 718, 940, 1187, 1406
AluI AGCT 8 cut(s) 155, 538, 605, 701, 718, 940, 1187, 1406
Alw26I GTCTC 5 cut(s) 140, 175, 422, 891, 1148
AlwI GGATC 3 cut(s) 374, 1138, 1313
AlwNI CAGNNNCTG 3 cut(s) 369, 704, 1332
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 3 cut(s) 602, 701, 1360
ApoI RAATTY 2 cut(s) 43, 350
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspS9I GGNCC 1 cut(s) 619
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 428, 1209
AsuII TTCGAA 1 cut(s) 918
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 1 cut(s) 619
BbvI GCAGC 3 cut(s) 614, 688, 1372
BccI CCATC 5 cut(s) 526, 531, 562, 646, 1216
BciVI GTATCC 1 cut(s) 1056
BclI TGATCA 2 cut(s) 562, 633
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 5 cut(s) 140, 175, 422, 891, 1148
BcuI ACTAGT 1 cut(s) 1388
BfaI CTAG 5 cut(s) 110, 123, 378, 629, 1389
BfmI CTRYAG 1 cut(s) 1333
BfrI CTTAAG 1 cut(s) 128
BfuAI ACCTGC 3 cut(s) 573, 839, 988
BfuI GTATCC 1 cut(s) 1056
BisI GCNGC 3 cut(s) 603, 702, 1361
BlsI GCNGC 3 cut(s) 604, 703, 1362
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 4 cut(s) 83, 230, 898, 1063
BpmI CTGGAG 1 cut(s) 1130
Bpu10I CCTNAGC 1 cut(s) 1049
Bpu14I TTCGAA 1 cut(s) 918
BpuEI CTTGAG 1 cut(s) 1073
BpuMI CCSGG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 1140
BsaJI CCNNGG 2 cut(s) 476, 1058
BsaWI WCCGGW 1 cut(s) 1080
BsaXI ACNNNNNCTCC 6 cut(s) 193, 223, 835, 865, 956, 986
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 215, 652, 892, 893, 1302
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 476, 1058
BseGI GGATG 5 cut(s) 83, 472, 913, 1045, 1054
BseLI CCNNNNNNNGG 6 cut(s) 93, 215, 652, 892, 893, 1302
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 5 cut(s) 21, 384, 582, 672, 1323
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 2 cut(s) 440, 1259
BseXI GCAGC 3 cut(s) 614, 688, 1372
BseYI CCCAGC 1 cut(s) 704
BsgI GTGCAG 2 cut(s) 189, 867
BshFI GGCC 1 cut(s) 732
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 2 cut(s) 439, 1081
BslFI GGGAC 4 cut(s) 403, 564, 1143, 1323
BslI CCNNNNNNNGG 6 cut(s) 93, 215, 652, 892, 893, 1302
BsmAI GTCTC 5 cut(s) 140, 175, 422, 891, 1148
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 4 cut(s) 403, 564, 1143, 1323
BsmI GAATGC 1 cut(s) 1008
BsnI GGCC 1 cut(s) 732
BsoBI CYCGRG 1 cut(s) 477
Bsp119I TTCGAA 1 cut(s) 918
Bsp143I GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
Bsp19I CCATGG 1 cut(s) 1058
BspACI CCGC 3 cut(s) 13, 1037, 1263
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 5 cut(s) 22, 385, 583, 673, 1322
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 3 cut(s) 573, 839, 988
BspPI GGATC 3 cut(s) 374, 1138, 1313
BspT104I TTCGAA 1 cut(s) 918
BspTI CTTAAG 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 1263
BsrDI GCAATG 1 cut(s) 488
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 476, 1058
BssMI GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
BssT1I CCWWGG 1 cut(s) 1058
Bst4CI ACNGT 4 cut(s) 138, 433, 518, 765
Bst6I CTCTTC 4 cut(s) 238, 248, 501, 1375
