Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001058.1

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Forward (+)

29359 .. 36930

Gene Structure 7572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001058.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

atgcacacaatcataaaatggattaaggcttaccttcagcaatcactggcatggattccatcttatgcagctgcaaacacaaacactgaatatagtcttctgttacttaccaacttgcttctcaatagacagaacaatatgcaaaatgtcggtagtaatcagggaccaattcatctagcaagtttggtgaattctgcattgcatgcggaattgctagctgtcaagaatggtttggaatttttgcaggccttgaatgttaccaaagctgtgcttgaaagtgattgtctacatgccgttcaacccatccactccttaactgaggatctatccgagttcgcagctttgatcttcgacattaaaggtctactgcaggctttaggggaggttacagtctgttttgctcctcgtcaggccaacgtggtggctcattgtctagctatagtcgcaagtatagtactttccagtgaaactccaaaaccaaatggctcagtatacccaaaccttaaaccctcccaaaaccctaaaccccggccctctttctcctccttcaaaaccacaaaacccaaatccaaaagcttcccaacactctctgtctcggcccaaaatcaacggcccctggatgccctgctcaacggttctcgcaaacaagaggtgcttggcgctattaggagttccttgtcaaactgtctttctgaaatcaatctccacctcacagttggtggcctcaaatccaaaagcagaggcaaggttagggatgtttatgacagtggtgattatctacttatggtcaccacagacaggcagagttcatttgatagaattcttgcttccattccctttaaaggccaggtccttaatgaaacaagtttatggtggtttgacaaaactcgacatataacatcaaatgcagttgtatcggtcccagatgaaaatgtaacaattgcaaagaaatgttctgtttttccggtggaggttgtgggcttggtaaagagccaaaagcttcctgctaatatactcacaccaacaactaaggctgcagatcatgacgttcctgttactccagatgagataattgaacgtggactgatgagtcaacccgattatgatgaacgtgtggctttggagcatgggttgatattggtagacacaaagtatgaatttggaaagcgacacgatgattccatgcatttgattgatgagatatattttcttgtacaagacaatcacaaaatcaaaattcaagatgccatcgacagaggtaaagaccttgttttgattgatattctatttttgtgtacaaataatagtgacataatccgagcttcttccattcaggagccaatacatgatcgaatatctcgcaatgtggcacaagcactgtcatatctgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

464

Amino Acids

51.33

Weight (kDa)

