Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Forward (+)

12620911 .. 12624732

Gene Structure 3822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTCAGTATACCCAAACCTTAAACCCTCCCAAAACCCTCATCCCCAAGCTCCCAAATCCCAACCCCGGCCCTCTTTCTCCTCCTTCAAAACCACAAAACCCAAATCCAAAAGCTTCCCAACACTCTCTGTCTCGGCCCAAAATCAACGGCCCCTGGATGCCCTGCTCAACGGTTCTCGCAAACAAGAGGTGCTTGGCGCTATTAGGAGTTCCTTGTCAAACTGTCTTTCTGAAATCAATCTCCACCTCACAGTTGGTGGCCTCAAATCCAAAAGCAGAGGCAAGTTTAGCTAGAGTTCTCATTCGGGCAATCCATTTATGGGTTAGGGATGTTTATGACAGTGGTGATTATCTAGTTATGGTCACCACAGACAGGCAGAGTTCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTAATGAAACAAGTTTATGGTGGTTTGACAAAACGCGACATATAACATCAAATGCAGTTGTATCGGTCCCAGATGAAAATGTAACAATTGCAAAGAAATGTTCTGTTTTTCCGATGGAGGTTGTGGTCAGAGGTTTTGTGATGGGAAGTACTGATACATCATTATGGACAGTCTATAGAAGTGGCAGCTTGGTAAAGAGCCAAAAGCTTCCTGCTAATATACTCACACCAACAACTAAGGCTGCAGATCATGACGTTCCTGTTACTCCAGATGAGGTAATTGAACGTGGACTGATGAGTCAACCGGATTATGATGAAGTAAGTAGGAAAGCATTAAGCTTGTTCGAGTATGGACATCGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGCGACATGATGATTCCGTACATTTTATTGATGAGATATATTTTCTTGTACAAGACAATCACAAAATCAAAATTCAAGATGCCTTCGACAGAGGTAAAGAGCTTGTCTTGATTGATATTCTATTTTTGTGCACAAATAATAGTGACATAATCCGAGCTTCTTCCATTCAGGAGCCAATACATGATCGAATATCTCGCAATGTGGCACAAGCACTGTCATATCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

357

Amino Acids

39.83

Weight (kDa)

