Rroxscaffold_3G00223790

Phosphoribosylaminoimidazole-succinocarboxamide synthase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
6901490 .. 6909950
8461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223790.1

Sequence Viewer

Length: 1611 bp
ATGGCGGTCCAAAATCAACCGCCCCTGGATGCCCTCCTCAACGGTGCTCGCAAAGAAGAGGTGCTTGGCGTCATTGGGACTTCATTGTCTAACTGTCTTTCCGAAACCAACCTCCACCTCACAGTTCCTAGACTCAAATCCAAAATCAGAGGCAAGGTTAGGGATGTTTATGACAGTGGGGATTATCTAGTTATGGTCACCACGGATCGGCAGAGTTCATTTGATGGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTAATGAAACGAGTTTATGGTGGTTTGACAAAACTCAACATATAACTTCAAATGCAGTTGTACCAGTCCCAGACGAAAATGTAACAATTGTCAAGAAATGTTCTGTTTTTCCGGTGGAGTTTGTGGTTAGAGGTTTTGTGACTGGAAGTACTGATACATCATTATGGACGGTCTACAGAAGTGGCGTTCAAAATTACTGTGGCAATGTACTTCTAGATGATCATGATGTTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGTCAAGCCGATTATGATGAACTTGTGGCTTTGGAGAATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGGGACAGGATGGTTCCATACATTTGATTGATGAGGTGCATACACCTGATTCAAGCAGATATCGGATTGCACATACTTATGAGGAACGTTTTCGGAATGGTCTTGAACCTGAGAATGTTGTTAAGGAGTTCTTGAGGTTGTGGTTTAAAGATCATTGCAATCCATATGAAGATGAGGTCCTTCCTGATGCCCCTGAAGAACTTGTTCGTGAACTATCTTGGCGATATATTTTCTTGTATGAGACAATTACAAAATCAAAATTCAAGATGCCTTCAACAGAGGATGGAGCTAATGAAAGCAATGCCGATGAATATGATCAACAAAAACTAAGCATGTCTGGGGAAACAGTGAAGTTGCTGGGTTGCTGGGCAAGTCCTTCTGCCCTCAGAGTCAAATGGACTTTGAAGCTGAAGGAGATCGAGTACGAGTATGTTGAAGAGGACCTCCCAAACAAAAGTCCCCTGCTCTTGAAGTACAACCCTGTTCACAAAAAGATACCAGTTCTTGTGCATGGTGGTCAGCCTATAGCAGAGTCGCTGGTTATACTTGAATACCTCGACGAGACTTGGAAGCAAAATTCAATCTTGCCACAAGATCCCTATGAAAGAGCTCAGGCGCGCTTCTGGGCCAAATTTGTAGACGAGAAGTGTGCGCCAGCAATCCTGAGTGCATTCACAAAGAACGGGGAAGAGAAAGAGAAGGCTGCAAAAGAAGCTAGAGAGAATCTCAAGATTCTGGAAAGTGGACTTGGGGAAAAGCAATTCTTTGGGGGTGAAAGCATAGGCTTTGTGGACATAGCCGCTGGGTGGATTGGAATATGGGCTAGATTGGTCGAGGAGATTGCAGAGGTAAATCTAATTGATACTGAGACGATGCCAGTGCTTGACACTTGGTTCAAAAGAGTTCTTGAGGTTCCAATTATTAAAGAATGCCTGCCACCTCAAGATAAACTGCTGGAGCACAACAAAGGCTTTCACAAGATGTTGACTGGAGGATCAAGTTGA

Protein Analysis

536

Amino Acids

60.73

Weight (kDa)

