pycom08g16460

Phosphoribosylaminoimidazole-succinocarboxamide synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
16434566 .. 16439403
4838 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16460.10

Sequence Viewer

Length: 1290 bp
ATGCTCTGTAGTTATATAAAGGCGCCAACAGCTGAATCAGCAGCCACCGTGAGGCTCCAATTTCAACCGCCGCAAATGGCCCAGTATACACCAACCTTAAACCCTCCCAAAACCCTAATCCCCAAGCTCTCAAATCCTAATCCCTCGTTCTCTTCATTCTCTACCTTCACAATCCCAAAACCCAAATCCATAAACTTCCCAAAATTCTCCATTTCGGTCACGGCGGCCCAAAACCAGCGGCACCACCAGCAACCGCCATCCTTGGAAGCTCTGATCAACAGTGATCGCAAAGAAGAGGTGCTTGGAGTTATCAAGAGTTCGTCGTCGCACTGCCTCTCCGAAACCAACCTCCACCTGACAGTTCCTGGCCTCAAATCCAAAACCAGAGGCAAGGTTAGAGACGTTTACGACAGTGGGGATTATCTAGTTATGGTTACGACGGATAGGCAGAGTGCATTTGACAGAATTCTTGCGTCTATTCCCTTCAAAGGCCAGGTCCTTAATGAGACAAGTTTATGGTGGTTTGACAAAACTCGACATATAACTTCAAATGCAGTTGTTTCGGCTCCGGATGAAAATGTAACAATTGCAAAGAAATGCTCTGTTTTTCCCGTTGAGTTTTTTGTAGTCAGAGGTTTTGTGACGGGAAGCACTGATACATCATTATGGACGGTCTACAAAAATGGTGTTCGAAATTACTGTGGCAATGTACTCCCAGATGGCTTGGTAAAAAGCCAAAAGCTTCCTGCAAATATACTCACACCAACAACTAAGGCTGCAGATCATGATGTTCCTGTTACCCCAGACGAGATAATTGAACGTGGACTAATGACTCAAGCCGAGTATGATGAAGTAAGCAGGAAAGCACTGAGCTTGTTTGAGTATGGACAGTGTGTGGCTTTGGAACATGGCTTGATATTGGTAGACACAAAATATGAATTTGGAAAGGGCCAGGATGGTTCCATTCTTTTGATTGATGAGGTGCATACACCTGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAGCGATTTCAGAATGGTCTTGAACCCGAAAATGTTGATAAAGAGTTCTTGAGGTTGTGGTTCAAAGATCACTGCAATCCTTACAAAGATGAGGTCCTCCCTGATGCTCCTGAGGAACTCGTTTGTGAACTAGCTTGGCGATACATTTTCCTGTACGAGACAATAACAAAATCAAAATTCAAGCTGCCCTCCACGGAGGAACCAATACATGATCGGATATCACGCAATGTTGCACAGGCGCTGTCATCTCTGACTCGATAA

Protein Analysis

430

Amino Acids

48.35

Weight (kDa)

