Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008788

Physical Location & Seq

Genomic Coordinates Forward (+)

30899425 .. 30905123

Gene Structure 5699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAGGGCATACCGCACCCAGTACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCCGACGCGCCGGTTTGATTAAGGCCCTCACCACCGACGTTCAGAAGTTTTACCAGCAGTGCGATCCTGACAAGGAGAACTTGTGTCTATATGGACTGCCAAATGAGGCATGGGAAGTTAACCTTCCTGTTGAGGAGGTGCCTCCTGAGCTTCCTGAACCAGCATTAGGTATAAACTTCGCTAGAGATGGGATGGCGGAGAAGGACTGGTTGTCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGCTTTGGGTTTGGCAAAAATGAAAGAAAGAAGCTCTTTCAGATGATAAATGATCTCCCCACCATATTTGAAGTTGTGACAGGCAATGTTAGGCAGCCTATGAACCAATCTGGTATTCATCACAACAGTAGCAAGAGCAAATCAAGTGGGAAGCCGTCTCGGCAACCTGAAATCAACCCAAGTAAAGGGGTAAAGATGTCTCCACTAGCCAAAGAAGACGAGGAAAGCGGGGAAGAAGAAGAAGAAGATGATGAACAAGGTGCTACTTGCGGGGCGTGTGGAGACAACTATGGCGCTGACGAGTTCTGGATTTGCTGTGATGTGTGTGAGAGATGGTTTCATGGGAAATGTGTGAAGATTACACCTGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAGCAAGAGGGCTAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

254

Amino Acids

28.47

Weight (kDa)