4.96

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAICAR_synt PF01259 49 - 261 1.5e-43 SAICAR synthetase
GST_N PF02798 318 - 390 3.6e-20 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 322 - 391 2.8e-13 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 326 - 391 3.1e-15 Glutathione S-transferase, N-terminal domain
GST_C PF00043 425 - 507 5.3e-06 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 85, 531
AccI GTMKAC 3 cut(s) 435, 585, 1245
AccII CGCG 1 cut(s) 1225
AciI CCGC 3 cut(s) 5, 20, 1407
AclI AACGTT 1 cut(s) 694
AclWI GGATC 3 cut(s) 213, 1196, 1609
AcsI RAATTY 5 cut(s) 228, 599, 866, 1183, 1238
AcuI CTGAAG 2 cut(s) 822, 1037
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 5 cut(s) 324, 412, 471, 1031, 1082
AfiI CCNNNNNNNGG 3 cut(s) 207, 251, 1413
AjnI CCWGG 2 cut(s) 24, 255
AjuI GAANNNNNNNTTGG 4 cut(s) 48, 80, 1338, 1370
AluBI AGCT 4 cut(s) 896, 1015, 1217, 1322
AluI AGCT 4 cut(s) 896, 1015, 1217, 1322
Alw21I GWGCWC 3 cut(s) 49, 1219, 1569
Alw26I GTCTC 3 cut(s) 842, 1163, 1469
AlwI GGATC 3 cut(s) 213, 1196, 1609
AoxI GGCC 2 cut(s) 253, 1233
ApeKI GCWGC 1 cut(s) 1310
ApoI RAATTY 5 cut(s) 228, 599, 866, 1183, 1238
Asp700I GAANNNNTTC 2 cut(s) 696, 810
AspLEI GCGC 3 cut(s) 1225, 1227, 1261
AspS9I GGNCC 5 cut(s) 7, 259, 784, 1048, 1233
AsuHPI GGTGA 2 cut(s) 190, 1391
AvaII GGWCC 4 cut(s) 7, 259, 784, 1048
BanII GRGCYC 1 cut(s) 1219
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
Bbv12I GWGCWC 3 cut(s) 49, 1219, 1569
BbvI GCAGC 1 cut(s) 1297
BccI CCATC 3 cut(s) 218, 611, 884
BcgI CGANNNNNNTGC 6 cut(s) 1238, 1272, 1430, 1464, 1468, 1502
BciT130I CCWGG 2 cut(s) 26, 257
BclI TGATCA 2 cut(s) 481, 922
BcoDI GTCTC 3 cut(s) 842, 1163, 1469
BfaI CTAG 5 cut(s) 129, 188, 476, 1323, 1431
BfmI CTRYAG 2 cut(s) 436, 1131
BisI GCNGC 2 cut(s) 1311, 1407
BlsI GCNGC 2 cut(s) 1312, 1408
BmcAI AGTACT 1 cut(s) 412
Bme1390I CCNGG 2 cut(s) 26, 257
Bme18I GGWCC 4 cut(s) 7, 259, 784, 1048
BmgT120I GGNCC 5 cut(s) 7, 259, 784, 1048, 1233
BmiI GGNNCC 2 cut(s) 622, 1521
BmrFI CCNGG 2 cut(s) 26, 257
BmsI GCATC 4 cut(s) 19, 784, 864, 1470
BplI GAGNNNNNCTC 2 cut(s) 1317, 1349
BpmI CTGGAG 2 cut(s) 486, 1583
Bpu10I CCTNAGC 1 cut(s) 1218
BpuEI CTTGAG 4 cut(s) 760, 1319, 1533, 1535
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 24, 201
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 4 cut(s) 557, 587, 1013, 1043
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 251, 1413
Bse1I ACTGG 5 cut(s) 326, 409, 1106, 1484, 1600
Bse3DI GCAATG 3 cut(s) 472, 760, 913
BseBI CCWGG 2 cut(s) 26, 257
BseDI CCNNGG 2 cut(s) 24, 201
BseGI GGATG 4 cut(s) 34, 169, 622, 895
BseLI CCNNNNNNNGG 3 cut(s) 207, 251, 1413
BseMI GCAATG 3 cut(s) 472, 760, 913
BseMII CTCAG 5 cut(s) 708, 1006, 1232, 1262, 1464
BseNI ACTGG 5 cut(s) 326, 409, 1106, 1484, 1600
