Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

43078915 .. 43083671

Gene Structure 4757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G526100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCTCAGTATGCTCCAACCTTAAACCCTCCCAAGACCCTCATCCCCAAGCTCCCAAACCCCAACCCTTCTTTCTCTTCCATCTCAACCTTCAGAACCCCAAAACCCAAATCCAAAAACTTCTCAACAATCTCCATGTCAGTGACGGCGGGCCAAAATCAACAGCAGCACCAGAAACCACCGTCCTTAGACGTTCTGATCAACAGTGCTCGCAAGGAAGAGGTAATTGGTGCTATCAAGAATTCGTCGTCTCACTGCCTCTCCGAAACCAACCTGCATCTCACAGTTCCCGGCCTCAAATCCAAAACTAGAGGCAAGGTTAGAGATGTTTATGACAGTGGGGATTATCTAGTTATGGTCACCACGGATAGGCAAAGTGCATTTGACAGAATTCTTGCTTCCATTCCTTTCAAAGGCCAGGTTCTCAATGAGACAAGTTTGTGGTGGTTTGACAAAACTCAACACATAACTTCAAACGCAGTTGTTTTGGCTCCAGATGAAAATGTAACAATTGCAAAGAAATGTTCTGTTTTTCCTGTTGAATTTGTGGTCAGAGGTTTTGTGACGGGAAGTACTGATACGTCACTATGGACAGTCTACAATAATGGTGTTCGGAATTACTGTGGCAATGCACTCCCAGATGGCTTGGCAAAAAGCCAAAAGCTTCCTGCAAATATACTCACACCAACAACTAAGGCGGCAGATCATGACGTTCCTGTTACCCCAGATGAGATTGTTGAATGTGGACTAATGACTCAAGCCGAGTATGATGAAGTAAGTAGGAAAACATTAAGCTTGTTCGAGTATGGACAGCGCGTGGCTCTGGAACATGGCTTGATATTGGTAGACACAAAATATGAATTTGGAAAGGGCAAAGATGGTTCCATTCTTTTGATTGATGAGGTGCATACACCTGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAGCGGTTTAAGAATGGCCTTGAACCTGAAAATGTTGATAAAGAGTTCTTGAGGTTGTGGTTCAAAGATCATTGCAATCCTTATGAAGATGAGGTCCTCCCTGATGCTCCTGAGGAACTCGTTCGTGAGCTATCTTGGCGATATATTTTCTTGTATGAGACAATAACAAAATCAGAATTCAAGCTGCCCTCAACAGAGGAGCCAATACATGATCGGATATCTCGAAATGTTGCACGGGCGTTATCATCTCTTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

403

Amino Acids

45.23

Weight (kDa)