BstAFI CTTAAG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 1140
BstBI TTCGAA 1 cut(s) 918
BstC8I GCNNGC 2 cut(s) 495, 720
BstDEI CTNAG 6 cut(s) 30, 393, 591, 681, 1049, 1309
BstDSI CCRYGG 1 cut(s) 1058
BstF5I GGATG 5 cut(s) 83, 472, 913, 1045, 1054
BstKTI GATC 7 cut(s) 83, 369, 565, 636, 991, 1133, 1308
BstMAI GTCTC 5 cut(s) 140, 175, 422, 891, 1148
BstMBI GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
BstMWI GCNNNNNNNGC 2 cut(s) 197, 794
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 438
BstSFI CTRYAG 1 cut(s) 1333
BstV1I GCAGC 3 cut(s) 614, 688, 1372
BstX2I RGATCY 3 cut(s) 366, 1130, 1305
BstYI RGATCY 3 cut(s) 366, 1130, 1305
BsuI GTATCC 1 cut(s) 1056
BsuRI GGCC 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 1058
BtsCI GGATG 5 cut(s) 83, 472, 913, 1045, 1054
BtsIMutI CAGTG 1 cut(s) 761
BveI ACCTGC 3 cut(s) 573, 839, 988
Cac8I GCNNGC 2 cut(s) 495, 720
CaiI CAGNNNCTG 3 cut(s) 369, 704, 1332
Cfr13I GGNCC 1 cut(s) 619
Csp6I GTAC 2 cut(s) 881, 1392
CviAII CATG 6 cut(s) 63, 494, 647, 739, 1059, 1096
CviQI GTAC 2 cut(s) 881, 1392
DdeI CTNAG 6 cut(s) 30, 393, 591, 681, 1049, 1309
DpnI GATC 7 cut(s) 82, 368, 564, 635, 990, 1132, 1307
DpnII GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
Eam1104I CTCTTC 4 cut(s) 238, 248, 501, 1375
EarI CTCTTC 4 cut(s) 238, 248, 501, 1375
Eco130I CCWWGG 1 cut(s) 1058
Eco47I GGWCC 1 cut(s) 619
Eco57I CTGAAG 4 cut(s) 76, 171, 434, 822
Eco88I CYCGRG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 1058
ErhI CCWWGG 1 cut(s) 1058
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 6 cut(s) 66, 497, 650, 742, 1062, 1099
FalI AAGNNNNNCTT 2 cut(s) 772, 804
FaqI GGGAC 4 cut(s) 403, 564, 1143, 1323
FatI CATG 6 cut(s) 62, 493, 646, 738, 1058, 1095
FbaI TGATCA 2 cut(s) 562, 633
Fnu4HI GCNGC 3 cut(s) 603, 702, 1361
FokI GGATG 5 cut(s) 70, 459, 920, 1041, 1052
Fsp4HI GCNGC 3 cut(s) 603, 702, 1361
FspBI CTAG 5 cut(s) 110, 123, 378, 629, 1389
GluI GCNGC 3 cut(s) 603, 702, 1361
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 1130
HaeIII GGCC 1 cut(s) 732
HapII CCGG 2 cut(s) 439, 1081
Hin1II CATG 6 cut(s) 66, 497, 650, 742, 1062, 1099
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HindIII AAGCTT 1 cut(s) 938
HpaII CCGG 2 cut(s) 439, 1081
HphI GGTGA 2 cut(s) 428, 1209
Hpy166II GTNNAC 4 cut(s) 436, 835, 881, 1394
Hpy188I TCNGA 9 cut(s) 414, 514, 567, 592, 814, 826, 1213, 1312, 1412
Hpy188III TCNNGA 6 cut(s) 78, 240, 364, 768, 1090, 1147
Hpy8I GTNNAC 4 cut(s) 436, 835, 881, 1394
HpyAV CCTTC 2 cut(s) 412, 823
HpyCH4III ACNGT 4 cut(s) 138, 433, 518, 765
HpyCH4IV ACGT 5 cut(s) 553, 837, 933, 1139, 1299
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 794
HpyF3I CTNAG 6 cut(s) 30, 393, 591, 681, 1049, 1309
HpySE526I ACGT 5 cut(s) 553, 837, 933, 1139, 1299
Hsp92II CATG 6 cut(s) 66, 497, 650, 742, 1062, 1099
Ksp22I TGATCA 2 cut(s) 562, 633
Kzo9I GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 3 cut(s) 614, 688, 1372
LweI GCATC 4 cut(s) 83, 230, 898, 1063
MaeI CTAG 5 cut(s) 110, 123, 378, 629, 1389
MaeII ACGT 5 cut(s) 553, 837, 933, 1139, 1299