BsePI GCGCGC 1 cut(s) 1223
BseRI GAGGAG 2 cut(s) 26, 1457
BseXI GCAGC 1 cut(s) 1297
BseYI CCCAGC 3 cut(s) 964, 972, 1409
Bsh1236I CGCG 1 cut(s) 1225
BshFI GGCC 2 cut(s) 255, 1235
BsiHKAI GWGCWC 3 cut(s) 49, 1219, 1569
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 4 cut(s) 91, 314, 624, 1050
BslI CCNNNNNNNGG 3 cut(s) 207, 251, 1413
BsmAI GTCTC 3 cut(s) 842, 1163, 1469
BsmBI CGTCTC 1 cut(s) 1469
BsmFI GGGAC 4 cut(s) 91, 314, 624, 1050
BsmI GAATGC 2 cut(s) 1277, 1541
BsnI GGCC 2 cut(s) 255, 1235
Bsp1286I GDGCHC 3 cut(s) 49, 1219, 1569
Bsp143I GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
BspACI CCGC 3 cut(s) 5, 20, 1407
BspANI GGCC 2 cut(s) 255, 1235
BspCNI CTCAG 5 cut(s) 709, 1005, 1231, 1263, 1465
BspFNI CGCG 1 cut(s) 1225
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 622, 1521
BspPI GGATC 3 cut(s) 213, 1196, 1609
BsrDI GCAATG 3 cut(s) 472, 760, 913
BsrI ACTGG 5 cut(s) 326, 409, 1106, 1484, 1600
BssECI CCNNGG 2 cut(s) 24, 201
BssHII GCGCGC 1 cut(s) 1223
BssMI GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 26, 257
Bst4CI ACNGT 7 cut(s) 44, 95, 124, 176, 433, 461, 955
Bst6I CTCTTC 3 cut(s) 51, 1038, 1290
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 49, 1225, 1263, 1541
BstDEI CTNAG 6 cut(s) 717, 935, 992, 1218, 1271, 1473
BstDSI CCRYGG 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 4 cut(s) 34, 169, 622, 895
BstFNI CGCG 1 cut(s) 1225
BstHHI GCGC 3 cut(s) 1225, 1227, 1261
BstKTI GATC 7 cut(s) 208, 484, 760, 925, 1026, 1204, 1604
BstMAI GTCTC 3 cut(s) 842, 1163, 1469
BstMBI GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
BstMWI GCNNNNNNNGC 1 cut(s) 1319
BstNI CCWGG 2 cut(s) 26, 257
BstNSI RCATGY 1 cut(s) 943
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 24, 255
BstSFI CTRYAG 2 cut(s) 436, 1131
BstUI CGCG 1 cut(s) 1225
BstV1I GCAGC 1 cut(s) 1297
BstX2I RGATCY 1 cut(s) 1201
BstYI RGATCY 1 cut(s) 1201
BsuRI GGCC 2 cut(s) 255, 1235
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 4 cut(s) 34, 169, 622, 895
BtsIMutI CAGTG 3 cut(s) 181, 960, 1491
Cac8I GCNNGC 4 cut(s) 49, 1225, 1263, 1541
CciI TCATGA 1 cut(s) 484
CfoI GCGC 3 cut(s) 1225, 1227, 1261
Cfr13I GGNCC 5 cut(s) 7, 259, 784, 1048, 1233
CseI GACGC 1 cut(s) 58
Csp6I GTAC 5 cut(s) 323, 411, 470, 1030, 1081
CviAII CATG 3 cut(s) 485, 940, 1118
CviQI GTAC 5 cut(s) 323, 411, 470, 1030, 1081
DdeI CTNAG 6 cut(s) 717, 935, 992, 1218, 1271, 1473
DpnI GATC 7 cut(s) 207, 483, 759, 924, 1025, 1203, 1603
DpnII GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
DraI TTTAAA 2 cut(s) 250, 754
DrdI GACNNNNNNGTC 2 cut(s) 85, 531
DseDI GACNNNNNNGTC 2 cut(s) 85, 531
Eam1104I CTCTTC 3 cut(s) 51, 1038, 1290
EarI CTCTTC 3 cut(s) 51, 1038, 1290
Ecl136II GAGCTC 1 cut(s) 1217
Eco24I GRGCYC 1 cut(s) 1219
Eco32I GATATC 1 cut(s) 668
Eco47I GGWCC 4 cut(s) 7, 259, 784, 1048
