RLG00000020456

Phosphoribosylaminoimidazole-succinocarboxamide synthase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
65249754 .. 65254460
4707 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020456

Sequence Viewer

Length: 1176 bp
ATGGCGGCTCAGCATACCCGAACCTTAAACCCTCCCAAAACCCTCATCCCCAAGCTCCCAAATCCCAACCCCTCTTTCTCCTCCTTCAAAACCCCAAAACCCAAATCCAAAAGCTTCTCATCACTCTCTGTCTCGGCCATGGTGGCCCAAAATCAACCGCCTCTGGATACTCTGCTCAACGGTGCTCGCAAACAAGAGGTGCTTGGCGCCATTGGGACTTCATTGTCTAACTGTCTTACCGAAACAAACCTCAACCTCACAGTTCCTGGCCTGAAATCCAAAACCAGAGGCAAGGTTAGGGATGTTTACGACAGTGGGGATTATCTCGTTATGGTCACCACGGATCGGCAGAGTGCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCAGTTTCCATTTATGGTGGTTTGACAAAACTCAACATATAACGTCAAATGCTGTTGTATCGGTCCCAGATGAAAATGTAACAATTGCGAAGAAATGTTCTGTTTTTCCAGTGGAGTTTGTGGTCAGAGGTTTTTTGACTGGAAGTACTGATACATCATTATGGACGGTCTACAGAAGTGGCGTTCGAAATTACTGTGGCAATGTACTTCCAGACGGCTTGGTAAAAGGCCAAAAGCTTCCTGCAAATATACTCACACCAACAACTAAGGCTGCAGATCATGATGTTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGTCGAGCCGATTATGATGAAGTAAGTCGGAAAGCATTAAACTTGTTTGAGTATGGACAGCGTGTGGCTTTGGAGCATGGGTTGATATTAGTAGACACAAAGTATGAATTTGGAAAGGGACAGGATGGTTCCATACATTTGATTGATGAGGTGCACACCCCTGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAACGTTTTCAGAATAGTCTTGAACCTGAGAATGTTGATAAGGAGTTCTTGAGGTTGTGGTTTAAAGATCATTGCAATCCATATGAAGATGAGGTCCTCCCTGATGCCCCTGAAGAACTTGTTCGTGAACTATCTTGGCGATATATTTTCTTGTATGAGACAATTACAAAATCAAAATTCAAGATGCCTTCAACAGAGGAGCCAATACATGATCGAATATCTCGCAATGTGGCACAAGCACTGTCATCTCTGTAA

Protein Analysis

392

Amino Acids

44.04

Weight (kDa)

