Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

7402477 .. 7405674

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCTCAGTGTGTGAGGTCAACTCTAAATCCTGTGAGAACACCCCAGAGCTTTACTAGGAAAGCGTATGTGAAAAGCCCAGCTTTTGCATCAGTCTCGTTCCTTCGAGCAGTACCGGAGTTCAACAAATACCCAAAACCTTGTTCATTGGTTATGTCTTGCCAGGGCAAGGCTCAAAACCAGCAGGAGGAGCGACCACAACTGTCTCTTGACGATTTAGTCACGAGTAACCGGAAAGGGGAGGTTCTTGGCACAATCAAAGACTCGCTTTCTAATTGTCTCTCTGAGACTAATCTTCTTGCCACTGTTCCTGGTCTGAAATCTAGAATCAAGGGAAAGGTCAGAGATATTTATGATGCTGGTGATTATCTGGTTCTTATTACAACTGATCGGTTGAGTGCATTCGACAGAAACCTTGCTTCAATTCCCTTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGTTCAATAACACACAGCACATAACTCCAAATGCAATCGTTTCATCTCCTGATAGAAATGTTGTTATCGCAAAGAAATGCTCGGTTTTTCCCATAGAGTTTGTGGTTAGAGGATATGTGACTGGAAGTACTGACACATCTTTATGGACGGTGTACAATAAAGGTGTTCGGAACTACTGTGGGAATGAGCTCTCAGATGGATTAGTTAAAAACCAGAAGCTTCCAGCTAATATACTTACACCAACAACTAAGGCTGCGGATCATGATGTGCCCATCTCTCCAAATGAGATAGTTGAAGGTGGATTCATGACTCAAGCTGAATTTGATGAAGCAAGTATGAAAGCTTTGAGCTTGTTTGAGTTTGGGCAGGGGGTGGCCAAGAAACATGGACTGATATTGGTGGACACAAAGTATGAGTTTGGAAGAAGTAGTGATGGCTCAATCTTATTGATTGATGAGATTCATACACCCGATTCCAGCAGATACTGGCTTGCGGGTTCATATGAAGAGCGCTTCCAAAAAGGCCTGGAGCCTGAAAATGTTGATAAGGAGTTCCTAAGATTGTGGTTCAAAGAGAACTGCAATCCGTATGAGGACGAGGTCCTGCCTGCTGCTCCAGCAGAACTCGTGACTGAATTAGCTTGGCGGTACATTTTCTTGTATGAAACTATCACTGGATCAAGAATTGACATTATTCCGACTCAGGAACCAATACATGACCGAATCTCAAGGAACACAAGCCAAGCACTTTCATCTCTCCGTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

411

Amino Acids

46.06

Weight (kDa)