5.98

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	955
AccI	GTMKAC	2 cut(s)	597, 846
AccII	CGCG	1 cut(s)	816
AciI	CCGC	3 cut(s)	149, 698, 955
AcsI	RAATTY	5 cut(s)	241, 390, 542, 860, 1127
AcuI	CTGAAG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	2 cut(s)	369, 413
AgsI	TTSAA	8 cut(s)	412, 474, 542, 740, 921, 974, 1015, 1132
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 210, 242
AluBI	AGCT	5 cut(s)	52, 664, 795, 1081, 1135
AluI	AGCT	5 cut(s)	52, 664, 795, 1081, 1135
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	3 cut(s)	255, 425, 1103
AoxI	GGCC	4 cut(s)	151, 292, 415, 967
ApeKI	GCWGC	2 cut(s)	166, 1135
ApoI	RAATTY	5 cut(s)	241, 390, 542, 860, 1127
Asp700I	GAANNNNTTC	1 cut(s)	1071
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	2 cut(s)	151, 1045
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	1045
AxyI	CCTNAGG	1 cut(s)	1062
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	178, 1122
BccI	CCATC	3 cut(s)	89, 635, 872
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	3 cut(s)	255, 425, 1103
BfaI	CTAG	2 cut(s)	309, 350
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	167, 699, 1136
BlsI	GCNGC	3 cut(s)	168, 700, 1137
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	291, 419
Bme18I	GGWCC	1 cut(s)	1045
BmgT120I	GGNCC	2 cut(s)	151, 1045
BmiI	GGNNCC	3 cut(s)	492, 883, 1152
BmrFI	CCNGG	2 cut(s)	291, 419
BmsI	GCATC	2 cut(s)	286, 1045
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	741, 1021
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	1206
BsaJI	CCNNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 413
Bse21I	CCTNAGG	1 cut(s)	1062
Bse3DI	GCAATG	2 cut(s)	634, 1021
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	369, 413
BseMI	GCAATG	2 cut(s)	634, 1021
BseMII	CTCAG	2 cut(s)	20, 1053
BseRI	GAGGAG	2 cut(s)	965, 1163
BseXI	GCAGC	2 cut(s)	178, 1122
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	4 cut(s)	153, 294, 417, 969
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	369, 413
BsmAI	GTCTC	3 cut(s)	255, 425, 1103
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	4 cut(s)	153, 294, 417, 969
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	198, 703, 1018, 1162
BspACI	CCGC	3 cut(s)	149, 698, 955
BspANI	GGCC	4 cut(s)	153, 294, 417, 969
BspCNI	CTCAG	2 cut(s)	19, 1054
BspFNI	CGCG	1 cut(s)	816
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	492, 883, 1152
BspMI	ACCTGC	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	955
BsrDI	GCAATG	2 cut(s)	634, 1021
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	4 cut(s)	198, 703, 1018, 1162
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	6 cut(s)	183, 206, 286, 338, 595, 623
Bst6I	CTCTTC	2 cut(s)	82, 213
BstBAI	YACGTR	1 cut(s)	1206
BstC8I	GCNNGC	2 cut(s)	151, 211
BstDEI	CTNAG	4 cut(s)	6, 187, 693, 1062
BstDSI	CCRYGG	1 cut(s)	363
BstEII	GGTNACC	1 cut(s)	358
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	4 cut(s)	201, 706, 1021, 1165
BstMAI	GTCTC	3 cut(s)	255, 425, 1103
BstMBI	GATC	4 cut(s)	198, 703, 1018, 1162
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 1087
BstNI	CCWGG	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	289, 417
BstSNI	TACGTA	1 cut(s)	1206
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	178, 1122
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuRI	GGCC	4 cut(s)	153, 294, 417, 969
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	4 cut(s)	147, 211, 253, 343
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	151, 211
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	816
Cfr13I	GGNCC	2 cut(s)	151, 1045
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	4 cut(s)	136, 707, 830, 1160
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	4 cut(s)	6, 187, 693, 1062
DpnI	GATC	4 cut(s)	200, 705, 1020, 1164
DpnII	GATC	4 cut(s)	198, 703, 1018, 1162
Eam1104I	CTCTTC	2 cut(s)	82, 213
EarI	CTCTTC	2 cut(s)	82, 213
Eco105I	TACGTA	1 cut(s)	1206
Eco32I	GATATC	1 cut(s)	1170
Eco47I	GGWCC	1 cut(s)	1045
Eco57I	CTGAAG	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	1062
Eco91I	GGTNACC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	1045
EcoO65I	GGTNACC	1 cut(s)	358
EcoRI	GAATTC	3 cut(s)	241, 390, 1127
EcoRII	CCWGG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	1170
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	4 cut(s)	139, 710, 833, 1163