8.68

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	109 - 293	1.6e-45	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	726
AccI	GTMKAC	2 cut(s)	11, 819
AccII	CGCG	1 cut(s)	466
AcsI	RAATTY	3 cut(s)	396, 833, 912
AfaI	GTAC	3 cut(s)	580, 861, 891
AfiI	CCNNNNNNNGG	4 cut(s)	68, 322, 375, 419
AgsI	TTSAA	3 cut(s)	90, 713, 917
AjnI	CCWGG	2 cut(s)	155, 423
AluBI	AGCT	8 cut(s)	52, 116, 293, 618, 637, 768, 943, 998
AluI	AGCT	8 cut(s)	52, 116, 293, 618, 637, 768, 943, 998
Alw21I	GWGCWC	1 cut(s)	974
Alw26I	GTCTC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	970
AoxI	GGCC	5 cut(s)	70, 137, 151, 261, 421
ApaLI	GTGCAC	1 cut(s)	970
ApeKI	GCWGC	2 cut(s)	615, 671
ApoI	RAATTY	3 cut(s)	396, 833, 912
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	5 cut(s)	71, 138, 152, 427, 496
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	358, 359
AvaII	GGWCC	2 cut(s)	427, 496
BaeGI	GKGCMC	1 cut(s)	974
BarI	GAAGNNNNNNTAC	2 cut(s)	568, 600
Bbv12I	GWGCWC	1 cut(s)	974
BbvI	GCAGC	2 cut(s)	627, 658
BccI	CCATC	2 cut(s)	538, 565
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	2 cut(s)	157, 425
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	2 cut(s)	294, 356
BfmI	CTRYAG	2 cut(s)	604, 672
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	2 cut(s)	616, 672
BlsI	GCNGC	2 cut(s)	617, 673
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	3 cut(s)	69, 157, 425
Bme18I	GGWCC	2 cut(s)	427, 496
BmgT120I	GGNCC	5 cut(s)	71, 138, 152, 427, 496
BmiI	GGNNCC	3 cut(s)	154, 498, 1014
BmrFI	CCNGG	3 cut(s)	69, 157, 425
BmsI	GCATC	2 cut(s)	150, 910
BpmI	CTGGAG	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	67, 155
BsaWI	WCCGGW	1 cut(s)	733
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 322, 375, 419
Bse3DI	GCAATG	1 cut(s)	1045
BseBI	CCWGG	2 cut(s)	157, 425
BseDI	CCNNGG	2 cut(s)	67, 155
BseGI	GGATG	3 cut(s)	42, 165, 337
BseLI	CCNNNNNNNGG	4 cut(s)	68, 322, 375, 419
BseMI	GCAATG	1 cut(s)	1045
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	974
BseXI	GCAGC	2 cut(s)	627, 658
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	5 cut(s)	72, 139, 153, 263, 423
BsiHKAI	GWGCWC	1 cut(s)	974
BsiSI	CCGG	2 cut(s)	69, 734
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	4 cut(s)	68, 322, 375, 419
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	5 cut(s)	72, 139, 153, 263, 423
Bsp1286I	GDGCHC	1 cut(s)	974
Bsp1407I	TGTACA	1 cut(s)	889
Bsp143I	GATC	2 cut(s)	676, 1024
BspANI	GGCC	5 cut(s)	72, 139, 153, 263, 423
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	3 cut(s)	154, 498, 1014
BspMAI	CTGCAG	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	1045
BsrGI	TGTACA	1 cut(s)	889
BssECI	CCNNGG	2 cut(s)	67, 155
BssMI	GATC	2 cut(s)	676, 1024
BssNAI	GTATAC	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	157, 425
Bst4CI	ACNGT	6 cut(s)	175, 226, 255, 344, 601, 1056
BstAUI	TGTACA	1 cut(s)	889
BstDEI	CTNAG	2 cut(s)	6, 666
BstEII	GGTNACC	1 cut(s)	364
BstF5I	GGATG	3 cut(s)	42, 165, 337
BstFNI	CGCG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	679, 1027
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	676, 1024
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	157, 425
BstPI	GGTNACC	1 cut(s)	364
BstSCI	CCNGG	3 cut(s)	67, 155, 423
BstSFI	CTRYAG	2 cut(s)	604, 672
BstSLI	GKGCMC	1 cut(s)	974
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	627, 658
BstZ17I	GTATAC	1 cut(s)	12
BsuRI	GGCC	5 cut(s)	72, 139, 153, 263, 423
BtsCI	GGATG	3 cut(s)	42, 165, 337
BtsIMutI	CAGTG	2 cut(s)	349, 1052
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	5 cut(s)	71, 138, 152, 427, 496
Csp6I	GTAC	3 cut(s)	579, 860, 890
CviAII	CATG	4 cut(s)	680, 803, 848, 1022
CviQI	GTAC	3 cut(s)	579, 860, 890
DdeI	CTNAG	2 cut(s)	6, 666
DpnI	GATC	2 cut(s)	678, 1026
DpnII	GATC	2 cut(s)	676, 1024
DraI	TTTAAA	1 cut(s)	418
DrdI	GACNNNNNNGTC	1 cut(s)	726
DseDI	GACNNNNNNGTC	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	427, 496