6.38

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAICAR_synt PF01259 95 - 338 1e-63 SAICAR synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 223, 723
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 2 cut(s) 567, 816
AciI CCGC 2 cut(s) 5, 158
AclI AACGTT 1 cut(s) 925
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 3 cut(s) 366, 830, 1097
AcuI CTGAAG 1 cut(s) 1053
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 544, 603
AfiI CCNNNNNNNGG 2 cut(s) 345, 389
AgsI TTSAA 6 cut(s) 88, 710, 891, 944, 1102, 1113
AjnI CCWGG 2 cut(s) 265, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 3 cut(s) 55, 114, 634
AluI AGCT 3 cut(s) 55, 114, 634
Alw21I GWGCWC 2 cut(s) 187, 879
Alw26I GTCTC 2 cut(s) 136, 1073
Alw44I GTGCAC 1 cut(s) 875
AlwI GGATC 1 cut(s) 351
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 5 cut(s) 135, 144, 268, 391, 625
ApaLI GTGCAC 1 cut(s) 875
ApeKI GCWGC 1 cut(s) 668
ApoI RAATTY 3 cut(s) 366, 830, 1097
Asp700I GAANNNNTTC 2 cut(s) 927, 1041
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 3 cut(s) 145, 460, 1015
AsuHPI GGTGA 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 583
AvaII GGWCC 2 cut(s) 460, 1015
BaeGI GKGCMC 1 cut(s) 879
BanI GGYRCC 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 532, 564
Bbv12I GWGCWC 2 cut(s) 187, 879
BbvI GCAGC 1 cut(s) 655
BccI CCATC 1 cut(s) 842
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 2 cut(s) 267, 395
BciVI GTATCC 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 136, 1073
BfmI CTRYAG 2 cut(s) 568, 669
BfoI RGCGCY 1 cut(s) 210
BfuI GTATCC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 6, 669
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 2 cut(s) 7, 670
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 2 cut(s) 267, 395
Bme18I GGWCC 2 cut(s) 460, 1015
BmgT120I GGNCC 3 cut(s) 145, 460, 1015
BmiI GGNNCC 4 cut(s) 208, 462, 853, 1122
BmrFI CCNGG 2 cut(s) 267, 395
BmsI GCATC 2 cut(s) 1015, 1095
BpmI CTGGAG 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 583
BpuEI CTTGAG 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 138, 339
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 389
Bse1I ACTGG 2 cut(s) 506, 541
Bse3DI GCAATG 3 cut(s) 604, 991, 1153
BseBI CCWGG 2 cut(s) 267, 395
BseDI CCNNGG 2 cut(s) 138, 339
BseGI GGATG 3 cut(s) 45, 307, 853
BseLI CCNNNNNNNGG 2 cut(s) 345, 389
BseMI GCAATG 3 cut(s) 604, 991, 1153
BseMII CTCAG 2 cut(s) 23, 939
BseNI ACTGG 2 cut(s) 506, 541
BseRI GAGGAG 2 cut(s) 70, 1133
BseSI GKGCMC 1 cut(s) 879
BseXI GCAGC 1 cut(s) 655
BshFI GGCC 5 cut(s) 137, 146, 270, 393, 627
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 187, 879
BslFI GGGAC 3 cut(s) 229, 446, 855
BslI CCNNNNNNNGG 2 cut(s) 345, 389
BsmAI GTCTC 2 cut(s) 136, 1073
BsmFI GGGAC 3 cut(s) 229, 446, 855
BsnI GGCC 5 cut(s) 137, 146, 270, 393, 627
Bsp119I TTCGAA 1 cut(s) 583
Bsp1286I GDGCHC 2 cut(s) 187, 879
Bsp143I GATC 4 cut(s) 343, 673, 988, 1132
Bsp1720I GCTNAGC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 2 cut(s) 5, 158
BspANI GGCC 5 cut(s) 137, 146, 270, 393, 627
BspCNI CTCAG 2 cut(s) 22, 940
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 4 cut(s) 208, 462, 853, 1122
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 583
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 3 cut(s) 604, 991, 1153
BsrI ACTGG 2 cut(s) 506, 541
BssECI CCNNGG 2 cut(s) 138, 339
BssMI GATC 4 cut(s) 343, 673, 988, 1132
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 267, 395
Bst4CI ACNGT 7 cut(s) 182, 233, 262, 314, 565, 593, 1164
BstACI GRCGYC 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 9, 663, 948
BstDSI CCRYGG 2 cut(s) 138, 339
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 3 cut(s) 45, 307, 853
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 4 cut(s) 346, 676, 991, 1135
BstMAI GTCTC 2 cut(s) 136, 1073
BstMBI GATC 4 cut(s) 343, 673, 988, 1132
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 2 cut(s) 267, 395
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 265, 393
BstSFI CTRYAG 2 cut(s) 568, 669
BstSLI GKGCMC 1 cut(s) 879
BstV1I GCAGC 1 cut(s) 655
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 5 cut(s) 137, 146, 270, 393, 627
BtgI CCRYGG 2 cut(s) 138, 339
BtsCI GGATG 3 cut(s) 45, 307, 853
BtsIMutI CAGTG 3 cut(s) 319, 513, 1160
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 266
CciI TCATGA 1 cut(s) 676
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 145, 460, 1015
Csp6I GTAC 2 cut(s) 543, 602
CviAII CATG 4 cut(s) 139, 677, 800, 1130
CviQI GTAC 2 cut(s) 543, 602
DdeI CTNAG 3 cut(s) 9, 663, 948
DinI GGCGCC 1 cut(s) 208
DpnI GATC 4 cut(s) 345, 675, 990, 1134
DpnII GATC 4 cut(s) 343, 673, 988, 1132
DraI TTTAAA 2 cut(s) 388, 985
DrdI GACNNNNNNGTC 2 cut(s) 223, 723
DseDI GACNNNNNNGTC 2 cut(s) 223, 723
