Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Forward (+)

26373013 .. 26377803

Gene Structure 4791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36000.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTCATCAGTACAGCCAAACCTTAAACCCTCCCAAAACCCTCATGATCCCCAAACACCCAAATCCCATCCCCTCATTTTCTTCCTCCAAAACTCTCAAACCCAATTCCAGAAGCTTCCCAAAACTCTCTGTGTCGGCCATGGCCGCCCAAGCGCCGCCGCCCCTGGATGCTCTGCTCAACGGTGCTCGTAAACAAGAGGTGCTTGATGCCATTGGGACTTCCTTGTCTAACTGCCTCTCTGAAACCAACCTCCACCTCACAGTTCCTGGCCTCCAATCCAAAACCAGAGGCAAGGTTAGGGATGTTTATGACTGTGGGGATTATCTTGTTATGGTCACCACGGATCGGCAGAGTGCATTTGATAGAATTCTTGCTTCCATTCCCTTCAAAGGCCAGGTCCTTAATGAAACAAGTTTATGGTGGTTTGACAAAACTCAACATATAACGTCAAATGCAGTTGTTTCGGTCCCAGACGAAAATGTAACAATTGCAAAGAAATGTTCTGTTTTTCCGGTGGAGTTTGTGGTCAGAGGTTATGTGACGGGAAGTACTGATACGTCATTATGGATGGTCTACAGAAATGGCGTTCGAAATTATTGCGGCAACGTACTTCCAGACGGCTTGGTAAAAAGCCAAAAGCTTCCTGCAAATATACTCACACCAACAACTAAGGCTGCAGATCATGACGTTCCTGTTACTCCAGCTGAGATTATTGAGAGTGGACTGATGAGTCAGGCCGATTATGATGAAGTAAGTAGGAAAGCATTGAGCTTGTTTGAGTATGGACAGCGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTACGAATTTGGGAAGGGACAGGATGGTTCCATACATTTGATTGATGAGGTGCATACACCTGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAACGTTTTCAGAATGGTCTTGAACCTGAAAATGTTGATAAGGAGTTTTTGAGGTTGTGGTTTAAAGATAATTGCAATCCATATGAAGATGAGGTCCTCCCTGATGCCCCTGAAGAACTTGTTCGTGAACTATCTTGGCGATATATTTTCTTGTATGAGACGATCACAAAATCAAAATTCAAGATGCCTTCTACAGAGGAGCCAATACATGATAGAATATCTCGCAATGTGGCACAAGCACTGTCATCCCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

396

Amino Acids

44.38

Weight (kDa)

