Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

11452988 .. 11456040

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATCCCATGAAGAGGCGGTTACCCACTGGAGAATGGAGATCAATTGTTGATATTGCCATTGCTATGTATAATGCACACAAGGGAAGGAAAGGCCGCAGTTCAGTTTTGTGGAAAAATTTATCGGGTATTCCTCCCCAACCTAATGCTAAGGACTGTGGGTACTTTGTGATGCGCTACATGAGAGATATAATTGAGGATAAGGATTTTACATTTGTCAACAAGAAGGGATTGATGATGCAACCAAAAAAGCTAAAGCTTCCAGAGTTTAGCTCCAAATTTACTAGAAAATCTGTGGGACTAGTTGAAAAACTGGATGGTGTTATGGTGCCGTATAATCCTCCACCGGCTGATTCTGGTGCTACTCCACACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

125

Amino Acids

14.23

Weight (kDa)

9.91

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	33 - 76	8.6e-06	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	2 cut(s)	19, 97
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	118, 278
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	308
AhlI	ACTAGT	1 cut(s)	301
AluBI	AGCT	3 cut(s)	253, 259, 273
AluI	AGCT	3 cut(s)	253, 259, 273
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	118, 278
AspLEI	GCGC	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	328
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	316
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	2 cut(s)	285, 302
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	6, 330
BmsI	GCATC	2 cut(s)	162, 228
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	34, 318
Bse3DI	GCAATG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	34, 318
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	4, 41
BspACI	CCGC	2 cut(s)	19, 97
BspANI	GGCC	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	6, 330
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	34, 318
BssAI	RCCGGY	1 cut(s)	346
BssMI	GATC	2 cut(s)	4, 41
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	2 cut(s)	7, 44
BstMBI	GATC	2 cut(s)	4, 41
BstPI	GGTNACC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	10, 181
CviJI	RGCY	5 cut(s)	96, 253, 259, 273, 350
CviKI_1	RGCY	5 cut(s)	96, 253, 259, 273, 350
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	6, 43
DpnII	GATC	2 cut(s)	4, 41
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	21
EcoO65I	GGTNACC	1 cut(s)	21
FaeI	CATG	2 cut(s)	13, 184
FaiI	YATR	7 cut(s)	11, 68, 72, 182, 191, 326, 336
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	2 cut(s)	9, 180
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	2 cut(s)	285, 302
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	13, 184
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	81, 220
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	77, 241
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	13, 184
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	4, 41
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	5 cut(s)	15, 276, 299, 342, 360
LweI	GCATC	2 cut(s)	162, 228
MaeI	CTAG	2 cut(s)	285, 302
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	2 cut(s)	6, 43
MboI	GATC	2 cut(s)	4, 41
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	45, 118, 192, 278
MnlI	CCTC	4 cut(s)	9, 144, 190, 351
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	45
NdeII	GATC	2 cut(s)	4, 41
NlaIII	CATG	2 cut(s)	13, 184
NlaIV	GGNNCC	2 cut(s)	6, 330
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	98
PspEI	GGTNACC	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	6, 330
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	65
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	4, 41
SetI	ASST	4 cut(s)	145, 255, 261, 275
SfaNI	GCATC	2 cut(s)	162, 228
SmiMI	CAYNNNNRTG	1 cut(s)	65
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	4 cut(s)	45, 118, 192, 278
SsiI	CCGC	2 cut(s)	19, 97
SspMI	CTAG	2 cut(s)	285, 302
TaaI	ACNGT	1 cut(s)	158
TasI	AATT	4 cut(s)	45, 118, 192, 278
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	353
TscAI	CASTG	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	118, 278
XspI	CTAG	2 cut(s)	285, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.