Eco53kI GAGCTC 1 cut(s) 1217
Eco57I CTGAAG 2 cut(s) 822, 1037
Eco91I GGTNACC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 1217
EcoO109I RGGNCCY 3 cut(s) 259, 784, 1048
EcoO65I GGTNACC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 24, 255
EcoRV GATATC 1 cut(s) 668
EcoT38I GRGCYC 1 cut(s) 1219
Esp3I CGTCTC 1 cut(s) 1469
FaeI CATG 3 cut(s) 488, 943, 1121
FalI AAGNNNNNCTT 6 cut(s) 48, 80, 722, 754, 1355, 1387
FaqI GGGAC 4 cut(s) 91, 314, 624, 1050
FatI CATG 3 cut(s) 484, 939, 1117
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 2 cut(s) 481, 922
FblI GTMKAC 3 cut(s) 435, 585, 1245
Fnu4HI GCNGC 2 cut(s) 1311, 1407
FokI GGATG 4 cut(s) 41, 176, 629, 902
FriOI GRGCYC 1 cut(s) 1219
Fsp4HI GCNGC 2 cut(s) 1311, 1407
FspBI CTAG 5 cut(s) 129, 188, 476, 1323, 1431
GlaI GCGC 3 cut(s) 1224, 1226, 1260
GluI GCNGC 2 cut(s) 1311, 1407
GsaI CCCAGC 3 cut(s) 968, 976, 1413
GsuI CTGGAG 2 cut(s) 486, 1583
HaeIII GGCC 2 cut(s) 255, 1235
HapII CCGG 1 cut(s) 374
HgaI GACGC 1 cut(s) 58
HhaI GCGC 3 cut(s) 1225, 1227, 1261
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 488, 943, 1121
Hin6I GCGC 3 cut(s) 1223, 1225, 1259
HinP1I GCGC 3 cut(s) 1223, 1225, 1259
HincII GTYRAC 1 cut(s) 1593
HindII GTYRAC 1 cut(s) 1593
HinfI GANTC 7 cut(s) 132, 532, 656, 996, 1139, 1330, 1339
HpaII CCGG 1 cut(s) 374
HphI GGTGA 2 cut(s) 190, 1391
Hpy166II GTNNAC 9 cut(s) 436, 524, 586, 818, 1093, 1246, 1352, 1399, 1593
Hpy188I TCNGA 5 cut(s) 103, 149, 672, 702, 995
Hpy8I GTNNAC 9 cut(s) 436, 524, 586, 818, 1093, 1246, 1352, 1399, 1593
Hpy99I CGWCG 1 cut(s) 1169
HpyAV CCTTC 5 cut(s) 797, 888, 993, 1012, 1300
HpyCH4III ACNGT 7 cut(s) 44, 95, 124, 176, 433, 461, 955
HpyCH4IV ACGT 2 cut(s) 520, 694
HpyCH4V TGCA 8 cut(s) 317, 646, 677, 765, 1117, 1277, 1313, 1451
HpyF10VI GCNNNNNNNGC 1 cut(s) 1319
HpyF3I CTNAG 6 cut(s) 717, 935, 992, 1218, 1271, 1473
HpySE526I ACGT 2 cut(s) 520, 694
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 488, 943, 1121
HspAI GCGC 3 cut(s) 1223, 1225, 1259
Ksp22I TGATCA 2 cut(s) 481, 922
Kzo9I GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
LmnI GCTCC 2 cut(s) 893, 1564
Lsp1109I GCAGC 1 cut(s) 1297
LweI GCATC 4 cut(s) 19, 784, 864, 1470
MaeI CTAG 5 cut(s) 129, 188, 476, 1323, 1431
MaeII ACGT 2 cut(s) 520, 694
MaeIII GTNAC 4 cut(s) 196, 343, 400, 496
MalI GATC 7 cut(s) 207, 483, 759, 924, 1025, 1203, 1603
MboI GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
MboII GAAGA 5 cut(s) 68, 788, 815, 1055, 1307
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 1201
MhlI GDGCHC 3 cut(s) 49, 1219, 1569
MlyI GAGTC 4 cut(s) 126, 541, 1005, 1148
MroXI GAANNNNTTC 2 cut(s) 696, 810
MseI TTAA 5 cut(s) 249, 264, 729, 753, 1530
MslI CAYNNNNRTG 2 cut(s) 424, 684
MspA1I CMGCKG 1 cut(s) 1409
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 2 cut(s) 26, 257
