Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

35897677 .. 35901488

Gene Structure 3812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG336600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTACTTTCCAGTGAAACTCCAAAACCAAATGGCTCAGTATACCCAAACCTTAAACCCTCCCAAAACCCTCATCCCCAAGCTCCCAAATCCCAACCCCGGTCCTCTTTCTCCTCCTTCAAAACCACAAAACCCAAATCCAAAAGCTTCCCAACACTCTCTGTCTCGGCCCAAAATCAACGGCCCCTGGATGCCCTGCTCAACGGTTCTCGCAAACAAGAGGTGCTTGGCACTATTAGGAGTTCCTTGTCAAACTGTCTTTCTGAAATCAATCTCCACCTCACAGTTGGTGGCCTCAAATCCAAAAGCAGAGGCAAGGATAGGGATGTTTATGACAGTGGTGATTATCTAGTTATGGTCACCACAGACAGGCAGAGTTCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTGATGAAACAAGTTTATGGTGGTTTGACAAAACTCGACATATAACATCAAATGCAGTTGTATCGGTCCCAGATGAAAATGTAACAATTGCAAAGAAATGTTCTGTTTTTCCGGTGGAGGTTGTGGTCAGAGGCTTGGTAAAGAGCCAAAAGTTTCCTGCTAATATACTCACACCAACAACTAAGGCTGCAGATCATGACGTTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGTCAACCGGATTATGATGAACGAGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGCGACATGATGATTCCATACATTTTATTGATGAGATATATTTTCTTGTACAAGACAATCACAAAATCAAAATTCAAGATGCCTTCGACAGAGGAGCCAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

282

Amino Acids

31.47

Weight (kDa)

