Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

29544993 .. 29549462

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1136500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCCCAGTATACACCAACCTTAAACCCTCCCAAAACCCTAATCCCCAAGCTCTCAAATCCTAATCCCTCGTTCTCTTCATTCTCTACCTTCACAATCCCAAAACCCAAATCCATAAACTTCCCAAAATTCTCCATTTCGGTCACTGCGGCCCAAAACCAGCAGCACCGCCAACAACCGCCATCCTTGGAAGCTCTGATCAACAGTGATCGCAAAGAAGAGGTGCTTGGAGTTATCAAGAGTTCGTCGTCGCACTCCCTCTCCGAAACCAACCTTCACCTGACAGTTCCTGGCCTCAAATCCAAAACCAGAGGCAAGGTTAGAGATGTTTACGACAGTGGGGATTATCTAGTTATGGTTACGACGGATAGGCAGAGTGCATTTGACAGAATTCTTGCGTCTATTCCCTTCAAAGGCCAGGTCCTTAATGAGACAAGTTTATGGTGGTTTGACAAAACTCGACATATAACTTCAAACGCAGTTGTTTTGGCTCCAGATGAAAATGTAACAATTGCAAAGAAATGCTCTGTTTTTCCCGTTGAGTTTGTGGTCAGAGGTTTTGTGACGGGAAGCACTGATACATCATTATGGACGGTCTACAAAAATGGTGTTCGAAATTACTGTGGCAATGTACTCCCAGATGGCTTGGTAAAAAGCCAAAAGCTTCCTGCAAATATACTCACACCAACAACTAAGGCTGCAGATCATGATGTTCCTGTTACCCCAGACGAGATAATTGAACGCGGACTAATGACTCAAGCCGAGTATGATGAAGTAAGCAGGAAAGCACTGAGCTTGTTTGAGTATGGACAGCGTGTGGCTTTGGAACATGGCTTGATATTGGCAGACACAAAATATGAATTTGGAAAGGGCCAGGATGGTTCCATTCTTTTGATTGATGAGGTGCATACACCTGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAGCGATTTCAGAATGGTCTTGAACCCGAAAATGTTGATAAAGAGTTCTTGAGGTTGTGGTTCAAAGATCACTGCGATCCTTACGAAGATGAGGTCCTCCCTGATGCTCCTGAGGAACTCGTTTGTGAACTAGCTTGGCGATACATTTTCCTGTACGAGACAATAACAAAATCAAAATTCAAGCTGCCCTCCACGGAGGAACCAATACATGATCGGATATCACGCAATGTTGCACAGGCGCTGTCATCTCTGACTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

404

Amino Acids

45.5

Weight (kDa)

