Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

37379879 .. 37385791

Gene Structure 5913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATTGAAATAGGCATACAAATCGTAGTCGCAAGTATAGTACTTTCCAGTGAAACTCCAAAACCAAATGGCTCAGTATACCCAAACCTTAAACCCTCCCAAAACCCTAAACCCCGGCCCTCTTTCTCCTCCTTCAAAACCACAAAACCCAAATCCAAAAGCTTCCCAACACTCTCTGTCTCGGCCCAAAATCAACGGCCCCTGGATGCCCTGCTCAACGGTTCTCGCAAACAAGAGGTGCTTGGCGCTATTAGGAGTTCCTTGTCAAACTGTCTTTCTGAAATCAATCTCCACCTCACAGTTGGTGGCCTCAAATCCAAAAGCAGAGGCAAGGTTAGGGATGTTTATGACAGTGGTGATTATCTACTTATGGTCACCACAGACAGGCAGAGTTCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTAATGAAACAAGTTTATGGTGGTTTGACAAAACTCGACATATAACATCAAATGCAGTTGTATCGGTCCCAGATGAAAATGTAACAATTGCAAAGAAATGTTCTGTTTTTCCGGTGGAGGTTGTGGTCAGAGGTTTTGTGATGGGAAGTACTGATACATCATTATGGACAGTCTATAGAAGCTTGGTAAAGAGCCAAAATCTTCCTGCTAATATACTCACACCAACAACTAAGGCTGCAGATCATGACGTTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGTCAACCCGATTATGATGAAGTAAGTAGGAAAGCATTAAGCTTGATCGAGTATGGACATCGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGCGACACGATGATTCCATGCATTTGATTGATGAGATATATTTTCTTGTACAAGACAATCACAAAATCAAAATTCAAGATGCCTTCAACAGAGGAGCCAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

316

Amino Acids

35.15

Weight (kDa)