6.06

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAICAR_synt	PF01259	110 - 356	8e-69	SAICAR synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AciI	CCGC	3 cut(s)	722, 959, 1111
AclWI	GGATC	2 cut(s)	732, 1150
AcoI	YGGCCR	1 cut(s)	840
AcsI	RAATTY	1 cut(s)	785
AfaI	GTAC	4 cut(s)	114, 595, 620, 1115
AfeI	AGCGCT	1 cut(s)	977
AfiI	CCNNNNNNNGG	4 cut(s)	169, 187, 238, 434
AgsI	TTSAA	6 cut(s)	124, 423, 433, 472, 761, 1036
AjnI	CCWGG	4 cut(s)	162, 310, 438, 990
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AluBI	AGCT	9 cut(s)	51, 83, 655, 685, 692, 782, 809, 816, 1106
AluI	AGCT	9 cut(s)	51, 83, 655, 685, 692, 782, 809, 816, 1106
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	5 cut(s)	100, 210, 281, 284, 446
AlwI	GGATC	2 cut(s)	732, 1150
AlwNI	CAGNNNCTG	1 cut(s)	951
Aor51HI	AGCGCT	1 cut(s)	977
AoxI	GGCC	3 cut(s)	436, 840, 988
ApeKI	GCWGC	2 cut(s)	719, 1076
ApoI	RAATTY	1 cut(s)	785
AspLEI	GCGC	1 cut(s)	978
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	1066
BaeGI	GKGCMC	1 cut(s)	738
BalI	TGGCCA	1 cut(s)	842
BanII	GRGCYC	1 cut(s)	657
BauI	CACGAG	2 cut(s)	223, 1091
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	706, 1063
BccI	CCATC	3 cut(s)	656, 746, 893
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	4 cut(s)	164, 312, 440, 992
BcoDI	GTCTC	5 cut(s)	100, 210, 281, 284, 446
BfaI	CTAG	2 cut(s)	57, 324
BfoI	RGCGCY	1 cut(s)	979
BisI	GCNGC	2 cut(s)	720, 1077
BlsI	GCNGC	2 cut(s)	721, 1078
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	4 cut(s)	164, 312, 440, 992
Bme18I	GGWCC	1 cut(s)	1066
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	2 cut(s)	996, 1173
BmrFI	CCNGG	4 cut(s)	164, 312, 440, 992
BmsI	GCATC	2 cut(s)	98, 346
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	2 cut(s)	1013, 1065
BpuEI	CTTGAG	2 cut(s)	762, 1177
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	2 cut(s)	115, 231
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 187, 238, 434
Bse1I	ACTGG	3 cut(s)	592, 956, 1144
BseBI	CCWGG	4 cut(s)	164, 312, 440, 992
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	4 cut(s)	169, 187, 238, 434
BseMII	CTCAG	4 cut(s)	20, 276, 672, 1181
BseNI	ACTGG	3 cut(s)	592, 956, 1144
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	2 cut(s)	706, 1063
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	3 cut(s)	438, 842, 990
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	2 cut(s)	116, 232
BslI	CCNNNNNNNGG	4 cut(s)	169, 187, 238, 434
BsmAI	GTCTC	5 cut(s)	100, 210, 281, 284, 446
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	438, 842, 990
Bsp1286I	GDGCHC	2 cut(s)	657, 738
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	388, 724, 1142
BspACI	CCGC	3 cut(s)	722, 959, 1111
BspANI	GGCC	3 cut(s)	438, 842, 990
BspCNI	CTCAG	4 cut(s)	19, 277, 671, 1180
BspHI	TCATGA	2 cut(s)	727, 771
BspLI	GGNNCC	2 cut(s)	996, 1173
BspPI	GGATC	2 cut(s)	732, 1150
BspQI	GCTCTTC	1 cut(s)	966
BsrGI	TGTACA	1 cut(s)	618
BsrI	ACTGG	3 cut(s)	592, 956, 1144
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	388, 724, 1142
BssSI	CACGAG	2 cut(s)	223, 1091
Bst2BI	CACGAG	2 cut(s)	223, 1091