7.23

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1089
AccI	GTMKAC	4 cut(s)	286, 364, 492, 1143
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	5 cut(s)	190, 236, 819, 1157, 1236
AcuI	CTGAAG	1 cut(s)	20
AfaI	GTAC	3 cut(s)	456, 1215, 1297
AfiI	CCNNNNNNNGG	2 cut(s)	798, 842
AflIII	ACRYGT	1 cut(s)	1111
AgsI	TTSAA	6 cut(s)	253, 275, 299, 550, 1076, 1241
AjnI	CCWGG	2 cut(s)	615, 846
AluBI	AGCT	8 cut(s)	71, 218, 266, 341, 437, 576, 1000, 1322
AluI	AGCT	8 cut(s)	71, 218, 266, 341, 437, 576, 1000, 1322
Alw26I	GTCTC	1 cut(s)	598
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	7 cut(s)	246, 411, 530, 597, 611, 721, 844
ApeKI	GCWGC	4 cut(s)	68, 71, 338, 1034
ApoI	RAATTY	5 cut(s)	190, 236, 819, 1157, 1236
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	6 cut(s)	164, 531, 598, 612, 850, 919
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	3 cut(s)	199, 781, 782
AsuNHI	GCTAGC	1 cut(s)	214
AvaII	GGWCC	3 cut(s)	164, 850, 919
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	4 cut(s)	58, 80, 350, 1021
BccI	CCATC	3 cut(s)	67, 311, 1256
BceAI	ACGGC	2 cut(s)	278, 626
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciT130I	CCWGG	2 cut(s)	617, 848
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	3 cut(s)	176, 215, 434
BfmI	CTRYAG	3 cut(s)	368, 438, 1035
BfoI	RGCGCY	1 cut(s)	663
BisI	GCNGC	4 cut(s)	69, 72, 339, 1035
BlsI	GCNGC	4 cut(s)	70, 73, 340, 1036
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	529, 617, 848
Bme18I	GGWCC	3 cut(s)	164, 850, 919
BmgT120I	GGNCC	6 cut(s)	164, 531, 598, 612, 850, 919
BmiI	GGNNCC	4 cut(s)	165, 614, 921, 1338
BmrFI	CCNGG	3 cut(s)	529, 617, 848
BmsI	GCATC	2 cut(s)	610, 1234
BmtI	GCTAGC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	1044
BpuMI	CCSGG	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	527, 615
BsaWI	WCCGGW	1 cut(s)	964
BsaXI	ACNNNNNCTCC	2 cut(s)	1115, 1145
Bsc4I	CCNNNNNNNGG	2 cut(s)	798, 842
Bse1I	ACTGG	2 cut(s)	51, 462
Bse3DI	GCAATG	2 cut(s)	197, 1369
BseBI	CCWGG	2 cut(s)	617, 848
BseDI	CCNNGG	2 cut(s)	527, 615
BseGI	GGATG	3 cut(s)	303, 625, 760
BseLI	CCNNNNNNNGG	2 cut(s)	798, 842
BseMI	GCAATG	2 cut(s)	197, 1369
BseMII	CTCAG	2 cut(s)	309, 501
BseNI	ACTGG	2 cut(s)	51, 462
BseRI	GAGGAG	2 cut(s)	393, 532
BseXI	GCAGC	4 cut(s)	58, 80, 350, 1021
BshFI	GGCC	7 cut(s)	248, 413, 532, 599, 613, 723, 846
BsiSI	CCGG	2 cut(s)	529, 965
BslFI	GGGAC	2 cut(s)	177, 905
BslI	CCNNNNNNNGG	2 cut(s)	798, 842
BsmAI	GTCTC	1 cut(s)	598
BsmFI	GGGAC	2 cut(s)	177, 905
BsnI	GGCC	7 cut(s)	248, 413, 532, 599, 613, 723, 846
Bsp1407I	TGTACA	2 cut(s)	1213, 1295
Bsp143I	GATC	4 cut(s)	322, 345, 1039, 1348
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	7 cut(s)	248, 413, 532, 599, 613, 723, 846
BspCNI	CTCAG	2 cut(s)	310, 500
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	4 cut(s)	165, 614, 921, 1338
BspMAI	CTGCAG	2 cut(s)	372, 1039
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	330
BsrDI	GCAATG	2 cut(s)	197, 1369
BsrGI	TGTACA	2 cut(s)	1213, 1295
BsrI	ACTGG	2 cut(s)	51, 462
BssECI	CCNNGG	2 cut(s)	527, 615
BssMI	GATC	4 cut(s)	322, 345, 1039, 1348
BssNAI	GTATAC	1 cut(s)	493
Bst1107I	GTATAC	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	617, 848
Bst4CI	ACNGT	6 cut(s)	391, 635, 686, 715, 767, 1380
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstAUI	TGTACA	2 cut(s)	1213, 1295