5.86

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	103 - 348	3e-68	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	11, 597
AccII	CGCG	1 cut(s)	744
AciI	CCGC	4 cut(s)	149, 169, 179, 744
AclWI	GGATC	1 cut(s)	1022
AcsI	RAATTY	4 cut(s)	128, 390, 860, 1127
AfaI	GTAC	2 cut(s)	633, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	7 cut(s)	412, 474, 740, 921, 974, 1015, 1132
AjnI	CCWGG	3 cut(s)	289, 417, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	6 cut(s)	52, 194, 664, 795, 1085, 1135
AluI	AGCT	6 cut(s)	52, 194, 664, 795, 1085, 1135
Alw26I	GTCTC	2 cut(s)	425, 1103
AlwI	GGATC	1 cut(s)	1022
AlwNI	CAGNNNCTG	2 cut(s)	290, 1192
AoxI	GGCC	5 cut(s)	3, 150, 292, 415, 871
ApeKI	GCWGC	3 cut(s)	163, 698, 1135
ApoI	RAATTY	4 cut(s)	128, 390, 860, 1127
ArsI	GACNNNNNNTTYG	4 cut(s)	405, 437, 1029, 1061
AspLEI	GCGC	1 cut(s)	1192
AspS9I	GGNCC	5 cut(s)	4, 151, 421, 871, 1045
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	613
AvaII	GGWCC	2 cut(s)	421, 1045
AxyI	CCTNAGG	1 cut(s)	1062
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BbvI	GCAGC	3 cut(s)	175, 685, 1122
BccI	CCATC	3 cut(s)	190, 635, 872
BciT130I	CCWGG	3 cut(s)	291, 419, 875
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	425, 1103
BfaI	CTAG	2 cut(s)	350, 1082
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	1193
BisI	GCNGC	4 cut(s)	150, 164, 699, 1136
BlsI	GCNGC	4 cut(s)	151, 165, 700, 1137
Bme1390I	CCNGG	3 cut(s)	291, 419, 875
Bme18I	GGWCC	2 cut(s)	421, 1045
BmgT120I	GGNCC	5 cut(s)	4, 151, 421, 871, 1045
BmiI	GGNNCC	3 cut(s)	492, 883, 1152
BmrFI	CCNGG	3 cut(s)	291, 419, 875
BmsI	GCATC	1 cut(s)	1045
BpmI	CTGGAG	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	613
BpuEI	CTTGAG	2 cut(s)	741, 1021
BsaJI	CCNNGG	2 cut(s)	186, 1143
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	7
Bse21I	CCTNAGG	1 cut(s)	1062
Bse3DI	GCAATG	2 cut(s)	634, 1183
BseBI	CCWGG	3 cut(s)	291, 419, 875
BseDI	CCNNGG	2 cut(s)	186, 1143
BseGI	GGATG	2 cut(s)	182, 883
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	2 cut(s)	634, 1183
BseMII	CTCAG	2 cut(s)	782, 1053
BseNI	ACTGG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	965
BseXI	GCAGC	3 cut(s)	175, 685, 1122
Bsh1236I	CGCG	1 cut(s)	744
BshFI	GGCC	5 cut(s)	5, 152, 294, 417, 873
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	425, 1103
BsnI	GGCC	5 cut(s)	5, 152, 294, 417, 873
Bsp119I	TTCGAA	1 cut(s)	613
Bsp143I	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
BspACI	CCGC	4 cut(s)	149, 169, 179, 744
BspANI	GGCC	5 cut(s)	5, 152, 294, 417, 873
BspCNI	CTCAG	2 cut(s)	783, 1054
BspFNI	CGCG	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	492, 883, 1152
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	1 cut(s)	1022
BspT104I	TTCGAA	1 cut(s)	613
BsrDI	GCAATG	2 cut(s)	634, 1183
BsrI	ACTGG	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	186, 1143
BssMI	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
BssNAI	GTATAC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	12
Bst2UI	CCWGG	3 cut(s)	291, 419, 875
Bst4CI	ACNGT	5 cut(s)	206, 286, 338, 595, 623
Bst6I	CTCTTC	2 cut(s)	82, 213
BstBI	TTCGAA	1 cut(s)	613
BstDEI	CTNAG	3 cut(s)	693, 791, 1062
BstDSI	CCRYGG	1 cut(s)	1143
BstF5I	GGATG	2 cut(s)	182, 883
BstFNI	CGCG	1 cut(s)	744
BstH2I	RGCGCY	1 cut(s)	1193
BstHHI	GCGC	1 cut(s)	1192
BstKTI	GATC	6 cut(s)	201, 211, 706, 1021, 1030, 1165
BstMAI	GTCTC	2 cut(s)	425, 1103
BstMBI	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
BstNI	CCWGG	3 cut(s)	291, 419, 875
BstSCI	CCNGG	3 cut(s)	289, 417, 873
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	3 cut(s)	175, 685, 1122
BstZ17I	GTATAC	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuRI	GGCC	5 cut(s)	5, 152, 294, 417, 873
BtgI	CCRYGG	1 cut(s)	1143
BtsCI	GGATG	2 cut(s)	182, 883
BtsI	GCAGTG	2 cut(s)	144, 1021
BtsIMutI	CAGTG	6 cut(s)	144, 211, 343, 573, 788, 1021
CaiI	CAGNNNCTG	2 cut(s)	290, 1192
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	1192
Cfr13I	GGNCC	5 cut(s)	4, 151, 421, 871, 1045
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	632, 1105
CviAII	CATG	3 cut(s)	707, 830, 1160
CviQI	GTAC	2 cut(s)	632, 1105
DdeI	CTNAG	3 cut(s)	693, 791, 1062
DpnI	GATC	6 cut(s)	200, 210, 705, 1020, 1029, 1164
DpnII	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
Eam1104I	CTCTTC	2 cut(s)	82, 213
EarI	CTCTTC	2 cut(s)	82, 213
Eco130I	CCWWGG	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	1170
