Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

36503088 .. 36520301

Gene Structure 17214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGACTACCTTGAGGTGCCTTAATTGTAAGCTCATTAGTGTTAGGGATGTTTATGACAGTGGTGATTATCTAGTTATGGTCACCACAGACAGGCAGAGTTCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTAATGAAACAAGTTTATGGTGGTTTGACAAAACTCGACATATAACATCAAATGCAGTTGTATCGGTCCCAGATGAAAATGTAACAATTGCAAAGAAATGTTCTGTTTTTCCGGTGGAGGTTGTGGTCAGAGGTTTTGTGATGGGAAGTACTCATACATCATTATGGACAGTCTATAGAAGTGGCATAAAGAGCCAAAAGCTTCCTGCTAGTATACTCACACCAACAACTAAGGCTGCAGATCATGACGTTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGTCAACCGGATTATGCTGAAGTCAGTAGGAAAGCATTAAGCTTGTTCGAGTATGGACATCGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTGTGAATTTGGAAAGCGACACGATGATTCCATACATTTTATTGATGAGGTGCATACAACAATAACCAAAGCTTTTTGTCAATGCTTCTTTCAACAAGATCATGCCAAACAACTAAATAGTATTGTTGAGATTTCATCCACAGATGCAACAATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

231

Amino Acids

25.96

Weight (kDa)

6.12

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	14 - 198	2.1e-46	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	2 cut(s)	358, 528
AcsI	RAATTY	2 cut(s)	111, 542
AcuI	CTGAAG	1 cut(s)	474
AdeI	CACNNNGTG	1 cut(s)	537
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	90, 134
AgsI	TTSAA	2 cut(s)	422, 629
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	4 cut(s)	31, 346, 477, 608
AluI	AGCT	4 cut(s)	31, 346, 477, 608
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	111, 542
AspS9I	GGNCC	2 cut(s)	142, 211
AsuHPI	GGTGA	2 cut(s)	73, 74
AvaII	GGWCC	2 cut(s)	142, 211
BanI	GGYRCC	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	2 cut(s)	71, 354
BfmI	CTRYAG	2 cut(s)	319, 381
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	142, 211
BmgT120I	GGNCC	2 cut(s)	142, 211
BmiI	GGNNCC	2 cut(s)	17, 213
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	670
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	31
BsaWI	WCCGGW	2 cut(s)	256, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 134
BseBI	CCWGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	52, 671
BseLI	CCNNNNNNNGG	2 cut(s)	90, 134
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	257, 443
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	90, 134
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	385, 634
BspANI	GGCC	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	17, 213
BspMAI	CTGCAG	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	15
BssMI	GATC	2 cut(s)	385, 634
BssNAI	GTATAC	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	59, 316
BstDEI	CTNAG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	52, 671
BstKTI	GATC	2 cut(s)	388, 637
BstMBI	GATC	2 cut(s)	385, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	319, 381
BstV1I	GCAGC	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	52, 671
BtsIMutI	CAGTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	142, 211
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	3 cut(s)	389, 512, 638
CviJI	RGCY	8 cut(s)	31, 138, 339, 346, 380, 477, 503, 608
CviKI_1	RGCY	8 cut(s)	31, 138, 339, 346, 380, 477, 503, 608
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	2 cut(s)	387, 636
DpnII	GATC	2 cut(s)	385, 634
DraI	TTTAAA	1 cut(s)	133
DraIII	CACNNNGTG	1 cut(s)	537
DrdI	GACNNNNNNGTC	1 cut(s)	435
DseDI	GACNNNNNNGTC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	142, 211
Eco57I	CTGAAG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	392, 515, 641
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	388, 511, 637
FblI	GTMKAC	2 cut(s)	358, 528
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	59, 658
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	2 cut(s)	71, 354
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	257, 443
Hin1II	CATG	3 cut(s)	392, 515, 641
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HindIII	AAGCTT	3 cut(s)	344, 475, 606
HinfI	GANTC	2 cut(s)	436, 563
HpaII	CCGG	2 cut(s)	257, 443
HphI	GGTGA	2 cut(s)	73, 74
Hpy166II	GTNNAC	4 cut(s)	359, 428, 440, 529
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	2 cut(s)	389, 407
Hpy8I	GTNNAC	4 cut(s)	359, 428, 440, 529
HpyCH4III	ACNGT	2 cut(s)	59, 316
HpyCH4IV	ACGT	2 cut(s)	393, 424
HpyCH4V	TGCA	5 cut(s)	200, 236, 383, 589, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	393, 424
Hsp92II	CATG	3 cut(s)	392, 515, 641
Kzo9I	GATC	2 cut(s)	385, 634
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	9 cut(s)	76, 125, 152, 228, 270, 363, 411, 420, 456
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	71, 354
MaeII	ACGT	2 cut(s)	393, 424
MaeIII	GTNAC	3 cut(s)	79, 226, 400
MalI	GATC	2 cut(s)	387, 636
MboI	GATC	2 cut(s)	385, 634
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	5 cut(s)	22, 111, 231, 417, 542
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	4 cut(s)	6, 256, 269, 577
MseI	TTAA	4 cut(s)	21, 132, 147, 473
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	2 cut(s)	257, 443
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	2 cut(s)	385, 634
NlaIII	CATG	3 cut(s)	392, 515, 641
NlaIV	GGNNCC	2 cut(s)	17, 213
NmuCI	GTSAC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	17, 213
PspPI	GGNCC	2 cut(s)	142, 211
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	21, 132, 147, 473
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	385, 634
Sau96I	GGNCC	2 cut(s)	142, 211
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	2 cut(s)	319, 381
SinI	GGWCC	2 cut(s)	142, 211
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	5 cut(s)	22, 111, 231, 417, 542
SspMI	CTAG	2 cut(s)	71, 354
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	59, 316
TaiI	ACGT	2 cut(s)	396, 427
TaqI	TCGA	2 cut(s)	181, 483
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	5 cut(s)	22, 111, 231, 417, 542
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	4 cut(s)	21, 132, 147, 473
Tru9I	TTAA	4 cut(s)	21, 132, 147, 473
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	4 cut(s)	90, 165, 234, 660
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	142, 211
XapI	RAATTY	2 cut(s)	111, 542
XmiI	GTMKAC	2 cut(s)	358, 528
XspI	CTAG	2 cut(s)	71, 354
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.