6.28

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 22, 240
AccI GTMKAC 3 cut(s) 86, 675, 924
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 5 cut(s) 68, 71, 224, 238, 254
AcsI RAATTY 4 cut(s) 203, 465, 938, 1205
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 711, 1184
AfiI CCNNNNNNNGG 2 cut(s) 51, 488
AgsI TTSAA 8 cut(s) 65, 487, 549, 818, 999, 1052, 1093, 1210
AjnI CCWGG 3 cut(s) 364, 492, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 7 cut(s) 32, 127, 269, 742, 873, 1163, 1213
AluI AGCT 7 cut(s) 32, 127, 269, 742, 873, 1163, 1213
Alw26I GTCTC 3 cut(s) 393, 500, 1181
AlwNI CAGNNNCTG 2 cut(s) 365, 1270
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 5 cut(s) 78, 225, 367, 490, 949
ApeKI GCWGC 3 cut(s) 41, 776, 1213
ApoI RAATTY 4 cut(s) 203, 465, 938, 1205
ArsI GACNNNNNNTTYG 4 cut(s) 480, 512, 1107, 1139
AspLEI GCGC 2 cut(s) 25, 1270
AspS9I GGNCC 5 cut(s) 79, 226, 496, 949, 1123
AsuII TTCGAA 1 cut(s) 691
AvaII GGWCC 2 cut(s) 496, 1123
AxyI CCTNAGG 1 cut(s) 1140
BanI GGYRCC 2 cut(s) 22, 240
BarI GAAGNNNNNNTAC 2 cut(s) 640, 672
BbvI GCAGC 3 cut(s) 53, 763, 1200
BccI CCATC 3 cut(s) 265, 713, 950
BceAI ACGGC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 543, 577
BciT130I CCWGG 3 cut(s) 366, 494, 953
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 3 cut(s) 393, 500, 1181
BfaI CTAG 2 cut(s) 425, 1160
BfmI CTRYAG 2 cut(s) 7, 777
BfoI RGCGCY 2 cut(s) 26, 1271
BisI GCNGC 6 cut(s) 42, 71, 225, 239, 777, 1214
BlsI GCNGC 6 cut(s) 43, 72, 226, 240, 778, 1215
Bme1390I CCNGG 3 cut(s) 366, 494, 953
Bme18I GGWCC 2 cut(s) 496, 1123
BmgT120I GGNCC 5 cut(s) 79, 226, 496, 949, 1123
BmiI GGNNCC 6 cut(s) 24, 56, 242, 567, 961, 1230
BmrFI CCNGG 3 cut(s) 366, 494, 953
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 1123
BmuI ACTGGG 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 691
BpuEI CTTGAG 2 cut(s) 819, 1099
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 261, 1221
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 488
Bse1I ACTGG 1 cut(s) 82
Bse21I CCTNAGG 1 cut(s) 1140
Bse3DI GCAATG 2 cut(s) 712, 1261
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 3 cut(s) 366, 494, 953
BseDI CCNNGG 2 cut(s) 261, 1221
BseGI GGATG 3 cut(s) 257, 577, 961
BseLI CCNNNNNNNGG 2 cut(s) 51, 488
BseMI GCAATG 2 cut(s) 712, 1261
BseMII CTCAG 2 cut(s) 860, 1131
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 1043
BseXI GCAGC 3 cut(s) 53, 763, 1200
BshFI GGCC 5 cut(s) 80, 227, 369, 492, 951
BshNI GGYRCC 2 cut(s) 22, 240
BsiSI CCGG 1 cut(s) 569
BslI CCNNNNNNNGG 2 cut(s) 51, 488
BsmAI GTCTC 3 cut(s) 393, 500, 1181
BsmBI CGTCTC 1 cut(s) 393
BsnI GGCC 5 cut(s) 80, 227, 369, 492, 951
Bsp119I TTCGAA 1 cut(s) 691
Bsp13I TCCGGA 1 cut(s) 568
Bsp143I GATC 5 cut(s) 273, 283, 781, 1096, 1240
BspACI CCGC 5 cut(s) 68, 71, 224, 238, 254
BspANI GGCC 5 cut(s) 80, 227, 369, 492, 951
BspCNI CTCAG 2 cut(s) 861, 1132
BspEI TCCGGA 1 cut(s) 568
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 6 cut(s) 24, 56, 242, 567, 961, 1230
BspMAI CTGCAG 1 cut(s) 781
BspT104I TTCGAA 1 cut(s) 691
BspT107I GGYRCC 2 cut(s) 22, 240
BsrDI GCAATG 2 cut(s) 712, 1261
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 261, 1221
BssMI GATC 5 cut(s) 273, 283, 781, 1096, 1240
BssNAI GTATAC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 261
