Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Forward (+)

30922515 .. 30933073

Gene Structure 10559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGTCGTCTGCAACTCTTTCGTTGTTGTGCTCCTCCTTCGCATCCCATTGCAAAATCTCACCTCCCGCCACAACCTCCCTCTCTCAATTCAACTCCCTCTCCCTCTCTTCTTCTTCTTCGTCTTCGCCGCACAAGCTCTCCTCCTCCTCTCCGCGTCCCACATTCCCTCTCCTCCCCAAGTCGTCGGAGATTGACTCCGCCGTCCTCGAAGCCGAGCTTCAAGCTCCCGAGCCTGACGCCGAACCTCTTGCTTCCGAGGAGCCTGCCCCCGCCGCCTTGGAACTTGCTGAATCCGAACCAGCCCCAAAACGCGAGGAGATTTTCGCTGTTGTTATGATTGGAGGGCGCCAGTACATTGTTATACCTGGACGATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGGTTGTTCTGAACAAGGTGCTGCTTGTGGGAACAAAAACAACTACCTACATTGGAAAACCAATAGTGACAAATGCTGCTATACATGCTGTAGTTGAAGAGCAAGGACTGAATGACAAAGTGGTTGTCTTCAAGTATAAGAAGAAGAAAAATTATAGGAGAAACATTGGTCACCGACAGCCAAATTCACGCATAAGGATAACAGCTATCACCGGCTATCAAGACTATCCAGCAGTTACACTTGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

222

Amino Acids

24.04

Weight (kDa)

9.26

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	109 - 209	4.3e-30	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	348
AccII	CGCG	2 cut(s)	157, 315
AciI	CCGC	6 cut(s)	69, 131, 155, 201, 273, 276
AcsI	RAATTY	1 cut(s)	601
AcyI	GRCGYC	3 cut(s)	5, 240, 349
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	5 cut(s)	94, 224, 515, 550, 662
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	139, 220, 227, 623
AluI	AGCT	4 cut(s)	139, 220, 227, 623
Alw21I	GWGCWC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	439, 494
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
AspLEI	GCGC	2 cut(s)	351, 393
AsuHPI	GGTGA	3 cut(s)	54, 581, 619
AvaI	CYCGRG	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	348
BbsI	GAAGAC	2 cut(s)	117, 538
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	426, 481
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	5 cut(s)	37, 233, 248, 267, 282
BciT130I	CCWGG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	2 cut(s)	352, 394
BisI	GCNGC	4 cut(s)	131, 276, 440, 495
BlsI	GCNGC	4 cut(s)	132, 277, 441, 496
Bme1390I	CCNGG	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	3 cut(s)	264, 350, 403
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	53
BpiI	GAAGAC	2 cut(s)	117, 538
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BsaHI	GRCGYC	3 cut(s)	5, 240, 349
BsaJI	CCNNGG	3 cut(s)	258, 279, 405
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 125, 155, 393, 423
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	258, 279, 405
BseGI	GGATG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	7 cut(s)	25, 133, 136, 139, 164, 275, 332
BseXI	GCAGC	2 cut(s)	426, 481
Bsh1236I	CGCG	2 cut(s)	157, 315
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	35
BspACI	CCGC	6 cut(s)	69, 131, 155, 201, 273, 276
BspFNI	CGCG	2 cut(s)	157, 315
BspLI	GGNNCC	3 cut(s)	264, 350, 403
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	258, 279, 405
BssNI	GRCGYC	3 cut(s)	5, 240, 349
BssT1I	CCWWGG	2 cut(s)	279, 405
Bst2UI	CCWGG	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	115, 510
BstACI	GRCGYC	3 cut(s)	5, 240, 349
BstC8I	GCNNGC	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	2 cut(s)	157, 315
BstH2I	RGCGCY	2 cut(s)	352, 394
BstHHI	GCGC	2 cut(s)	351, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 136, 275, 503
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	2 cut(s)	157, 315
BstV1I	GCAGC	2 cut(s)	426, 481
BstV2I	GAAGAC	2 cut(s)	117, 538
BtsCI	GGATG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	2 cut(s)	351, 393
Cfr10I	RCCGGY	1 cut(s)	629
CseI	GACGC	2 cut(s)	146, 248
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	503
CviQI	GTAC	1 cut(s)	355
DinI	GGCGCC	1 cut(s)	350
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	2 cut(s)	115, 510
EarI	CTCTTC	2 cut(s)	115, 510
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	279, 405
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	279, 405
EgeI	GGCGCC	1 cut(s)	350
EheI	GGCGCC	1 cut(s)	350
ErhI	CCWWGG	2 cut(s)	279, 405
FaeI	CATG	1 cut(s)	506
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	1 cut(s)	502
FauI	CCCGC	2 cut(s)	76, 280
Fnu4HI	GCNGC	4 cut(s)	131, 276, 440, 495
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	4 cut(s)	131, 276, 440, 495
GlaI	GCGC	2 cut(s)	350, 392
GluI	GCNGC	4 cut(s)	131, 276, 440, 495
HaeII	RGCGCY	2 cut(s)	352, 394
HapII	CCGG	1 cut(s)	630
HgaI	GACGC	2 cut(s)	146, 248
HhaI	GCGC	2 cut(s)	351, 393
Hin1I	GRCGYC	3 cut(s)	5, 240, 349
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	2 cut(s)	349, 391
HinP1I	GCGC	2 cut(s)	349, 391
HinfI	GANTC	3 cut(s)	197, 293, 662
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	3 cut(s)	54, 581, 619
Hpy188I	TCNGA	4 cut(s)	190, 259, 298, 429
Hpy188III	TCNNGA	2 cut(s)	230, 638
Hpy99I	CGWCG	2 cut(s)	10, 190
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	14, 54
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 136, 275, 503
Hsp92I	GRCGYC	3 cut(s)	5, 240, 349
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	2 cut(s)	349, 391
KasI	GGCGCC	1 cut(s)	348
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	4 cut(s)	38, 232, 262, 401
LpnPI	CCDG	8 cut(s)	249, 279, 315, 354, 365, 381, 643, 660
Lsp1109I	GCAGC	2 cut(s)	426, 481
LweI	GCATC	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	484, 587, 652
MboII	GAAGA	9 cut(s)	102, 105, 108, 111, 117, 527, 538, 571, 574
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	89, 568, 601
Mly113I	GGCGCC	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	168
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	2 cut(s)	157, 315
MwoI	GCNNNNNNNGC	4 cut(s)	11, 136, 275, 503
NarI	GGCGCC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	3 cut(s)	264, 350, 403
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	484, 587
NspI	RCATGY	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	510
PfeI	GAWTC	2 cut(s)	293, 662
PkrI	GCNGC	4 cut(s)	132, 277, 441, 496
PleI	GAGTC	1 cut(s)	191
PluTI	GGCGCC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	264, 350, 403
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SapI	GCTCTTC	1 cut(s)	510
SatI	GCNGC	4 cut(s)	131, 276, 440, 495
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	507
SfoI	GGCGCC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	89, 568, 601
SsiI	CCGC	6 cut(s)	69, 131, 155, 201, 273, 276
SspDI	GGCGCC	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	2 cut(s)	279, 405
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	89, 568, 601
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	2 cut(s)	133, 278
TfiI	GAWTC	2 cut(s)	293, 662
TseFI	GTSAC	2 cut(s)	484, 587
TseI	GCWGC	2 cut(s)	439, 494
Tsp45I	GTSAC	2 cut(s)	484, 587
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.