MaeIII GTNAC 1 cut(s) 484
MalI GATC 7 cut(s) 82, 368, 564, 635, 990, 1132, 1307
MbiI CCGCTC 1 cut(s) 1263
MboI GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
MflI RGATCY 3 cut(s) 366, 1130, 1305
MluCI AATT 6 cut(s) 43, 186, 350, 637, 744, 817
MlyI GAGTC 6 cut(s) 170, 518, 893, 974, 1129, 1338
MmeI TCCRAC 2 cut(s) 111, 1260
MseI TTAA 3 cut(s) 129, 177, 891
MslI CAYNNNNRTG 1 cut(s) 956
MspA1I CMGCKG 3 cut(s) 701, 718, 1037
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 2 cut(s) 439, 1081
MspR9I CCNGG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 1008
MwoI GCNNNNNNNGC 2 cut(s) 197, 794
NciI CCSGG 1 cut(s) 440
NcoI CCATGG 1 cut(s) 1058
NdeII GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
NlaIII CATG 6 cut(s) 66, 497, 650, 742, 1062, 1099
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 484
NspI RCATGY 1 cut(s) 497
NspV TTCGAA 1 cut(s) 918
OliI CACNNNNGTG 1 cut(s) 956
PaeI GCATGC 1 cut(s) 497
PaqCI CACCTGC 1 cut(s) 839
PctI GAATGC 1 cut(s) 1008
PfeI GAWTC 5 cut(s) 1019, 1029, 1150, 1214, 1226
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 3 cut(s) 604, 703, 1362
PleI GAGTC 6 cut(s) 169, 517, 893, 973, 1128, 1337
PpsI GAGTC 6 cut(s) 169, 517, 893, 973, 1128, 1337
Ppu21I YACGTR 1 cut(s) 1140
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 704
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 619
PspPPI RGGWCCY 1 cut(s) 619
PstNI CAGNNNCTG 3 cut(s) 369, 704, 1332
PsuI RGATCY 3 cut(s) 366, 1130, 1305
PvuII CAGCTG 2 cut(s) 701, 718
RsaI GTAC 2 cut(s) 882, 1393
RsaNI GTAC 2 cut(s) 881, 1392
RseI CAYNNNNRTG 1 cut(s) 956
SaqAI TTAA 3 cut(s) 129, 177, 891
SatI GCNGC 3 cut(s) 603, 702, 1361
Sau3AI GATC 7 cut(s) 80, 366, 562, 633, 988, 1130, 1305
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 6 cut(s) 170, 518, 893, 974, 1129, 1338
ScrFI CCNGG 1 cut(s) 440
SfaNI GCATC 4 cut(s) 83, 230, 898, 1063
SfcI CTRYAG 1 cut(s) 1333
SfuI TTCGAA 1 cut(s) 918
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 956
SmlI CTYRAG 2 cut(s) 128, 1088
SmoI CTYRAG 2 cut(s) 128, 1088
SpeI ACTAGT 1 cut(s) 1388
SphI GCATGC 1 cut(s) 497
Sse9I AATT 6 cut(s) 43, 186, 350, 637, 744, 817
SsiI CCGC 3 cut(s) 13, 1037, 1263
SspI AATATT 2 cut(s) 337, 688
SspMI CTAG 5 cut(s) 110, 123, 378, 629, 1389
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 1058
TaaI ACNGT 4 cut(s) 138, 433, 518, 765
TaiI ACGT 5 cut(s) 556, 840, 936, 1142, 1302
TaqI TCGA 7 cut(s) 159, 331, 918, 1109, 1272, 1385, 1402
TasI AATT 6 cut(s) 43, 186, 350, 637, 744, 817
TatI WGTACW 2 cut(s) 880, 1391
TfiI GAWTC 5 cut(s) 1019, 1029, 1150, 1214, 1226
Tru1I TTAA 3 cut(s) 129, 177, 891
Tru9I TTAA 3 cut(s) 129, 177, 891
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 3 cut(s) 602, 701, 1360
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 519, 1056, 1218
TspRI CASTG 1 cut(s) 768
Van91I CCANNNNNTGG 1 cut(s) 652
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 619
XapI RAATTY 2 cut(s) 43, 350
XceI RCATGY 1 cut(s) 497
XspI CTAG 5 cut(s) 110, 123, 378, 629, 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.