Eco91I	GGTNACC	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	155, 423
FaeI	CATG	4 cut(s)	683, 806, 851, 1025
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	4 cut(s)	679, 802, 847, 1021
FblI	GTMKAC	2 cut(s)	11, 819
Fnu4HI	GCNGC	2 cut(s)	616, 672
FokI	GGATG	3 cut(s)	29, 172, 344
Fsp4HI	GCNGC	2 cut(s)	616, 672
FspBI	CTAG	2 cut(s)	294, 356
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	616, 672
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	5 cut(s)	72, 139, 153, 263, 423
HapII	CCGG	2 cut(s)	69, 734
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	683, 806, 851, 1025
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	731
HindII	GTYRAC	1 cut(s)	731
HindIII	AAGCTT	3 cut(s)	114, 635, 766
HinfI	GANTC	2 cut(s)	727, 854
HpaII	CCGG	2 cut(s)	69, 734
HphI	GGTGA	2 cut(s)	358, 359
Hpy166II	GTNNAC	5 cut(s)	12, 719, 731, 820, 972
Hpy188I	TCNGA	5 cut(s)	234, 543, 560, 995, 1065
Hpy188III	TCNNGA	5 cut(s)	680, 698, 917, 949, 1010
Hpy8I	GTNNAC	5 cut(s)	12, 719, 731, 820, 972
HpyAV	CCTTC	2 cut(s)	96, 934
HpyCH4III	ACNGT	6 cut(s)	175, 226, 255, 344, 601, 1056
HpyCH4IV	ACGT	2 cut(s)	684, 715
HpyCH4V	TGCA	4 cut(s)	485, 521, 674, 972
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	6, 666
HpySE526I	ACGT	2 cut(s)	684, 715
Hsp92II	CATG	4 cut(s)	683, 806, 851, 1025
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	676, 1024
LmnI	GCTCC	3 cut(s)	57, 799, 1012
Lsp1109I	GCAGC	2 cut(s)	627, 658
LweI	GCATC	2 cut(s)	150, 910
MaeI	CTAG	2 cut(s)	294, 356
MaeII	ACGT	2 cut(s)	684, 715
MaeIII	GTNAC	4 cut(s)	364, 511, 691, 983
MalI	GATC	2 cut(s)	678, 1026
MboI	GATC	2 cut(s)	676, 1024
MboII	GAAGA	1 cut(s)	993
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	974
MluCI	AATT	5 cut(s)	396, 516, 708, 833, 912
MlyI	GAGTC	1 cut(s)	736
MseI	TTAA	4 cut(s)	23, 417, 432, 764
MslI	CAYNNNNRTG	1 cut(s)	592
MspI	CCGG	2 cut(s)	69, 734
MspR9I	CCNGG	3 cut(s)	69, 157, 425
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	2 cut(s)	157, 425
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	676, 1024
NlaIII	CATG	4 cut(s)	683, 806, 851, 1025
NlaIV	GGNNCC	3 cut(s)	154, 498, 1014
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	364, 983
PagI	TCATGA	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	854
PkrI	GCNGC	2 cut(s)	617, 673
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	155, 423
PspEI	GGTNACC	1 cut(s)	364
PspGI	CCWGG	2 cut(s)	155, 423
PspN4I	GGNNCC	3 cut(s)	154, 498, 1014
PspPI	GGNCC	5 cut(s)	71, 138, 152, 427, 496
PspPPI	RGGWCCY	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	676
RsaI	GTAC	3 cut(s)	580, 861, 891
RsaNI	GTAC	3 cut(s)	579, 860, 890
RseI	CAYNNNNRTG	1 cut(s)	592
SaqAI	TTAA	4 cut(s)	23, 417, 432, 764
SatI	GCNGC	2 cut(s)	616, 672
Sau3AI	GATC	2 cut(s)	676, 1024
Sau96I	GGNCC	5 cut(s)	71, 138, 152, 427, 496
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	3 cut(s)	69, 157, 425
SduI	GDGCHC	1 cut(s)	974
SfaNI	GCATC	2 cut(s)	150, 910
SfcI	CTRYAG	2 cut(s)	604, 672
SinI	GGWCC	2 cut(s)	427, 496
SmiMI	CAYNNNNRTG	1 cut(s)	592
Sse9I	AATT	5 cut(s)	396, 516, 708, 833, 912
SspMI	CTAG	2 cut(s)	294, 356
StyD4I	CCNGG	3 cut(s)	67, 155, 423
TaaI	ACNGT	6 cut(s)	175, 226, 255, 344, 601, 1056
TaiI	ACGT	2 cut(s)	687, 718
TaqI	TCGA	3 cut(s)	774, 927, 1027
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	5 cut(s)	396, 516, 708, 833, 912
TatI	WGTACW	2 cut(s)	578, 889
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	4 cut(s)	23, 417, 432, 764
Tru9I	TTAA	4 cut(s)	23, 417, 432, 764
TscAI	CASTG	2 cut(s)	349, 1059
TseFI	GTSAC	2 cut(s)	364, 983
TseI	GCWGC	2 cut(s)	615, 671
Tsp45I	GTSAC	2 cut(s)	364, 983
TspDTI	ATGAA	5 cut(s)	375, 450, 519, 759, 846
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	2 cut(s)	349, 1059
VneI	GTGCAC	1 cut(s)	970
VpaK11BI	GGWCC	2 cut(s)	427, 496
XapI	RAATTY	3 cut(s)	396, 833, 912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmiI	GTMKAC	2 cut(s)	11, 819
XspI	CTAG	2 cut(s)	294, 356
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.