5.85

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	96 - 341	3.9e-69	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	226, 732
AccI	GTMKAC	2 cut(s)	576, 825
AciI	CCGC	4 cut(s)	147, 158, 161, 603
AclI	AACGTT	1 cut(s)	934
AclWI	GGATC	2 cut(s)	43, 354
AcoI	YGGCCR	2 cut(s)	138, 144
AcsI	RAATTY	3 cut(s)	369, 839, 1106
AcuI	CTGAAG	1 cut(s)	1062
AfaI	GTAC	4 cut(s)	14, 553, 612, 836
AfiI	CCNNNNNNNGG	2 cut(s)	348, 392
AgsI	TTSAA	4 cut(s)	391, 900, 953, 1111
AjnI	CCWGG	3 cut(s)	165, 268, 396
AluBI	AGCT	4 cut(s)	117, 643, 707, 774
AluI	AGCT	4 cut(s)	117, 643, 707, 774
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	1082
AlwI	GGATC	2 cut(s)	43, 354
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	5 cut(s)	138, 144, 271, 394, 738
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	3 cut(s)	369, 839, 1106
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
Asp700I	GAANNNNTTC	2 cut(s)	936, 1050
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	400, 469, 1024
AsuHPI	GGTGA	1 cut(s)	331
AsuII	TTCGAA	1 cut(s)	592
AvaII	GGWCC	3 cut(s)	400, 469, 1024
BarI	GAAGNNNNNNTAC	2 cut(s)	541, 573
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	3 cut(s)	77, 565, 851
BceAI	ACGGC	1 cut(s)	637
BcgI	CGANNNNNNTGC	4 cut(s)	447, 481, 582, 616
BciT130I	CCWGG	3 cut(s)	167, 270, 398
BcoDI	GTCTC	1 cut(s)	1082
BfmI	CTRYAG	3 cut(s)	577, 678, 1122
BfoI	RGCGCY	1 cut(s)	158
BisI	GCNGC	5 cut(s)	147, 158, 161, 604, 678
BlsI	GCNGC	5 cut(s)	148, 159, 162, 605, 679
BmcAI	AGTACT	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	167, 270, 398
Bme18I	GGWCC	3 cut(s)	400, 469, 1024
BmgT120I	GGNCC	3 cut(s)	400, 469, 1024
BmiI	GGNNCC	3 cut(s)	471, 862, 1131
BmrFI	CCNGG	3 cut(s)	167, 270, 398
BmsI	GCATC	4 cut(s)	160, 199, 1024, 1104
BpmI	CTGGAG	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	141, 165, 342
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 392
Bse3DI	GCAATG	1 cut(s)	1162
BseBI	CCWGG	3 cut(s)	167, 270, 398
BseDI	CCNNGG	3 cut(s)	141, 165, 342
BseGI	GGATG	6 cut(s)	69, 175, 310, 576, 862, 1175
BseLI	CCNNNNNNNGG	2 cut(s)	348, 392
BseMI	GCAATG	1 cut(s)	1162
BseMII	CTCAG	1 cut(s)	699
BseRI	GAGGAG	1 cut(s)	1142
BseXI	GCAGC	1 cut(s)	664
BshFI	GGCC	5 cut(s)	140, 146, 273, 396, 740
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	3 cut(s)	232, 455, 864
BslI	CCNNNNNNNGG	2 cut(s)	348, 392
BsmAI	GTCTC	1 cut(s)	1082
BsmBI	CGTCTC	1 cut(s)	1082
BsmFI	GGGAC	3 cut(s)	232, 455, 864
BsnI	GGCC	5 cut(s)	140, 146, 273, 396, 740
Bsp119I	TTCGAA	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	48, 346, 682, 1092
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	4 cut(s)	147, 158, 161, 603
BspANI	GGCC	5 cut(s)	140, 146, 273, 396, 740
BspCNI	CTCAG	1 cut(s)	700
BspHI	TCATGA	2 cut(s)	45, 685
BspLI	GGNNCC	3 cut(s)	471, 862, 1131
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	2 cut(s)	43, 354
BspT104I	TTCGAA	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	1162
BssECI	CCNNGG	3 cut(s)	141, 165, 342
BssMI	GATC	4 cut(s)	48, 346, 682, 1092