Bst2UI	CCWGG	4 cut(s)	164, 312, 440, 992
Bst4CI	ACNGT	4 cut(s)	204, 307, 616, 644
Bst6I	CTCTTC	1 cut(s)	966
BstAUI	TGTACA	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	957, 1074
BstDEI	CTNAG	6 cut(s)	6, 285, 658, 714, 1022, 1167
BstH2I	RGCGCY	1 cut(s)	979
BstHHI	GCGC	1 cut(s)	978
BstKTI	GATC	3 cut(s)	391, 727, 1145
BstMAI	GTCTC	5 cut(s)	100, 210, 281, 284, 446
BstMBI	GATC	3 cut(s)	388, 724, 1142
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 1082
BstNI	CCWGG	4 cut(s)	164, 312, 440, 992
BstSCI	CCNGG	4 cut(s)	162, 310, 438, 990
BstSLI	GKGCMC	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	706, 1063
BsuRI	GGCC	3 cut(s)	438, 842, 990
BtsIMutI	CAGTG	3 cut(s)	14, 303, 1137
Cac8I	GCNNGC	2 cut(s)	957, 1074
CaiI	CAGNNNCTG	1 cut(s)	951
CciI	TCATGA	2 cut(s)	727, 771
CfoI	GCGC	1 cut(s)	978
Cfr13I	GGNCC	1 cut(s)	1066
Csp6I	GTAC	4 cut(s)	113, 594, 619, 1114
CviAII	CATG	4 cut(s)	728, 772, 851, 1181
CviQI	GTAC	4 cut(s)	113, 594, 619, 1114
DdeI	CTNAG	6 cut(s)	6, 285, 658, 714, 1022, 1167
DpnI	GATC	3 cut(s)	390, 726, 1144
DpnII	GATC	3 cut(s)	388, 724, 1142
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	840
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
Ecl136II	GAGCTC	1 cut(s)	655
Eco147I	AGGCCT	1 cut(s)	990
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	1066
Eco47III	AGCGCT	1 cut(s)	977
Eco53kI	GAGCTC	1 cut(s)	655
EcoICRI	GAGCTC	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoRII	CCWGG	4 cut(s)	162, 310, 438, 990
EcoT38I	GRGCYC	1 cut(s)	657
FaeI	CATG	4 cut(s)	731, 775, 854, 1184
FalI	AAGNNNNNCTT	4 cut(s)	67, 99, 252, 284
FatI	CATG	4 cut(s)	727, 771, 850, 1180
FauI	CCCGC	1 cut(s)	952
FauNDI	CATATG	1 cut(s)	967
Fnu4HI	GCNGC	2 cut(s)	720, 1077
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	2 cut(s)	720, 1077
FspBI	CTAG	2 cut(s)	57, 324
GlaI	GCGC	1 cut(s)	977
GluI	GCNGC	2 cut(s)	720, 1077
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	2 cut(s)	1013, 1065
HaeII	RGCGCY	1 cut(s)	979
HaeIII	GGCC	3 cut(s)	438, 842, 990
HapII	CCGG	2 cut(s)	116, 232
HhaI	GCGC	1 cut(s)	978
Hin1II	CATG	4 cut(s)	731, 775, 854, 1184
Hin6I	GCGC	1 cut(s)	976
HinP1I	GCGC	1 cut(s)	976
HincII	GTYRAC	2 cut(s)	21, 1229
HindII	GTYRAC	2 cut(s)	21, 1229
HindIII	AAGCTT	2 cut(s)	683, 807
HinfI	GANTC	8 cut(s)	263, 327, 768, 775, 925, 938, 1165, 1188
HpaII	CCGG	2 cut(s)	116, 232
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	4 cut(s)	21, 619, 868, 1229
Hpy188I	TCNGA	6 cut(s)	286, 318, 344, 636, 661, 1164
Hpy188III	TCNNGA	9 cut(s)	209, 223, 324, 515, 728, 772, 1093, 1146, 1169
Hpy8I	GTNNAC	4 cut(s)	21, 619, 868, 1229
HpyAV	CCTTC	3 cut(s)	113, 439, 755
HpyCH4III	ACNGT	4 cut(s)	204, 307, 616, 644
HpyCH4V	TGCA	4 cut(s)	89, 401, 500, 1047
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 1082
HpyF3I	CTNAG	6 cut(s)	6, 285, 658, 714, 1022, 1167
Hsp92II	CATG	4 cut(s)	731, 775, 854, 1184
HspAI	GCGC	1 cut(s)	976
Kzo9I	GATC	3 cut(s)	388, 724, 1142
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	3 cut(s)	190, 994, 1084
Lsp1109I	GCAGC	2 cut(s)	706, 1063
LweI	GCATC	2 cut(s)	98, 346
MaeI	CTAG	2 cut(s)	57, 324