EaeI YGGCCR 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 460, 1015
Eco57I CTGAAG 1 cut(s) 1053
Eco91I GGTNACC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 1015
EcoO65I GGTNACC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 265, 393
EcoT14I CCWWGG 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 142, 680, 803, 1133
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 953, 985
FaqI GGGAC 3 cut(s) 229, 446, 855
FatI CATG 4 cut(s) 138, 676, 799, 1129
FauNDI CATATG 1 cut(s) 1003
FblI GTMKAC 2 cut(s) 567, 816
Fnu4HI GCNGC 2 cut(s) 6, 669
FokI GGATG 3 cut(s) 32, 314, 860
Fsp4HI GCNGC 2 cut(s) 6, 669
GlaI GCGC 1 cut(s) 208
GluI GCNGC 2 cut(s) 6, 669
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 5 cut(s) 137, 146, 270, 393, 627
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 4 cut(s) 142, 680, 803, 1133
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 2 cut(s) 112, 632
HinfI GANTC 2 cut(s) 724, 887
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 6 cut(s) 307, 568, 716, 817, 877, 1049
Hpy188I TCNGA 3 cut(s) 524, 753, 933
Hpy188III TCNNGA 8 cut(s) 164, 608, 677, 695, 941, 970, 1046, 1102
Hpy8I GTNNAC 6 cut(s) 307, 568, 716, 817, 877, 1049
HpyAV CCTTC 2 cut(s) 94, 1119
HpyCH4III ACNGT 7 cut(s) 182, 233, 262, 314, 565, 593, 1164
HpyCH4IV ACGT 3 cut(s) 440, 712, 925
HpyCH4V TGCA 6 cut(s) 356, 641, 671, 877, 908, 996
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 9, 663, 948
HpySE526I ACGT 3 cut(s) 440, 712, 925
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 4 cut(s) 142, 680, 803, 1133
HspAI GCGC 1 cut(s) 207
KasI GGCGCC 1 cut(s) 206
Kzo9I GATC 4 cut(s) 343, 673, 988, 1132
LmnI GCTCC 3 cut(s) 60, 796, 1120
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 2 cut(s) 1015, 1095
MaeII ACGT 3 cut(s) 440, 712, 925
MaeIII GTNAC 3 cut(s) 334, 475, 688
MalI GATC 4 cut(s) 345, 675, 990, 1134
MboI GATC 4 cut(s) 343, 673, 988, 1132
MboII GAAGA 3 cut(s) 499, 1019, 1046
MfeI CAATTG 1 cut(s) 480
MhlI GDGCHC 2 cut(s) 187, 879
MluCI AATT 7 cut(s) 366, 480, 586, 705, 830, 1083, 1097
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 1 cut(s) 733
MmeI TCCRAC 1 cut(s) 731
MroXI GAANNNNTTC 2 cut(s) 927, 1041
MseI TTAA 4 cut(s) 26, 387, 761, 984
MslI CAYNNNNRTG 2 cut(s) 556, 915
MspR9I CCNGG 2 cut(s) 267, 395
MunI CAATTG 1 cut(s) 480
MvaI CCWGG 2 cut(s) 267, 395
MwoI GCNNNNNNNGC 1 cut(s) 143
NarI GGCGCC 1 cut(s) 207
NcoI CCATGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 1003
NdeII GATC 4 cut(s) 343, 673, 988, 1132
NlaIII CATG 4 cut(s) 142, 680, 803, 1133
NlaIV GGNNCC 4 cut(s) 208, 462, 853, 1122
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 334
NspV TTCGAA 1 cut(s) 583
PagI TCATGA 1 cut(s) 676
PdmI GAANNNNTTC 2 cut(s) 927, 1041
PfeI GAWTC 1 cut(s) 887
PkrI GCNGC 2 cut(s) 7, 670
PleI GAGTC 1 cut(s) 732
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 732
PpuMI RGGWCCY 1 cut(s) 1015
Psp1406I AACGTT 1 cut(s) 925
Psp5II RGGWCCY 1 cut(s) 1015
Psp6I CCWGG 2 cut(s) 265, 393
PspEI GGTNACC 1 cut(s) 334
PspGI CCWGG 2 cut(s) 265, 393
PspN4I GGNNCC 4 cut(s) 208, 462, 853, 1122
PspPI GGNCC 3 cut(s) 145, 460, 1015
PspPPI RGGWCCY 1 cut(s) 1015
PstI CTGCAG 1 cut(s) 673
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 544, 603
RsaNI GTAC 2 cut(s) 543, 602
RseI CAYNNNNRTG 2 cut(s) 556, 915
SaqAI TTAA 4 cut(s) 26, 387, 761, 984
SatI GCNGC 2 cut(s) 6, 669
Sau3AI GATC 4 cut(s) 343, 673, 988, 1132
Sau96I GGNCC 3 cut(s) 145, 460, 1015
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 2 cut(s) 267, 395
SduI GDGCHC 2 cut(s) 187, 879
SfaNI GCATC 2 cut(s) 1015, 1095
SfcI CTRYAG 2 cut(s) 568, 669
SfiI GGCCNNNNNGGCC 1 cut(s) 143
SfoI GGCGCC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 583
SinI GGWCC 2 cut(s) 460, 1015
SmiMI CAYNNNNRTG 2 cut(s) 556, 915
SmlI CTYRAG 1 cut(s) 970
SmoI CTYRAG 1 cut(s) 970
Sse9I AATT 7 cut(s) 366, 480, 586, 705, 830, 1083, 1097
SsiI CCGC 2 cut(s) 5, 158
SspDI GGCGCC 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 265, 393
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 7 cut(s) 182, 233, 262, 314, 565, 593, 1164
TaiI ACGT 3 cut(s) 443, 715, 928
TaqI TCGA 3 cut(s) 583, 727, 1135
TaqII GACCGA 1 cut(s) 448
TasI AATT 7 cut(s) 366, 480, 586, 705, 830, 1083, 1097
TatI WGTACW 2 cut(s) 542, 601
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 4 cut(s) 26, 387, 761, 984
Tru9I TTAA 4 cut(s) 26, 387, 761, 984
TscAI CASTG 3 cut(s) 319, 513, 1167
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 5 cut(s) 210, 483, 756, 843, 1020
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 3 cut(s) 319, 513, 1167
VneI GTGCAC 1 cut(s) 875
VpaK11BI GGWCC 2 cut(s) 460, 1015
XapI RAATTY 3 cut(s) 366, 830, 1097
XmiI GTMKAC 2 cut(s) 567, 816
XmnI GAANNNNTTC 2 cut(s) 927, 1041
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.