5.29

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	8.5e-69	Alfin
PHD	PF00628	201 - 247	2.4e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12680
fragaria_vesca	FvH4_5g35980
malus_domestica	MD08G1191300.v1.1 MD15G1379900.v1.1
prunus_persica	Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1
pyrus_communis	pycom08g16470
rosa_chinensis	RchiOBHm_Chr7g0237721
rosa_laevigata	RLG00000000974
rosa_multiflora	Rmu_ssc0000067.1_g000040
rosa_roxburghii	Rroxscaffold_3G00223800
rosa_rugosa	Rorug07G0307400 Rorug07G0307500 Rorug07G0307500 Rorug07G0307600
rosa_samantha	Rh7AG463400 Rh7BG433600 Rh7CG480400 Rh7DG449300
rosa_wichuraiana	Rw7G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AccB1I	GGYRCC	1 cut(s)	199
AccII	CGCG	1 cut(s)	69
AciI	CCGC	4 cut(s)	14, 257, 561, 603
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	31, 40
AfaI	GTAC	2 cut(s)	24, 725
AfiI	CCNNNNNNNGG	2 cut(s)	227, 518
AgsI	TTSAA	1 cut(s)	404
AhdI	GACNNNNNGTC	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	2 cut(s)	211, 367
AluI	AGCT	2 cut(s)	211, 367
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	495, 537, 609
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	61, 84
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	427
AspLEI	GCGC	2 cut(s)	71, 629
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	82
BaeGI	GKGCMC	2 cut(s)	334, 734
BanI	GGYRCC	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	37, 555
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	3 cut(s)	242, 247, 660
BceAI	ACGGC	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	495, 537, 609
BfaI	CTAG	3 cut(s)	243, 539, 756
BfoI	RGCGCY	1 cut(s)	630
BfuAI	ACCTGC	1 cut(s)	706
BglI	GCCNNNNNGGC	1 cut(s)	493
BisI	GCNGC	1 cut(s)	428
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	429
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	37, 555
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	708
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 518
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	20, 272
Bse3DI	GCAATG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	227, 518
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	198, 699
BseNI	ACTGG	2 cut(s)	20, 272
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	2 cut(s)	334, 734
BseXI	GCAGC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	63, 86
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	227, 518
BsmAI	GTCTC	3 cut(s)	495, 537, 609
BsmBI	CGTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	63, 86
Bsp1286I	GDGCHC	2 cut(s)	334, 734
Bsp143I	GATC	2 cut(s)	124, 385
Bsp1720I	GCTNAGC	1 cut(s)	708
BspACI	CCGC	4 cut(s)	14, 257, 561, 603
BspANI	GGCC	2 cut(s)	63, 86
BspCNI	CTCAG	2 cut(s)	199, 700
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	20, 272
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	2 cut(s)	124, 385
Bst4CI	ACNGT	3 cut(s)	34, 293, 461
BstC8I	GCNNGC	2 cut(s)	309, 334
BstDEI	CTNAG	2 cut(s)	207, 708
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	2 cut(s)	71, 629
BstKTI	GATC	2 cut(s)	127, 388
BstMAI	GTCTC	3 cut(s)	495, 537, 609
BstMBI	GATC	2 cut(s)	124, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 493, 718, 738
BstSLI	GKGCMC	2 cut(s)	334, 734
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	2 cut(s)	37, 555
BsuRI	GGCC	2 cut(s)	63, 86
BtsCI	GGATG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	39, 125, 298
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	309, 334
CfoI	GCGC	2 cut(s)	71, 629
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	23, 724
CspCI	CAANNNNNGTGG	4 cut(s)	382, 417, 460, 495
CviAII	CATG	3 cut(s)	171, 300, 674
CviJI	RGCY	9 cut(s)	63, 86, 211, 367, 430, 487, 542, 707, 755
CviKI_1	RGCY	9 cut(s)	63, 86, 211, 367, 430, 487, 542, 707, 755
CviQI	GTAC	2 cut(s)	23, 724
DdeI	CTNAG	2 cut(s)	207, 708
DpnI	GATC	2 cut(s)	126, 387
DpnII	GATC	2 cut(s)	124, 385
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	31, 40
EcoO109I	RGGNCCY	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	3 cut(s)	174, 303, 677
FalI	AAGNNNNNCTT	6 cut(s)	125, 157, 168, 200, 353, 385
FatI	CATG	3 cut(s)	170, 299, 673
FauI	CCCGC	2 cut(s)	554, 596
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	3 cut(s)	243, 539, 756
GlaI	GCGC	2 cut(s)	70, 628
GluI	GCNGC	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	63, 86
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	71, 629
Hin1II	CATG	3 cut(s)	174, 303, 677
Hin6I	GCGC	2 cut(s)	69, 627
HinP1I	GCGC	2 cut(s)	69, 627
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	296
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	3 cut(s)	181, 289, 332
Hpy188I	TCNGA	3 cut(s)	59, 105, 375
Hpy188III	TCNNGA	4 cut(s)	128, 206, 215, 640
Hpy8I	GTNNAC	3 cut(s)	181, 289, 332
Hpy99I	CGWCG	2 cut(s)	69, 101
HpyAV	CCTTC	2 cut(s)	194, 256
HpyCH4III	ACNGT	3 cut(s)	34, 293, 461
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	284, 317, 332, 701, 741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 493, 718, 738
HpyF3I	CTNAG	2 cut(s)	207, 708
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	174, 303, 677
HspAI	GCGC	2 cut(s)	69, 627
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	124, 385
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	3 cut(s)	243, 539, 756
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	126, 387
MboI	GATC	2 cut(s)	124, 385
MboII	GAAGA	8 cut(s)	37, 560, 578, 581, 584, 587, 590, 700
MhlI	GDGCHC	2 cut(s)	334, 734
MseI	TTAA	2 cut(s)	81, 180
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	317
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	4 cut(s)	208, 493, 718, 738
NdeII	GATC	2 cut(s)	124, 385
NlaIII	CATG	3 cut(s)	174, 303, 677
NlaIV	GGNNCC	1 cut(s)	201
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	706
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	2 cut(s)	24, 725
RsaNI	GTAC	2 cut(s)	23, 724
SaqAI	TTAA	2 cut(s)	81, 180
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	2 cut(s)	124, 385
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	334, 734
SsiI	CCGC	4 cut(s)	14, 257, 561, 603
SspMI	CTAG	3 cut(s)	243, 539, 756
TaaI	ACNGT	3 cut(s)	34, 293, 461
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	28
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	81, 180
Tru9I	TTAA	2 cut(s)	81, 180
TscAI	CASTG	3 cut(s)	39, 125, 298
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	6 cut(s)	288, 369, 440, 449, 600, 662
TspRI	CASTG	3 cut(s)	39, 125, 298
VneI	GTGCAC	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	3 cut(s)	243, 539, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.