8.89

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	108 - 294	5.8e-49	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	729
AccI	GTMKAC	2 cut(s)	78, 822
AcsI	RAATTY	3 cut(s)	405, 836, 915
AfaI	GTAC	3 cut(s)	42, 589, 894
AfiI	CCNNNNNNNGG	2 cut(s)	384, 428
AgsI	TTSAA	5 cut(s)	8, 136, 716, 920, 931
AjnI	CCWGG	2 cut(s)	201, 432
AluBI	AGCT	3 cut(s)	162, 621, 771
AluI	AGCT	3 cut(s)	162, 621, 771
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	5 cut(s)	116, 183, 197, 307, 430
ApeKI	GCWGC	1 cut(s)	674
ApoI	RAATTY	3 cut(s)	405, 836, 915
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	5 cut(s)	117, 184, 198, 436, 505
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	367, 368
AvaII	GGWCC	2 cut(s)	436, 505
BarI	GAAGNNNNNNTAC	2 cut(s)	577, 609
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	1 cut(s)	574
BceAI	ACGGC	1 cut(s)	212
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 483, 517
BciT130I	CCWGG	2 cut(s)	203, 434
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	2 cut(s)	613, 675
BfoI	RGCGCY	1 cut(s)	249
BisI	GCNGC	1 cut(s)	675
BlsI	GCNGC	1 cut(s)	676
BmcAI	AGTACT	2 cut(s)	42, 589
Bme1390I	CCNGG	3 cut(s)	115, 203, 434
Bme18I	GGWCC	2 cut(s)	436, 505
BmgT120I	GGNCC	5 cut(s)	117, 184, 198, 436, 505
BmiI	GGNNCC	3 cut(s)	200, 507, 940
BmrFI	CCNGG	3 cut(s)	115, 203, 434
BmsI	GCATC	2 cut(s)	196, 913
BpmI	CTGGAG	1 cut(s)	684
BpuMI	CCSGG	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	113, 201
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	794, 824
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 428
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	203, 434
BseDI	CCNNGG	2 cut(s)	113, 201
BseGI	GGATG	2 cut(s)	211, 346
BseLI	CCNNNNNNNGG	2 cut(s)	384, 428
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	2 cut(s)	118, 951
BseXI	GCAGC	1 cut(s)	661
BshFI	GGCC	5 cut(s)	118, 185, 199, 309, 432
BsiSI	CCGG	2 cut(s)	115, 551
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	384, 428
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	5 cut(s)	118, 185, 199, 309, 432
Bsp1407I	TGTACA	1 cut(s)	892
Bsp143I	GATC	2 cut(s)	679, 774
BspANI	GGCC	5 cut(s)	118, 185, 199, 309, 432
BspCNI	CTCAG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	200, 507, 940
BspMAI	CTGCAG	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	892
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	113, 201
BssMI	GATC	2 cut(s)	679, 774
BssNAI	GTATAC	1 cut(s)	79
Bst1107I	GTATAC	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	203, 434
Bst4CI	ACNGT	5 cut(s)	221, 272, 301, 353, 610
BstAUI	TGTACA	1 cut(s)	892
BstDEI	CTNAG	2 cut(s)	73, 669
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	211, 346
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	682, 777
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	679, 774
BstNI	CCWGG	2 cut(s)	203, 434
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	3 cut(s)	113, 201, 432
BstSFI	CTRYAG	2 cut(s)	613, 675
BstV1I	GCAGC	1 cut(s)	661
BstZ17I	GTATAC	1 cut(s)	79
BsuRI	GGCC	5 cut(s)	118, 185, 199, 309, 432
BtsCI	GGATG	2 cut(s)	211, 346
BtsIMutI	CAGTG	2 cut(s)	55, 358
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	5 cut(s)	117, 184, 198, 436, 505
Csp6I	GTAC	3 cut(s)	41, 588, 893
CviAII	CATG	4 cut(s)	683, 806, 862, 948
CviQI	GTAC	3 cut(s)	41, 588, 893
DdeI	CTNAG	2 cut(s)	73, 669
DpnI	GATC	2 cut(s)	681, 776
DpnII	GATC	2 cut(s)	679, 774
DraI	TTTAAA	1 cut(s)	427
DrdI	GACNNNNNNGTC	1 cut(s)	729
DseDI	GACNNNNNNGTC	1 cut(s)	729
Eco47I	GGWCC	2 cut(s)	436, 505
Eco91I	GGTNACC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	201, 432
EcoT22I	ATGCAT	1 cut(s)	867
FaeI	CATG	4 cut(s)	686, 809, 865, 951
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	4 cut(s)	682, 805, 861, 947
FblI	GTMKAC	2 cut(s)	78, 822
Fnu4HI	GCNGC	1 cut(s)	675
FokI	GGATG	2 cut(s)	218, 353
Fsp4HI	GCNGC	1 cut(s)	675
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	5 cut(s)	118, 185, 199, 309, 432
HapII	CCGG	2 cut(s)	115, 551
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	686, 809, 865, 951
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HindIII	AAGCTT	3 cut(s)	160, 619, 769
HinfI	GANTC	2 cut(s)	730, 857
HpaII	CCGG	2 cut(s)	115, 551
HphI	GGTGA	2 cut(s)	367, 368
Hpy166II	GTNNAC	4 cut(s)	79, 722, 734, 823
Hpy188I	TCNGA	2 cut(s)	280, 569
Hpy188III	TCNNGA	3 cut(s)	683, 701, 920
Hpy8I	GTNNAC	4 cut(s)	79, 722, 734, 823
HpyAV	CCTTC	2 cut(s)	142, 937
HpyCH4III	ACNGT	5 cut(s)	221, 272, 301, 353, 610
HpyCH4IV	ACGT	2 cut(s)	687, 718
HpyCH4V	TGCA	4 cut(s)	494, 530, 677, 865
HpyF3I	CTNAG	2 cut(s)	73, 669
HpySE526I	ACGT	2 cut(s)	687, 718
Hsp92II	CATG	4 cut(s)	686, 809, 865, 951
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	679, 774
LmnI	GCTCC	2 cut(s)	802, 938
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	2 cut(s)	196, 913
MaeII	ACGT	2 cut(s)	687, 718
MaeIII	GTNAC	3 cut(s)	373, 520, 694
MalI	GATC	2 cut(s)	681, 776
MboI	GATC	2 cut(s)	679, 774
MboII	GAAGA	1 cut(s)	632
MfeI	CAATTG	1 cut(s)	525
MluCI	AATT	5 cut(s)	405, 525, 711, 836, 915
MlyI	GAGTC	1 cut(s)	739
Mph1103I	ATGCAT	1 cut(s)	867
MseI	TTAA	4 cut(s)	90, 426, 441, 767
MslI	CAYNNNNRTG	1 cut(s)	601
MspI	CCGG	2 cut(s)	115, 551
MspR9I	CCNGG	3 cut(s)	115, 203, 434
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	203, 434
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	679, 774
NlaIII	CATG	4 cut(s)	686, 809, 865, 951
NlaIV	GGNNCC	3 cut(s)	200, 507, 940
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	867
PagI	TCATGA	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	857
PkrI	GCNGC	1 cut(s)	676
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
PpuMI	RGGWCCY	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	201, 432
PspEI	GGTNACC	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	201, 432
PspN4I	GGNNCC	3 cut(s)	200, 507, 940
PspPI	GGNCC	5 cut(s)	117, 184, 198, 436, 505
PspPPI	RGGWCCY	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	679
RsaI	GTAC	3 cut(s)	42, 589, 894
RsaNI	GTAC	3 cut(s)	41, 588, 893
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	4 cut(s)	90, 426, 441, 767
SatI	GCNGC	1 cut(s)	675
Sau3AI	GATC	2 cut(s)	679, 774
Sau96I	GGNCC	5 cut(s)	117, 184, 198, 436, 505
ScaI	AGTACT	2 cut(s)	42, 589
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	3 cut(s)	115, 203, 434
SfaNI	GCATC	2 cut(s)	196, 913
SfcI	CTRYAG	2 cut(s)	613, 675
SinI	GGWCC	2 cut(s)	436, 505
SmiMI	CAYNNNNRTG	1 cut(s)	601
Sse9I	AATT	5 cut(s)	405, 525, 711, 836, 915
StyD4I	CCNGG	3 cut(s)	113, 201, 432
TaaI	ACNGT	5 cut(s)	221, 272, 301, 353, 610
TaiI	ACGT	2 cut(s)	690, 721
TaqI	TCGA	2 cut(s)	475, 777
TaqII	GACCGA	1 cut(s)	493
TasI	AATT	5 cut(s)	405, 525, 711, 836, 915
TatI	WGTACW	3 cut(s)	40, 587, 892
TfiI	GAWTC	1 cut(s)	857
Tru1I	TTAA	4 cut(s)	90, 426, 441, 767
Tru9I	TTAA	4 cut(s)	90, 426, 441, 767
TscAI	CASTG	2 cut(s)	55, 358
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	674
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	5 cut(s)	384, 459, 528, 762, 849
TspRI	CASTG	2 cut(s)	55, 358
VpaK11BI	GGWCC	2 cut(s)	436, 505
XapI	RAATTY	3 cut(s)	405, 836, 915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmiI	GTMKAC	2 cut(s)	78, 822
ZrmI	AGTACT	2 cut(s)	42, 589
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.