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	167, 270, 398
Bst4CI	ACNGT	4 cut(s)	185, 265, 317, 1173
BstBI	TTCGAA	1 cut(s)	592
BstDEI	CTNAG	2 cut(s)	672, 708
BstDSI	CCRYGG	2 cut(s)	141, 342
BstEII	GGTNACC	1 cut(s)	337
BstF5I	GGATG	6 cut(s)	69, 175, 310, 576, 862, 1175
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	4 cut(s)	51, 349, 685, 1095
BstMAI	GTCTC	1 cut(s)	1082
BstMBI	GATC	4 cut(s)	48, 346, 682, 1092
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 152
BstNI	CCWGG	3 cut(s)	167, 270, 398
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	3 cut(s)	165, 268, 396
BstSFI	CTRYAG	3 cut(s)	577, 678, 1122
BstV1I	GCAGC	1 cut(s)	664
BsuRI	GGCC	5 cut(s)	140, 146, 273, 396, 740
BtgI	CCRYGG	2 cut(s)	141, 342
BtsCI	GGATG	6 cut(s)	69, 175, 310, 576, 862, 1175
BtsIMutI	CAGTG	1 cut(s)	1169
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	2 cut(s)	45, 685
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	400, 469, 1024
Csp6I	GTAC	4 cut(s)	13, 552, 611, 835
CviAII	CATG	5 cut(s)	46, 142, 686, 809, 1139
CviQI	GTAC	4 cut(s)	13, 552, 611, 835
DdeI	CTNAG	2 cut(s)	672, 708
DpnI	GATC	4 cut(s)	50, 348, 684, 1094
DpnII	GATC	4 cut(s)	48, 346, 682, 1092
DraI	TTTAAA	1 cut(s)	994
DrdI	GACNNNNNNGTC	2 cut(s)	226, 732
DseDI	GACNNNNNNGTC	2 cut(s)	226, 732
EaeI	YGGCCR	2 cut(s)	138, 144
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	400, 469, 1024
Eco57I	CTGAAG	1 cut(s)	1062
Eco91I	GGTNACC	1 cut(s)	337
EcoO109I	RGGNCCY	2 cut(s)	400, 1024
EcoO65I	GGTNACC	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	3 cut(s)	165, 268, 396
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	1082
FaeI	CATG	5 cut(s)	49, 145, 689, 812, 1142
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	3 cut(s)	232, 455, 864
FatI	CATG	5 cut(s)	45, 141, 685, 808, 1138
FauNDI	CATATG	1 cut(s)	1012
FblI	GTMKAC	2 cut(s)	576, 825
Fnu4HI	GCNGC	5 cut(s)	147, 158, 161, 604, 678
FokI	GGATG	6 cut(s)	56, 182, 317, 583, 869, 1162
Fsp4HI	GCNGC	5 cut(s)	147, 158, 161, 604, 678
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	5 cut(s)	147, 158, 161, 604, 678
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	5 cut(s)	140, 146, 273, 396, 740
HapII	CCGG	1 cut(s)	515
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	5 cut(s)	49, 145, 689, 812, 1142
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	2 cut(s)	115, 641
HinfI	GANTC	2 cut(s)	733, 896
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	5 cut(s)	194, 577, 725, 826, 1058
Hpy188I	TCNGA	3 cut(s)	244, 533, 942
Hpy188III	TCNNGA	7 cut(s)	46, 111, 617, 686, 950, 1055, 1111
Hpy8I	GTNNAC	5 cut(s)	194, 577, 725, 826, 1058
HpyAV	CCTTC	3 cut(s)	397, 841, 1128
HpyCH4III	ACNGT	4 cut(s)	185, 265, 317, 1173
HpyCH4IV	ACGT	5 cut(s)	449, 560, 609, 690, 934
HpyCH4V	TGCA	8 cut(s)	359, 458, 494, 650, 680, 886, 917, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 152
HpyF3I	CTNAG	2 cut(s)	672, 708
HpySE526I	ACGT	5 cut(s)	449, 560, 609, 690, 934
Hsp92II	CATG	5 cut(s)	49, 145, 689, 812, 1142
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	48, 346, 682, 1092