MaeIII	GTNAC	4 cut(s)	220, 227, 583, 1093
MalI	GATC	3 cut(s)	390, 726, 1144
MboI	GATC	3 cut(s)	388, 724, 1142
MboII	GAAGA	3 cut(s)	287, 900, 983
MhlI	GDGCHC	2 cut(s)	657, 738
MlsI	TGGCCA	1 cut(s)	842
MluCI	AATT	5 cut(s)	274, 423, 785, 1100, 1149
MluNI	TGGCCA	1 cut(s)	842
MlyI	GAGTC	3 cut(s)	257, 769, 1159
MmeI	TCCRAC	1 cut(s)	1187
MnlI	CCTC	6 cut(s)	9, 181, 235, 569, 1051, 1057
Mox20I	TGGCCA	1 cut(s)	842
MscI	TGGCCA	1 cut(s)	842
MseI	TTAA	2 cut(s)	447, 672
MslI	CAYNNNNRTG	1 cut(s)	607
Msp20I	TGGCCA	1 cut(s)	842
MspI	CCGG	2 cut(s)	116, 232
MspR9I	CCNGG	4 cut(s)	164, 312, 440, 992
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	4 cut(s)	164, 312, 440, 992
MwoI	GCNNNNNNNGC	2 cut(s)	190, 1082
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	3 cut(s)	388, 724, 1142
NlaIII	CATG	4 cut(s)	731, 775, 854, 1184
NlaIV	GGNNCC	2 cut(s)	996, 1173
NmuCI	GTSAC	3 cut(s)	220, 583, 1093
PagI	TCATGA	2 cut(s)	727, 771
PceI	AGGCCT	1 cut(s)	990
PciSI	GCTCTTC	1 cut(s)	966
PctI	GAATGC	1 cut(s)	401
PfeI	GAWTC	5 cut(s)	327, 768, 925, 938, 1188
PflFI	GACNNNGTC	1 cut(s)	1064
PkrI	GCNGC	2 cut(s)	721, 1078
PleI	GAGTC	3 cut(s)	257, 769, 1159
PpsI	GAGTC	3 cut(s)	257, 769, 1159
PpuMI	RGGWCCY	1 cut(s)	1066
Psp124BI	GAGCTC	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	1066
Psp6I	CCWGG	4 cut(s)	162, 310, 438, 990
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	4 cut(s)	162, 310, 438, 990
PspN4I	GGNNCC	2 cut(s)	996, 1173
PspPI	GGNCC	1 cut(s)	1066
PspPPI	RGGWCCY	1 cut(s)	1066
PstNI	CAGNNNCTG	1 cut(s)	951
PsyI	GACNNNGTC	1 cut(s)	1064
RsaI	GTAC	4 cut(s)	114, 595, 620, 1115
RsaNI	GTAC	4 cut(s)	113, 594, 619, 1114
RseI	CAYNNNNRTG	1 cut(s)	607
SacI	GAGCTC	1 cut(s)	657
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	2 cut(s)	447, 672
SatI	GCNGC	2 cut(s)	720, 1077
Sau3AI	GATC	3 cut(s)	388, 724, 1142
Sau96I	GGNCC	1 cut(s)	1066
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	3 cut(s)	257, 769, 1159
ScrFI	CCNGG	4 cut(s)	164, 312, 440, 992
SduI	GDGCHC	2 cut(s)	657, 738
SfaNI	GCATC	2 cut(s)	98, 346
SinI	GGWCC	1 cut(s)	1066
SmiMI	CAYNNNNRTG	1 cut(s)	607
SmlI	CTYRAG	2 cut(s)	777, 1192
SmoI	CTYRAG	2 cut(s)	777, 1192
Sse9I	AATT	5 cut(s)	274, 423, 785, 1100, 1149
SseBI	AGGCCT	1 cut(s)	990
SsiI	CCGC	3 cut(s)	722, 959, 1111
SspMI	CTAG	2 cut(s)	57, 324
SstI	GAGCTC	1 cut(s)	657
StuI	AGGCCT	1 cut(s)	990
StyD4I	CCNGG	4 cut(s)	162, 310, 438, 990
TaaI	ACNGT	4 cut(s)	204, 307, 616, 644
TaqI	TCGA	2 cut(s)	106, 405
TaqII	GACCGA	1 cut(s)	1200
TasI	AATT	5 cut(s)	274, 423, 785, 1100, 1149
TatI	WGTACW	2 cut(s)	593, 618
TfiI	GAWTC	5 cut(s)	327, 768, 925, 938, 1188
Tru1I	TTAA	2 cut(s)	447, 672
Tru9I	TTAA	2 cut(s)	447, 672
TscAI	CASTG	3 cut(s)	14, 310, 1144
TseFI	GTSAC	3 cut(s)	220, 583, 1093
TseI	GCWGC	2 cut(s)	719, 1076
Tsp45I	GTSAC	3 cut(s)	220, 583, 1093
TspGWI	ACGGA	2 cut(s)	1041, 1214
TspRI	CASTG	3 cut(s)	14, 310, 1144
Tth111I	GACNNNGTC	1 cut(s)	1064
VpaK11BI	GGWCC	1 cut(s)	1066
XapI	RAATTY	1 cut(s)	785
XbaI	TCTAGA	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	2 cut(s)	57, 324
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.