8.39

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	103 - 260	3.7e-30	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	666
AccI	GTMKAC	2 cut(s)	42, 720
AcsI	RAATTY	3 cut(s)	390, 734, 813
AfaI	GTAC	2 cut(s)	6, 792
AfiI	CCNNNNNNNGG	3 cut(s)	99, 369, 413
AgsI	TTSAA	3 cut(s)	121, 653, 818
AjnI	CCWGG	2 cut(s)	186, 417
AluBI	AGCT	2 cut(s)	83, 147
AluI	AGCT	2 cut(s)	83, 147
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	4 cut(s)	168, 182, 292, 415
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	3 cut(s)	390, 734, 813
AspS9I	GGNCC	5 cut(s)	102, 169, 183, 421, 490
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	352, 353
AvaII	GGWCC	3 cut(s)	102, 421, 490
BbvI	GCAGC	1 cut(s)	598
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	2 cut(s)	188, 419
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	612
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
Bme1390I	CCNGG	3 cut(s)	100, 188, 419
Bme18I	GGWCC	3 cut(s)	102, 421, 490
BmgT120I	GGNCC	5 cut(s)	102, 169, 183, 421, 490
BmiI	GGNNCC	3 cut(s)	185, 492, 838
BmrFI	CCNGG	3 cut(s)	100, 188, 419
BmsI	GCATC	2 cut(s)	181, 811
BpmI	CTGGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	98, 186
BsaWI	WCCGGW	2 cut(s)	535, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 369, 413
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	188, 419
BseDI	CCNNGG	2 cut(s)	98, 186
BseGI	GGATG	3 cut(s)	73, 196, 331
BseLI	CCNNNNNNNGG	3 cut(s)	99, 369, 413
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	2 cut(s)	103, 849
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	4 cut(s)	170, 184, 294, 417
BsiSI	CCGG	3 cut(s)	100, 536, 674
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	3 cut(s)	99, 369, 413
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	4 cut(s)	170, 184, 294, 417
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	1 cut(s)	616
BspANI	GGCC	4 cut(s)	170, 184, 294, 417
BspCNI	CTCAG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	185, 492, 838
BspMAI	CTGCAG	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	98, 186
BssMI	GATC	1 cut(s)	616
BssNAI	GTATAC	1 cut(s)	43
Bst1107I	GTATAC	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	188, 419
Bst4CI	ACNGT	4 cut(s)	206, 257, 286, 338
BstAUI	TGTACA	1 cut(s)	790
BstDEI	CTNAG	2 cut(s)	37, 606
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	3 cut(s)	73, 196, 331
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	616
BstNI	CCWGG	2 cut(s)	188, 419
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	98, 186, 417
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	170, 184, 294, 417
BtsCI	GGATG	3 cut(s)	73, 196, 331
BtsIMutI	CAGTG	2 cut(s)	19, 343
CciI	TCATGA	1 cut(s)	619
Cfr13I	GGNCC	5 cut(s)	102, 169, 183, 421, 490
Csp6I	GTAC	2 cut(s)	5, 791
CviAII	CATG	4 cut(s)	620, 704, 749, 846
CviQI	GTAC	2 cut(s)	5, 791
DdeI	CTNAG	2 cut(s)	37, 606
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DraI	TTTAAA	1 cut(s)	412
DrdI	GACNNNNNNGTC	1 cut(s)	666
DseDI	GACNNNNNNGTC	1 cut(s)	666
Eco47I	GGWCC	3 cut(s)	102, 421, 490
Eco91I	GGTNACC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	186, 417
FaeI	CATG	4 cut(s)	623, 707, 752, 849
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	4 cut(s)	619, 703, 748, 845
FblI	GTMKAC	2 cut(s)	42, 720
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	3 cut(s)	60, 203, 338
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	4 cut(s)	170, 184, 294, 417
HapII	CCGG	3 cut(s)	100, 536, 674
Hin1II	CATG	4 cut(s)	623, 707, 752, 849
HincII	GTYRAC	1 cut(s)	671
HindII	GTYRAC	1 cut(s)	671
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	2 cut(s)	667, 755
HpaII	CCGG	3 cut(s)	100, 536, 674
HphI	GGTGA	2 cut(s)	352, 353
Hpy166II	GTNNAC	4 cut(s)	43, 659, 671, 721
Hpy188I	TCNGA	2 cut(s)	265, 554
Hpy188III	TCNNGA	3 cut(s)	620, 638, 818
Hpy8I	GTNNAC	4 cut(s)	43, 659, 671, 721
HpyAV	CCTTC	2 cut(s)	127, 835
HpyCH4III	ACNGT	4 cut(s)	206, 257, 286, 338
HpyCH4IV	ACGT	2 cut(s)	624, 655
HpyCH4V	TGCA	3 cut(s)	479, 515, 614
HpyF3I	CTNAG	2 cut(s)	37, 606
HpySE526I	ACGT	2 cut(s)	624, 655
Hsp92II	CATG	4 cut(s)	623, 707, 752, 849
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	3 cut(s)	88, 700, 836
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	2 cut(s)	181, 811
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	624, 655
MaeIII	GTNAC	3 cut(s)	358, 505, 631
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MfeI	CAATTG	1 cut(s)	510
MluCI	AATT	5 cut(s)	390, 510, 648, 734, 813
MlyI	GAGTC	1 cut(s)	676
MseI	TTAA	2 cut(s)	54, 411
MspI	CCGG	3 cut(s)	100, 536, 674
MspR9I	CCNGG	3 cut(s)	100, 188, 419
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	188, 419
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	4 cut(s)	623, 707, 752, 849
NlaIV	GGNNCC	3 cut(s)	185, 492, 838
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	675
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	186, 417
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	2 cut(s)	186, 417
PspN4I	GGNNCC	3 cut(s)	185, 492, 838
PspPI	GGNCC	5 cut(s)	102, 169, 183, 421, 490
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	616
RsaI	GTAC	2 cut(s)	6, 792
RsaNI	GTAC	2 cut(s)	5, 791
SaqAI	TTAA	2 cut(s)	54, 411
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	5 cut(s)	102, 169, 183, 421, 490
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	3 cut(s)	100, 188, 419
SetI	ASST	9 cut(s)	54, 85, 149, 225, 282, 423, 546, 627, 658
SfaNI	GCATC	2 cut(s)	181, 811
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	3 cut(s)	102, 421, 490
Sse9I	AATT	5 cut(s)	390, 510, 648, 734, 813
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	98, 186, 417
TaaI	ACNGT	4 cut(s)	206, 257, 286, 338
TaiI	ACGT	2 cut(s)	627, 658
TaqI	TCGA	2 cut(s)	460, 828
TaqII	GACCGA	1 cut(s)	478
TasI	AATT	5 cut(s)	390, 510, 648, 734, 813
TatI	WGTACW	1 cut(s)	790
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	2 cut(s)	54, 411
Tru9I	TTAA	2 cut(s)	54, 411
TscAI	CASTG	2 cut(s)	19, 343
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	369, 444, 513, 699, 747
TspRI	CASTG	2 cut(s)	19, 343
VpaK11BI	GGWCC	3 cut(s)	102, 421, 490
XapI	RAATTY	3 cut(s)	390, 734, 813
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmiI	GTMKAC	2 cut(s)	42, 720
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.