Bst1107I GTATAC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 366, 494, 953
Bst4CI ACNGT 7 cut(s) 49, 281, 361, 413, 673, 701, 891
Bst6I CTCTTC 2 cut(s) 157, 288
BstACI GRCGYC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 691
BstDEI CTNAG 3 cut(s) 771, 869, 1140
BstDSI CCRYGG 1 cut(s) 1221
BstF5I GGATG 3 cut(s) 257, 577, 961
BstH2I RGCGCY 2 cut(s) 26, 1271
BstHHI GCGC 2 cut(s) 25, 1270
BstKTI GATC 5 cut(s) 276, 286, 784, 1099, 1243
BstMAI GTCTC 3 cut(s) 393, 500, 1181
BstMBI GATC 5 cut(s) 273, 283, 781, 1096, 1240
BstMWI GCNNNNNNNGC 3 cut(s) 29, 38, 247
BstNI CCWGG 3 cut(s) 366, 494, 953
BstSCI CCNGG 3 cut(s) 364, 492, 951
BstSFI CTRYAG 2 cut(s) 7, 777
BstV1I GCAGC 3 cut(s) 53, 763, 1200
BstZ17I GTATAC 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 1140
BsuRI GGCC 5 cut(s) 80, 227, 369, 492, 951
BtgI CCRYGG 1 cut(s) 1221
BtsCI GGATG 3 cut(s) 257, 577, 961
BtsI GCAGTG 2 cut(s) 328, 1099
BtsIMutI CAGTG 7 cut(s) 286, 328, 418, 651, 866, 896, 1099
CaiI CAGNNNCTG 2 cut(s) 365, 1270
CciI TCATGA 1 cut(s) 784
CfoI GCGC 2 cut(s) 25, 1270
Cfr13I GGNCC 5 cut(s) 79, 226, 496, 949, 1123
CseI GACGC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 710, 1183
CviAII CATG 3 cut(s) 785, 908, 1238
CviQI GTAC 2 cut(s) 710, 1183
DdeI CTNAG 3 cut(s) 771, 869, 1140
DinI GGCGCC 1 cut(s) 24
DpnI GATC 5 cut(s) 275, 285, 783, 1098, 1242
DpnII GATC 5 cut(s) 273, 283, 781, 1096, 1240
Eam1104I CTCTTC 2 cut(s) 157, 288
EarI CTCTTC 2 cut(s) 157, 288
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 1 cut(s) 1248
Eco47I GGWCC 2 cut(s) 496, 1123
Eco81I CCTNAGG 1 cut(s) 1140
EcoO109I RGGNCCY 2 cut(s) 496, 1123
EcoRI GAATTC 1 cut(s) 465
EcoRII CCWGG 3 cut(s) 364, 492, 951
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 1 cut(s) 261
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 3 cut(s) 788, 911, 1241
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 3 cut(s) 784, 907, 1237
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 3 cut(s) 86, 675, 924
Fnu4HI GCNGC 6 cut(s) 42, 71, 225, 239, 777, 1214
FokI GGATG 3 cut(s) 244, 584, 968
Fsp4HI GCNGC 6 cut(s) 42, 71, 225, 239, 777, 1214
FspBI CTAG 2 cut(s) 425, 1160
GlaI GCGC 2 cut(s) 24, 1269
GluI GCNGC 6 cut(s) 42, 71, 225, 239, 777, 1214
HaeII RGCGCY 2 cut(s) 26, 1271
HaeIII GGCC 5 cut(s) 80, 227, 369, 492, 951
HapII CCGG 1 cut(s) 569
HgaI GACGC 1 cut(s) 462
HhaI GCGC 2 cut(s) 25, 1270
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 788, 911, 1241
Hin6I GCGC 2 cut(s) 23, 1268
HinP1I GCGC 2 cut(s) 23, 1268
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 4 cut(s) 35, 832, 995, 1282
HpaII CCGG 1 cut(s) 569
Hpy166II GTNNAC 6 cut(s) 87, 406, 676, 824, 925, 1157
Hpy188I TCNGA 6 cut(s) 273, 340, 632, 1041, 1245, 1281
Hpy188III TCNNGA 6 cut(s) 313, 569, 785, 1049, 1078, 1139
Hpy8I GTNNAC 6 cut(s) 87, 406, 676, 824, 925, 1157
Hpy99I CGWCG 3 cut(s) 325, 328, 442
HpyAV CCTTC 2 cut(s) 175, 493
HpyCH4III ACNGT 7 cut(s) 49, 281, 361, 413, 673, 701, 891
HpyCH4IV ACGT 2 cut(s) 402, 820
HpyCH4V TGCA 9 cut(s) 455, 554, 590, 749, 779, 985, 1016, 1104, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 38, 247
HpyF3I CTNAG 3 cut(s) 771, 869, 1140
HpySE526I ACGT 2 cut(s) 402, 820
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 788, 911, 1241
HspAI GCGC 2 cut(s) 23, 1268
KasI GGCGCC 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 568