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 2 cut(s) 1277, 1541
MvaI CCWGG 2 cut(s) 26, 257
MvnI CGCG 1 cut(s) 1225
MwoI GCNNNNNNNGC 1 cut(s) 1319
NdeI CATATG 1 cut(s) 772
NdeII GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
NlaIII CATG 3 cut(s) 488, 943, 1121
NlaIV GGNNCC 2 cut(s) 622, 1521
NmuCI GTSAC 2 cut(s) 196, 400
NspI RCATGY 1 cut(s) 943
PagI TCATGA 1 cut(s) 484
PauI GCGCGC 1 cut(s) 1223
PctI GAATGC 2 cut(s) 1277, 1541
PdmI GAANNNNTTC 2 cut(s) 696, 810
PfeI GAWTC 3 cut(s) 656, 1330, 1339
PkrI GCNGC 2 cut(s) 1312, 1408
PleI GAGTC 4 cut(s) 126, 540, 1004, 1147
PpsI GAGTC 4 cut(s) 126, 540, 1004, 1147
PpuMI RGGWCCY 3 cut(s) 259, 784, 1048
Psp124BI GAGCTC 1 cut(s) 1219
Psp1406I AACGTT 1 cut(s) 694
Psp5II RGGWCCY 3 cut(s) 259, 784, 1048
Psp6I CCWGG 2 cut(s) 24, 255
PspEI GGTNACC 1 cut(s) 196
PspFI CCCAGC 3 cut(s) 964, 972, 1409
PspGI CCWGG 2 cut(s) 24, 255
PspN4I GGNNCC 2 cut(s) 622, 1521
PspPI GGNCC 5 cut(s) 7, 259, 784, 1048, 1233
PspPPI RGGWCCY 3 cut(s) 259, 784, 1048
PsuI RGATCY 1 cut(s) 1201
PteI GCGCGC 1 cut(s) 1223
RsaI GTAC 5 cut(s) 324, 412, 471, 1031, 1082
RsaNI GTAC 5 cut(s) 323, 411, 470, 1030, 1081
RseI CAYNNNNRTG 2 cut(s) 424, 684
SacI GAGCTC 1 cut(s) 1219
SaqAI TTAA 5 cut(s) 249, 264, 729, 753, 1530
SatI GCNGC 2 cut(s) 1311, 1407
Sau3AI GATC 7 cut(s) 205, 481, 757, 922, 1023, 1201, 1601
Sau96I GGNCC 5 cut(s) 7, 259, 784, 1048, 1233
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 4 cut(s) 126, 541, 1005, 1148
ScrFI CCNGG 2 cut(s) 26, 257
SduI GDGCHC 3 cut(s) 49, 1219, 1569
SfaNI GCATC 4 cut(s) 19, 784, 864, 1470
SfcI CTRYAG 2 cut(s) 436, 1131
SinI GGWCC 4 cut(s) 7, 259, 784, 1048
SmiMI CAYNNNNRTG 2 cut(s) 424, 684
SmlI CTYRAG 4 cut(s) 739, 1334, 1514, 1548
SmoI CTYRAG 4 cut(s) 739, 1334, 1514, 1548
SsiI CCGC 3 cut(s) 5, 20, 1407
SspMI CTAG 5 cut(s) 129, 188, 476, 1323, 1431
SstI GAGCTC 1 cut(s) 1219
StyD4I CCNGG 2 cut(s) 24, 255
TaaI ACNGT 7 cut(s) 44, 95, 124, 176, 433, 461, 955
TaiI ACGT 2 cut(s) 523, 697
TaqI TCGA 3 cut(s) 1026, 1164, 1440
TatI WGTACW 3 cut(s) 410, 469, 1080
TauI GCSGC 1 cut(s) 1409
TfiI GAWTC 3 cut(s) 656, 1330, 1339
Tru1I TTAA 5 cut(s) 249, 264, 729, 753, 1530
Tru9I TTAA 5 cut(s) 249, 264, 729, 753, 1530
TscAI CASTG 3 cut(s) 181, 960, 1491
TseFI GTSAC 2 cut(s) 196, 400
TseI GCWGC 1 cut(s) 1310
Tsp45I GTSAC 2 cut(s) 196, 400
TspDTI ATGAA 9 cut(s) 72, 207, 282, 564, 612, 789, 915, 930, 1224
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 3 cut(s) 181, 960, 1491
VpaK11BI GGWCC 4 cut(s) 7, 259, 784, 1048
XapI RAATTY 5 cut(s) 228, 599, 866, 1183, 1238
XbaI TCTAGA 1 cut(s) 475
XceI RCATGY 1 cut(s) 943
XmiI GTMKAC 3 cut(s) 435, 585, 1245
XmnI GAANNNNTTC 2 cut(s) 696, 810
XspI CTAG 5 cut(s) 129, 188, 476, 1323, 1431
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.