FatI	CATG	4 cut(s)	135, 706, 829, 1159
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	2 cut(s)	597, 846
Fnu4HI	GCNGC	3 cut(s)	167, 699, 1136
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	167, 699, 1136
FspBI	CTAG	2 cut(s)	309, 350
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	3 cut(s)	167, 699, 1136
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	153, 294, 417, 969
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	4 cut(s)	139, 710, 833, 1163
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HindIII	AAGCTT	2 cut(s)	662, 793
HinfI	GANTC	2 cut(s)	754, 917
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	3 cut(s)	598, 746, 847
Hpy188I	TCNGA	7 cut(s)	95, 198, 265, 554, 615, 1126, 1167
Hpy188III	TCNNGA	8 cut(s)	238, 494, 707, 824, 1000, 1061, 1076, 1173
Hpy8I	GTNNAC	3 cut(s)	598, 746, 847
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	78, 100
HpyCH4III	ACNGT	6 cut(s)	183, 206, 286, 338, 595, 623
HpyCH4IV	ACGT	4 cut(s)	192, 581, 711, 1205
HpyCH4V	TGCA	9 cut(s)	277, 380, 515, 632, 671, 907, 938, 1026, 1184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 1087
HpyF3I	CTNAG	4 cut(s)	6, 187, 693, 1062
HpySE526I	ACGT	4 cut(s)	192, 581, 711, 1205
Hsp92II	CATG	4 cut(s)	139, 710, 833, 1163
HspAI	GCGC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	4 cut(s)	198, 703, 1018, 1162
LmnI	GCTCC	6 cut(s)	19, 57, 496, 952, 1063, 1150
Lsp1109I	GCAGC	2 cut(s)	178, 1122
LweI	GCATC	2 cut(s)	286, 1045
MaeI	CTAG	2 cut(s)	309, 350
MaeII	ACGT	4 cut(s)	192, 581, 711, 1205
MaeIII	GTNAC	6 cut(s)	142, 358, 505, 562, 582, 718
MalI	GATC	4 cut(s)	200, 705, 1020, 1164
MbiI	CCGCTC	1 cut(s)	955
MboI	GATC	4 cut(s)	198, 703, 1018, 1162
MboII	GAAGA	3 cut(s)	69, 230, 1049
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	225, 241, 390, 510, 542, 616, 860, 1127
MlyI	GAGTC	1 cut(s)	748
MmeI	TCCRAC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	1071
MseI	TTAA	3 cut(s)	23, 791, 960
MslI	CAYNNNNRTG	2 cut(s)	140, 945
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	291, 419
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	2 cut(s)	11, 1087
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	198, 703, 1018, 1162
NlaIII	CATG	4 cut(s)	139, 710, 833, 1163
NlaIV	GGNNCC	3 cut(s)	492, 883, 1152
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	4 cut(s)	142, 358, 562, 582
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	1171
PdmI	GAANNNNTTC	1 cut(s)	1071
PfeI	GAWTC	1 cut(s)	917
PkrI	GCNGC	3 cut(s)	168, 700, 1137
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
Ppu21I	YACGTR	1 cut(s)	1206
PpuMI	RGGWCCY	1 cut(s)	1045
Psp5II	RGGWCCY	1 cut(s)	1045
Psp6I	CCWGG	1 cut(s)	417
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	492, 883, 1152
PspPI	GGNCC	2 cut(s)	151, 1045
PspPPI	RGGWCCY	1 cut(s)	1045
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
RseI	CAYNNNNRTG	2 cut(s)	140, 945
SaqAI	TTAA	3 cut(s)	23, 791, 960
SatI	GCNGC	3 cut(s)	167, 699, 1136
Sau3AI	GATC	4 cut(s)	198, 703, 1018, 1162
Sau96I	GGNCC	2 cut(s)	151, 1045
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	1 cut(s)	748
ScrFI	CCNGG	2 cut(s)	291, 419
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	286, 1045
SinI	GGWCC	1 cut(s)	1045
SmiMI	CAYNNNNRTG	2 cut(s)	140, 945
SmlI	CTYRAG	2 cut(s)	756, 1000
SmoI	CTYRAG	2 cut(s)	756, 1000
SnaBI	TACGTA	1 cut(s)	1206
Sse9I	AATT	8 cut(s)	225, 241, 390, 510, 542, 616, 860, 1127
SsiI	CCGC	3 cut(s)	149, 698, 955
SspMI	CTAG	2 cut(s)	309, 350
StyD4I	CCNGG	2 cut(s)	289, 417
TaaI	ACNGT	6 cut(s)	183, 206, 286, 338, 595, 623
TaiI	ACGT	4 cut(s)	195, 584, 714, 1208
TaqI	TCGA	2 cut(s)	801, 1174
TasI	AATT	8 cut(s)	225, 241, 390, 510, 542, 616, 860, 1127
TatI	WGTACW	1 cut(s)	572
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	917
Tru1I	TTAA	3 cut(s)	23, 791, 960
Tru9I	TTAA	3 cut(s)	23, 791, 960
TscAI	CASTG	4 cut(s)	147, 211, 260, 343
TseFI	GTSAC	4 cut(s)	142, 358, 562, 582
TseI	GCWGC	2 cut(s)	166, 1135
Tsp45I	GTSAC	4 cut(s)	142, 358, 562, 582
TspDTI	ATGAA	4 cut(s)	513, 786, 873, 1050
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	4 cut(s)	147, 211, 260, 343
VpaK11BI	GGWCC	1 cut(s)	1045
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	5 cut(s)	241, 390, 542, 860, 1127
XmiI	GTMKAC	2 cut(s)	597, 846
XmnI	GAANNNNTTC	1 cut(s)	1071
XspI	CTAG	2 cut(s)	309, 350
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.