BstC8I	GCNNGC	4 cut(s)	204, 216, 246, 372
BstDEI	CTNAG	3 cut(s)	318, 487, 1029
BstEII	GGTNACC	1 cut(s)	787
BstF5I	GGATG	3 cut(s)	303, 625, 760
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	4 cut(s)	325, 348, 1042, 1351
BstMAI	GTCTC	1 cut(s)	598
BstMBI	GATC	4 cut(s)	322, 345, 1039, 1348
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 443
BstNI	CCWGG	2 cut(s)	617, 848
BstNSI	RCATGY	2 cut(s)	206, 293
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	3 cut(s)	527, 615, 846
BstSFI	CTRYAG	3 cut(s)	368, 438, 1035
BstV1I	GCAGC	4 cut(s)	58, 80, 350, 1021
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	322
BstZ17I	GTATAC	1 cut(s)	493
BsuRI	GGCC	7 cut(s)	248, 413, 532, 599, 613, 723, 846
BtsCI	GGATG	3 cut(s)	303, 625, 760
BtsIMutI	CAGTG	5 cut(s)	44, 84, 469, 772, 1376
Cac8I	GCNNGC	4 cut(s)	204, 216, 246, 372
CciI	TCATGA	1 cut(s)	1042
CfoI	GCGC	1 cut(s)	662
Cfr13I	GGNCC	6 cut(s)	164, 531, 598, 612, 850, 919
Csp6I	GTAC	3 cut(s)	455, 1214, 1296
CviAII	CATG	7 cut(s)	51, 203, 290, 1043, 1127, 1183, 1346
CviQI	GTAC	3 cut(s)	455, 1214, 1296
DdeI	CTNAG	3 cut(s)	318, 487, 1029
DpnI	GATC	4 cut(s)	324, 347, 1041, 1350
DpnII	GATC	4 cut(s)	322, 345, 1039, 1348
DraI	TTTAAA	1 cut(s)	841
DrdI	GACNNNNNNGTC	1 cut(s)	1089
DseDI	GACNNNNNNGTC	1 cut(s)	1089
Eco147I	AGGCCT	1 cut(s)	248
Eco47I	GGWCC	3 cut(s)	164, 850, 919
Eco57I	CTGAAG	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	850
EcoO65I	GGTNACC	1 cut(s)	787
EcoRI	GAATTC	2 cut(s)	190, 819
EcoRII	CCWGG	2 cut(s)	615, 846
EcoT22I	ATGCAT	1 cut(s)	1188
FaeI	CATG	7 cut(s)	54, 206, 293, 1046, 1130, 1186, 1349
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 639, 671
FaqI	GGGAC	2 cut(s)	177, 905
FatI	CATG	7 cut(s)	50, 202, 289, 1042, 1126, 1182, 1345
FblI	GTMKAC	4 cut(s)	286, 364, 492, 1143
Fnu4HI	GCNGC	4 cut(s)	69, 72, 339, 1035
FokI	GGATG	3 cut(s)	290, 632, 767
Fsp4HI	GCNGC	4 cut(s)	69, 72, 339, 1035
FspBI	CTAG	3 cut(s)	176, 215, 434
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	4 cut(s)	69, 72, 339, 1035
GsuI	CTGGAG	1 cut(s)	1044
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	7 cut(s)	248, 413, 532, 599, 613, 723, 846
HapII	CCGG	2 cut(s)	529, 965
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	7 cut(s)	54, 206, 293, 1046, 1130, 1186, 1349
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HincII	GTYRAC	1 cut(s)	1094
HindII	GTYRAC	1 cut(s)	1094
HindIII	AAGCTT	2 cut(s)	574, 998
HinfI	GANTC	3 cut(s)	55, 1090, 1178
HpaII	CCGG	2 cut(s)	529, 965
HphI	GGTGA	3 cut(s)	199, 781, 782
Hpy166II	GTNNAC	7 cut(s)	287, 365, 493, 1082, 1094, 1144, 1296
Hpy188I	TCNGA	4 cut(s)	331, 694, 1319, 1389
Hpy188III	TCNNGA	5 cut(s)	223, 1043, 1061, 1241, 1334
Hpy8I	GTNNAC	7 cut(s)	287, 365, 493, 1082, 1094, 1144, 1296
HpyAV	CCTTC	2 cut(s)	44, 556
HpyCH4III	ACNGT	6 cut(s)	391, 635, 686, 715, 767, 1380
HpyCH4IV	ACGT	4 cut(s)	417, 1047, 1078, 1111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 443
HpyF3I	CTNAG	3 cut(s)	318, 487, 1029
HpySE526I	ACGT	4 cut(s)	417, 1047, 1078, 1111
Hsp92II	CATG	7 cut(s)	54, 206, 293, 1046, 1130, 1186, 1349
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	4 cut(s)	322, 345, 1039, 1348
LmnI	GCTCC	3 cut(s)	406, 1123, 1336
Lsp1109I	GCAGC	4 cut(s)	58, 80, 350, 1021
LweI	GCATC	2 cut(s)	610, 1234