LmnI	GCTCC	2 cut(s)	805, 1129
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	4 cut(s)	160, 199, 1024, 1104
MaeII	ACGT	5 cut(s)	449, 560, 609, 690, 934
MaeIII	GTNAC	4 cut(s)	337, 484, 541, 697
MalI	GATC	4 cut(s)	50, 348, 684, 1094
MboI	GATC	4 cut(s)	48, 346, 682, 1092
MboII	GAAGA	3 cut(s)	75, 1028, 1055
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	7 cut(s)	106, 369, 489, 595, 839, 1000, 1106
MlyI	GAGTC	1 cut(s)	742
MroXI	GAANNNNTTC	2 cut(s)	936, 1050
MseI	TTAA	3 cut(s)	26, 405, 993
MslI	CAYNNNNRTG	1 cut(s)	924
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	3 cut(s)	167, 270, 398
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	3 cut(s)	167, 270, 398
MwoI	GCNNNNNNNGC	2 cut(s)	146, 152
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	1012
NdeII	GATC	4 cut(s)	48, 346, 682, 1092
NlaIII	CATG	5 cut(s)	49, 145, 689, 812, 1142
NlaIV	GGNNCC	3 cut(s)	471, 862, 1131
NmuCI	GTSAC	2 cut(s)	337, 541
NspV	TTCGAA	1 cut(s)	592
PagI	TCATGA	2 cut(s)	45, 685
PdmI	GAANNNNTTC	2 cut(s)	936, 1050
PfeI	GAWTC	1 cut(s)	896
PkrI	GCNGC	5 cut(s)	148, 159, 162, 605, 679
PleI	GAGTC	1 cut(s)	741
PpsI	GAGTC	1 cut(s)	741
PpuMI	RGGWCCY	2 cut(s)	400, 1024
Psp1406I	AACGTT	1 cut(s)	934
Psp5II	RGGWCCY	2 cut(s)	400, 1024
Psp6I	CCWGG	3 cut(s)	165, 268, 396
PspEI	GGTNACC	1 cut(s)	337
PspGI	CCWGG	3 cut(s)	165, 268, 396
PspN4I	GGNNCC	3 cut(s)	471, 862, 1131
PspPI	GGNCC	3 cut(s)	400, 469, 1024
PspPPI	RGGWCCY	2 cut(s)	400, 1024
PstI	CTGCAG	1 cut(s)	682
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	4 cut(s)	14, 553, 612, 836
RsaNI	GTAC	4 cut(s)	13, 552, 611, 835
RseI	CAYNNNNRTG	1 cut(s)	924
SaqAI	TTAA	3 cut(s)	26, 405, 993
SatI	GCNGC	5 cut(s)	147, 158, 161, 604, 678
Sau3AI	GATC	4 cut(s)	48, 346, 682, 1092
Sau96I	GGNCC	3 cut(s)	400, 469, 1024
ScaI	AGTACT	1 cut(s)	553
SchI	GAGTC	1 cut(s)	742
ScrFI	CCNGG	3 cut(s)	167, 270, 398
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	4 cut(s)	160, 199, 1024, 1104
SfcI	CTRYAG	3 cut(s)	577, 678, 1122
SfuI	TTCGAA	1 cut(s)	592
SinI	GGWCC	3 cut(s)	400, 469, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	924
Sse9I	AATT	7 cut(s)	106, 369, 489, 595, 839, 1000, 1106
SsiI	CCGC	4 cut(s)	147, 158, 161, 603
StyD4I	CCNGG	3 cut(s)	165, 268, 396
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	4 cut(s)	185, 265, 317, 1173
TaiI	ACGT	5 cut(s)	452, 563, 612, 693, 937
TaqI	TCGA	1 cut(s)	592
TaqII	GACCGA	1 cut(s)	457
TasI	AATT	7 cut(s)	106, 369, 489, 595, 839, 1000, 1106
TatI	WGTACW	2 cut(s)	12, 551
TauI	GCSGC	4 cut(s)	149, 160, 163, 606
TfiI	GAWTC	1 cut(s)	896
Tru1I	TTAA	3 cut(s)	26, 405, 993
Tru9I	TTAA	3 cut(s)	26, 405, 993
TscAI	CASTG	1 cut(s)	1176
TseFI	GTSAC	2 cut(s)	337, 541
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	2 cut(s)	337, 541
TspDTI	ATGAA	3 cut(s)	423, 765, 1029
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	1176
VpaK11BI	GGWCC	3 cut(s)	400, 469, 1024
XapI	RAATTY	3 cut(s)	369, 839, 1106
XmiI	GTMKAC	2 cut(s)	576, 825
XmnI	GAANNNNTTC	2 cut(s)	936, 1050
ZrmI	AGTACT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.