Eco47I	GGWCC	2 cut(s)	421, 1045
Eco81I	CCTNAGG	1 cut(s)	1062
EcoO109I	RGGNCCY	2 cut(s)	421, 1045
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	3 cut(s)	289, 417, 873
EcoRV	GATATC	1 cut(s)	1170
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	710, 833, 1163
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	706, 829, 1159
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	2 cut(s)	11, 597
Fnu4HI	GCNGC	4 cut(s)	150, 164, 699, 1136
FokI	GGATG	2 cut(s)	169, 890
Fsp4HI	GCNGC	4 cut(s)	150, 164, 699, 1136
FspBI	CTAG	2 cut(s)	350, 1082
GlaI	GCGC	1 cut(s)	1191
GluI	GCNGC	4 cut(s)	150, 164, 699, 1136
GsuI	CTGGAG	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	1193
HaeIII	GGCC	5 cut(s)	5, 152, 294, 417, 873
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	1192
Hin1II	CATG	3 cut(s)	710, 833, 1163
Hin6I	GCGC	1 cut(s)	1190
HinP1I	GCGC	1 cut(s)	1190
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	3 cut(s)	754, 917, 1204
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	4 cut(s)	12, 331, 598, 1079
Hpy188I	TCNGA	6 cut(s)	198, 265, 554, 963, 1167, 1203
Hpy188III	TCNNGA	6 cut(s)	238, 494, 707, 971, 1000, 1061
Hpy8I	GTNNAC	4 cut(s)	12, 331, 598, 1079
Hpy99I	CGWCG	3 cut(s)	250, 253, 367
HpyAV	CCTTC	3 cut(s)	100, 284, 418
HpyCH4III	ACNGT	5 cut(s)	206, 286, 338, 595, 623
HpyCH4V	TGCA	7 cut(s)	380, 515, 671, 701, 907, 938, 1184
HpyF3I	CTNAG	3 cut(s)	693, 791, 1062
Hsp92II	CATG	3 cut(s)	710, 833, 1163
HspAI	GCGC	1 cut(s)	1190
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
LmnI	GCTCC	3 cut(s)	496, 952, 1063
Lsp1109I	GCAGC	3 cut(s)	175, 685, 1122
LweI	GCATC	1 cut(s)	1045
MaeI	CTAG	2 cut(s)	350, 1082
MaeIII	GTNAC	5 cut(s)	142, 358, 505, 562, 718
MalI	GATC	6 cut(s)	200, 210, 705, 1020, 1029, 1164
MboI	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
MboII	GAAGA	3 cut(s)	69, 230, 1049
MfeI	CAATTG	1 cut(s)	510
MluCI	AATT	7 cut(s)	128, 390, 510, 616, 735, 860, 1127
MlyI	GAGTC	2 cut(s)	748, 1198
MseI	TTAA	2 cut(s)	23, 426
MslI	CAYNNNNRTG	2 cut(s)	586, 945
MspR9I	CCNGG	3 cut(s)	291, 419, 875
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	3 cut(s)	291, 419, 875
MvnI	CGCG	1 cut(s)	744
NdeII	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
NlaIII	CATG	3 cut(s)	710, 833, 1163
NlaIV	GGNNCC	3 cut(s)	492, 883, 1152
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	2 cut(s)	142, 562
NspV	TTCGAA	1 cut(s)	613
PagI	TCATGA	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	917
PkrI	GCNGC	4 cut(s)	151, 165, 700, 1137
PleI	GAGTC	2 cut(s)	748, 1198
PpsI	GAGTC	2 cut(s)	748, 1198
PpuMI	RGGWCCY	2 cut(s)	421, 1045
Psp5II	RGGWCCY	2 cut(s)	421, 1045
Psp6I	CCWGG	3 cut(s)	289, 417, 873
PspGI	CCWGG	3 cut(s)	289, 417, 873
PspN4I	GGNNCC	3 cut(s)	492, 883, 1152
PspPI	GGNCC	5 cut(s)	4, 151, 421, 871, 1045
PspPPI	RGGWCCY	2 cut(s)	421, 1045
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	2 cut(s)	290, 1192
RsaI	GTAC	2 cut(s)	633, 1106
RsaNI	GTAC	2 cut(s)	632, 1105
RseI	CAYNNNNRTG	2 cut(s)	586, 945
SaqAI	TTAA	2 cut(s)	23, 426
SatI	GCNGC	4 cut(s)	150, 164, 699, 1136
Sau3AI	GATC	6 cut(s)	198, 208, 703, 1018, 1027, 1162
Sau96I	GGNCC	5 cut(s)	4, 151, 421, 871, 1045
SchI	GAGTC	2 cut(s)	748, 1198
ScrFI	CCNGG	3 cut(s)	291, 419, 875
SfaNI	GCATC	1 cut(s)	1045
SfcI	CTRYAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	613
SinI	GGWCC	2 cut(s)	421, 1045
SmiMI	CAYNNNNRTG	2 cut(s)	586, 945
SmlI	CTYRAG	2 cut(s)	756, 1000
SmoI	CTYRAG	2 cut(s)	756, 1000
Sse9I	AATT	7 cut(s)	128, 390, 510, 616, 735, 860, 1127
SsiI	CCGC	4 cut(s)	149, 169, 179, 744
SspMI	CTAG	2 cut(s)	350, 1082
StyD4I	CCNGG	3 cut(s)	289, 417, 873
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	5 cut(s)	206, 286, 338, 595, 623
TaqI	TCGA	3 cut(s)	460, 613, 1207
TaqII	GACCGA	1 cut(s)	130
TasI	AATT	7 cut(s)	128, 390, 510, 616, 735, 860, 1127
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	917
Tru1I	TTAA	2 cut(s)	23, 426
Tru9I	TTAA	2 cut(s)	23, 426
TscAI	CASTG	6 cut(s)	151, 211, 343, 580, 795, 1028
TseFI	GTSAC	2 cut(s)	142, 562
TseI	GCWGC	3 cut(s)	163, 698, 1135
Tsp45I	GTSAC	2 cut(s)	142, 562
TspDTI	ATGAA	4 cut(s)	69, 513, 786, 873
TspGWI	ACGGA	2 cut(s)	380, 1160
TspRI	CASTG	6 cut(s)	151, 211, 343, 580, 795, 1028
VpaK11BI	GGWCC	2 cut(s)	421, 1045
XapI	RAATTY	4 cut(s)	128, 390, 860, 1127
XmiI	GTMKAC	2 cut(s)	11, 597
XspI	CTAG	2 cut(s)	350, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.