MaeI	CTAG	3 cut(s)	176, 215, 434
MaeII	ACGT	4 cut(s)	417, 1047, 1078, 1111
MaeIII	GTNAC	7 cut(s)	102, 256, 385, 787, 934, 1054, 1307
MalI	GATC	4 cut(s)	324, 347, 1041, 1350
MboI	GATC	4 cut(s)	322, 345, 1039, 1348
MboII	GAAGA	3 cut(s)	89, 340, 1317
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	9 cut(s)	168, 190, 209, 236, 819, 939, 1071, 1157, 1236
MlyI	GAGTC	1 cut(s)	1099
Mph1103I	ATGCAT	1 cut(s)	1188
MseI	TTAA	6 cut(s)	24, 314, 357, 504, 840, 855
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	529, 965
MspR9I	CCNGG	3 cut(s)	529, 617, 848
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	2 cut(s)	617, 848
MwoI	GCNNNNNNNGC	2 cut(s)	203, 443
NciI	CCSGG	1 cut(s)	529
NdeII	GATC	4 cut(s)	322, 345, 1039, 1348
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	7 cut(s)	54, 206, 293, 1046, 1130, 1186, 1349
NlaIV	GGNNCC	4 cut(s)	165, 614, 921, 1338
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	2 cut(s)	787, 1307
NsiI	ATGCAT	1 cut(s)	1188
NspI	RCATGY	2 cut(s)	206, 293
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	1042
PceI	AGGCCT	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	55, 1178
PkrI	GCNGC	4 cut(s)	70, 73, 340, 1036
PleI	GAGTC	1 cut(s)	1098
PpsI	GAGTC	1 cut(s)	1098
PpuMI	RGGWCCY	1 cut(s)	850
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	2 cut(s)	615, 846
PspEI	GGTNACC	1 cut(s)	787
PspGI	CCWGG	2 cut(s)	615, 846
PspN4I	GGNNCC	4 cut(s)	165, 614, 921, 1338
PspPI	GGNCC	6 cut(s)	164, 531, 598, 612, 850, 919
PspPPI	RGGWCCY	1 cut(s)	850
PstI	CTGCAG	2 cut(s)	372, 1039
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	3 cut(s)	456, 1215, 1297
RsaNI	GTAC	3 cut(s)	455, 1214, 1296
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	6 cut(s)	24, 314, 357, 504, 840, 855
SatI	GCNGC	4 cut(s)	69, 72, 339, 1035
Sau3AI	GATC	4 cut(s)	322, 345, 1039, 1348
Sau96I	GGNCC	6 cut(s)	164, 531, 598, 612, 850, 919
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	1099
ScrFI	CCNGG	3 cut(s)	529, 617, 848
SfaNI	GCATC	2 cut(s)	610, 1234
SfcI	CTRYAG	3 cut(s)	368, 438, 1035
SinI	GGWCC	3 cut(s)	164, 850, 919
SmiMI	CAYNNNNRTG	1 cut(s)	49
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	9 cut(s)	168, 190, 209, 236, 819, 939, 1071, 1157, 1236
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	3 cut(s)	176, 215, 434
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	527, 615, 846
TaaI	ACNGT	6 cut(s)	391, 635, 686, 715, 767, 1380
TaiI	ACGT	4 cut(s)	420, 1050, 1081, 1114
TaqI	TCGA	4 cut(s)	351, 889, 1251, 1351
TaqII	GACCGA	1 cut(s)	907
TasI	AATT	9 cut(s)	168, 190, 209, 236, 819, 939, 1071, 1157, 1236
TatI	WGTACW	3 cut(s)	454, 1213, 1295
TfiI	GAWTC	2 cut(s)	55, 1178
Tru1I	TTAA	6 cut(s)	24, 314, 357, 504, 840, 855
Tru9I	TTAA	6 cut(s)	24, 314, 357, 504, 840, 855
TscAI	CASTG	5 cut(s)	51, 91, 469, 772, 1383
TseFI	GTSAC	2 cut(s)	787, 1307
TseI	GCWGC	4 cut(s)	68, 71, 338, 1034
Tsp45I	GTSAC	2 cut(s)	787, 1307
TspDTI	ATGAA	6 cut(s)	161, 798, 873, 942, 1122, 1170
TspRI	CASTG	5 cut(s)	51, 91, 469, 772, 1383
VpaK11BI	GGWCC	3 cut(s)	164, 850, 919
XapI	RAATTY	5 cut(s)	190, 236, 819, 1157, 1236
XceI	RCATGY	2 cut(s)	206, 293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmiI	GTMKAC	4 cut(s)	286, 364, 492, 1143
XspI	CTAG	3 cut(s)	176, 215, 434
ZrmI	AGTACT	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.