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 273, 283, 781, 1096, 1240
LmnI GCTCC 4 cut(s) 60, 571, 1030, 1141
Lsp1109I GCAGC 3 cut(s) 53, 763, 1200
LweI GCATC 1 cut(s) 1123
MaeI CTAG 2 cut(s) 425, 1160
MaeII ACGT 2 cut(s) 402, 820
MaeIII GTNAC 5 cut(s) 217, 433, 580, 640, 796
MalI GATC 5 cut(s) 275, 285, 783, 1098, 1242
MboI GATC 5 cut(s) 273, 283, 781, 1096, 1240
MboII GAAGA 2 cut(s) 144, 305
MfeI CAATTG 1 cut(s) 585
MluCI AATT 8 cut(s) 59, 203, 465, 585, 694, 813, 938, 1205
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 2 cut(s) 826, 1276
MroI TCCGGA 1 cut(s) 568
MseI TTAA 2 cut(s) 98, 501
MslI CAYNNNNRTG 2 cut(s) 664, 1023
MspA1I CMGCKG 2 cut(s) 32, 238
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 3 cut(s) 366, 494, 953
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 3 cut(s) 366, 494, 953
MwoI GCNNNNNNNGC 3 cut(s) 29, 38, 247
NarI GGCGCC 1 cut(s) 23
NdeII GATC 5 cut(s) 273, 283, 781, 1096, 1240
NlaIII CATG 3 cut(s) 788, 911, 1241
NlaIV GGNNCC 6 cut(s) 24, 56, 242, 567, 961, 1230
NmeAIII GCCGAG 1 cut(s) 865
NmuCI GTSAC 2 cut(s) 217, 640
NspV TTCGAA 1 cut(s) 691
PagI TCATGA 1 cut(s) 784
PfeI GAWTC 2 cut(s) 35, 995
PkrI GCNGC 6 cut(s) 43, 72, 226, 240, 778, 1215
PleI GAGTC 2 cut(s) 826, 1276
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 2 cut(s) 826, 1276
PpuMI RGGWCCY 2 cut(s) 496, 1123
Psp5II RGGWCCY 2 cut(s) 496, 1123
Psp6I CCWGG 3 cut(s) 364, 492, 951
PspGI CCWGG 3 cut(s) 364, 492, 951
PspN4I GGNNCC 6 cut(s) 24, 56, 242, 567, 961, 1230
PspPI GGNCC 5 cut(s) 79, 226, 496, 949, 1123
PspPPI RGGWCCY 2 cut(s) 496, 1123
PstI CTGCAG 1 cut(s) 781
PstNI CAGNNNCTG 2 cut(s) 365, 1270
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 2 cut(s) 711, 1184
RsaNI GTAC 2 cut(s) 710, 1183
RseI CAYNNNNRTG 2 cut(s) 664, 1023
SaqAI TTAA 2 cut(s) 98, 501
SatI GCNGC 6 cut(s) 42, 71, 225, 239, 777, 1214
Sau3AI GATC 5 cut(s) 273, 283, 781, 1096, 1240
Sau96I GGNCC 5 cut(s) 79, 226, 496, 949, 1123
SchI GAGTC 2 cut(s) 826, 1276
ScrFI CCNGG 3 cut(s) 366, 494, 953
SfaNI GCATC 1 cut(s) 1123
SfcI CTRYAG 2 cut(s) 7, 777
SfoI GGCGCC 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 691
SinI GGWCC 2 cut(s) 496, 1123
SmiMI CAYNNNNRTG 2 cut(s) 664, 1023
SmlI CTYRAG 2 cut(s) 834, 1078
SmoI CTYRAG 2 cut(s) 834, 1078
Sse9I AATT 8 cut(s) 59, 203, 465, 585, 694, 813, 938, 1205
SsiI CCGC 5 cut(s) 68, 71, 224, 238, 254
SspDI GGCGCC 1 cut(s) 22
SspMI CTAG 2 cut(s) 425, 1160
StyD4I CCNGG 3 cut(s) 364, 492, 951
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 7 cut(s) 49, 281, 361, 413, 673, 701, 891
TaiI ACGT 2 cut(s) 405, 823
TaqI TCGA 3 cut(s) 535, 691, 1285
TaqII GACCGA 1 cut(s) 205
TasI AATT 8 cut(s) 59, 203, 465, 585, 694, 813, 938, 1205
TatI WGTACW 1 cut(s) 709
TauI GCSGC 3 cut(s) 73, 227, 241
TfiI GAWTC 2 cut(s) 35, 995
Tru1I TTAA 2 cut(s) 98, 501
Tru9I TTAA 2 cut(s) 98, 501
TscAI CASTG 7 cut(s) 286, 335, 418, 658, 873, 896, 1106
TseFI GTSAC 2 cut(s) 217, 640
TseI GCWGC 3 cut(s) 41, 776, 1213
Tsp45I GTSAC 2 cut(s) 217, 640
TspDTI ATGAA 4 cut(s) 144, 588, 864, 951
TspGWI ACGGA 2 cut(s) 455, 1238
TspRI CASTG 7 cut(s) 286, 335, 418, 658, 873, 896, 1106
VpaK11BI GGWCC 2 cut(s) 496, 1123
XapI RAATTY 4 cut(s) 203, 465, 938, 1205
XmiI GTMKAC 3 cut(s) 86, 675, 924
XspI CTAG 2 cut(s) 425, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.