Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

37149948 .. 37152969

Gene Structure 3022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG333800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTCAGTATACCCAAACCTTAAACCCTCCCAAAACCCTCATCCCCAAGCTCCCAAATCCCAACCCTGGCCCTCTTTCTCCTCCTTCAAAACCACAAAACCCAAATCCAAAAGCTTCCCAACATTCTCTGAGTTCCTTGTCAAACTGTCTTTCTGAAATCAATCTCCACCTCACAGTTGGTGGCCTCAAATCCAAAAGCAGAGGCAAGGTTAGGGATGTTTATGACAGTGGTGATTATCTAGTTATGGTCACCACAGACAGGCAGAGTTCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTAATGAAACAAGTTTATGGTGGTTTGACAAAACTCGACATATAACATCAAATGCAGTTGTATCGGTCCCAGATGAAAATGTAACAATTGCAAAGAAATGTTCTGTTTTTCCGGTGGAGGTTGTGGGCTTGGTAAAGAGCCAAAATCTTCCTGCTAATATACTCACACCAACAACTAAGGCTGCAGATCATGACGTTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGACAACCGGATTATGATGAAGTAAGTAGGAAAGCATTAAGCTTGTTCGAGTATAGACATCGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGCGACATGATGATTCCATACATTTGATTGATGAGGTGCATACAACAATAACCAAAGCTTTTTGTCAATGCTTCTTTCAACAAGATCATGCCAAACAACTAAGTAGTATTGTTGAGATTTCATCCACAGATGCAACAATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

270

Amino Acids

30.07

Weight (kDa)

6.79

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	67 - 237	3.8e-40	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	11, 645
AcsI	RAATTY	2 cut(s)	282, 659
AfiI	CCNNNNNNNGG	3 cut(s)	68, 261, 305
AgsI	TTSAA	3 cut(s)	90, 539, 746
AjnI	CCWGG	2 cut(s)	67, 309
AluBI	AGCT	4 cut(s)	52, 116, 594, 725
AluI	AGCT	4 cut(s)	52, 116, 594, 725
Alw26I	GTCTC	1 cut(s)	547
AoxI	GGCC	3 cut(s)	70, 184, 307
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	2 cut(s)	282, 659
AspS9I	GGNCC	3 cut(s)	71, 313, 382
AsuHPI	GGTGA	2 cut(s)	244, 245
AvaII	GGWCC	2 cut(s)	313, 382
BbvI	GCAGC	1 cut(s)	484
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciT130I	CCWGG	2 cut(s)	69, 311
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	2 cut(s)	69, 311
Bme18I	GGWCC	2 cut(s)	313, 382
BmgT120I	GGNCC	3 cut(s)	71, 313, 382
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	69, 311
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	2 cut(s)	427, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 261, 305
BseBI	CCWGG	2 cut(s)	69, 311
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	3 cut(s)	42, 223, 788
BseLI	CCNNNNNNNGG	3 cut(s)	68, 261, 305
BseMII	CTCAG	2 cut(s)	20, 122
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	3 cut(s)	72, 186, 309
BsiSI	CCGG	2 cut(s)	428, 560
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	68, 261, 305
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	72, 186, 309
Bsp143I	GATC	2 cut(s)	502, 751
BspANI	GGCC	3 cut(s)	72, 186, 309
BspCNI	CTCAG	2 cut(s)	19, 123
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	502, 751
BssNAI	GTATAC	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	69, 311
Bst4CI	ACNGT	3 cut(s)	149, 178, 230
BstDEI	CTNAG	4 cut(s)	6, 131, 492, 767
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	42, 223, 788
BstKTI	GATC	2 cut(s)	505, 754
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	2 cut(s)	502, 751
BstNI	CCWGG	2 cut(s)	69, 311
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	67, 309
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	484
BstZ17I	GTATAC	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	72, 186, 309
BtsCI	GGATG	3 cut(s)	42, 223, 788
BtsIMutI	CAGTG	1 cut(s)	235
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	3 cut(s)	71, 313, 382
CviAII	CATG	4 cut(s)	506, 629, 674, 755
DdeI	CTNAG	4 cut(s)	6, 131, 492, 767
DpnI	GATC	2 cut(s)	504, 753
DpnII	GATC	2 cut(s)	502, 751
DraI	TTTAAA	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	313, 382
Eco91I	GGTNACC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	67, 309
FaeI	CATG	4 cut(s)	509, 632, 677, 758
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	4 cut(s)	505, 628, 673, 754
FblI	GTMKAC	2 cut(s)	11, 645
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	3 cut(s)	29, 230, 775
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	3 cut(s)	72, 186, 309
HapII	CCGG	2 cut(s)	428, 560
Hin1II	CATG	4 cut(s)	509, 632, 677, 758
HindIII	AAGCTT	3 cut(s)	114, 592, 723
HinfI	GANTC	1 cut(s)	680
HpaII	CCGG	2 cut(s)	428, 560
HphI	GGTGA	2 cut(s)	244, 245
Hpy166II	GTNNAC	3 cut(s)	12, 545, 646
Hpy188I	TCNGA	2 cut(s)	132, 157
Hpy188III	TCNNGA	2 cut(s)	506, 524
Hpy8I	GTNNAC	3 cut(s)	12, 545, 646
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	3 cut(s)	149, 178, 230
HpyCH4IV	ACGT	2 cut(s)	510, 541
HpyCH4V	TGCA	5 cut(s)	371, 407, 500, 706, 800
HpyF3I	CTNAG	4 cut(s)	6, 131, 492, 767
HpySE526I	ACGT	2 cut(s)	510, 541
Hsp92II	CATG	4 cut(s)	509, 632, 677, 758
Kzo9I	GATC	2 cut(s)	502, 751
LmnI	GCTCC	2 cut(s)	57, 625
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	2 cut(s)	510, 541
MaeIII	GTNAC	3 cut(s)	250, 397, 517
MalI	GATC	2 cut(s)	504, 753
MboI	GATC	2 cut(s)	502, 751
MboII	GAAGA	1 cut(s)	455
MfeI	CAATTG	1 cut(s)	402
MluCI	AATT	4 cut(s)	282, 402, 534, 659
MnlI	CCTC	9 cut(s)	39, 50, 84, 93, 182, 197, 197, 427, 694
MseI	TTAA	4 cut(s)	23, 303, 318, 590
MspI	CCGG	2 cut(s)	428, 560
MspR9I	CCNGG	2 cut(s)	69, 311
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	69, 311
NdeII	GATC	2 cut(s)	502, 751
NlaIII	CATG	4 cut(s)	509, 632, 677, 758
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	250
PagI	TCATGA	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	67, 309
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	67, 309
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	3 cut(s)	71, 313, 382
PspPPI	RGGWCCY	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	502
SaqAI	TTAA	4 cut(s)	23, 303, 318, 590
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	2 cut(s)	502, 751
Sau96I	GGNCC	3 cut(s)	71, 313, 382
ScrFI	CCNGG	2 cut(s)	69, 311
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	313, 382
Sse9I	AATT	4 cut(s)	282, 402, 534, 659
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	67, 309
TaaI	ACNGT	3 cut(s)	149, 178, 230
TaiI	ACGT	2 cut(s)	513, 544
TaqI	TCGA	2 cut(s)	352, 600
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	4 cut(s)	282, 402, 534, 659
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	4 cut(s)	23, 303, 318, 590
Tru9I	TTAA	4 cut(s)	23, 303, 318, 590
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	6 cut(s)	261, 336, 405, 585, 672, 777
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	313, 382
XapI	RAATTY	2 cut(s)	282, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	11, 645
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.