Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002383

Physical Location & Seq

Genomic Coordinates Reverse (-)

33626353 .. 33630811

Gene Structure 4459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCCCAGTATACTGCAACCATAAACCCTCCCAAAGCCCTAATCCCCAAGCACTCAAATCCCGATACCTCTTTGTCTTCCTTCTCAGCATTCACAACCCCAAAACCCAAATCCATTAACTTCCCAAAATTCTCCATGTCAGTCACGGCGGCCCAAAACCAGCAGCACTGCCAGCAACCGCCGTCCTTGGAAGCTCTGATCAACGGTGCTCACAAAGAAGAGGTGCTTGGCGTTATCAAGAGTTCGTCGTCTCACTGCCTCTCCGAAACCAACCTCCACCTCACAGTTCCTGGCCTCAAATCCAAAATTAGAGGCAAGGTTAGAGATGTTTATGACAATGGCGATTATCTAGTTATGGTTACGACGGATAGGCAGAGTGCATTTGACAGAATTCTTGCTTCCATTCCCTTCAAAGGACAGGTCCTTAATGAGACAAGTTTGTGGTGGTTTGACAAAACTCAACACATAACTTCCAACGCAGTTGTTTCGGCTCCAGATGAAAATGTAACAATTGCAAAGAAATGTTCTGTTATTCCCGTTGAGTTTGTGGTCAGAGGTTTTGTGACGGGAAGTACTGATACGTCATTATGGACGGTCTACAAAAATGGTGCTCGAAATTACTGTGGCAATGTACTCCCAGATGGCTTGGTAAAAAGCCAAAAGCTTCCTGCAAATATACTCACACCGACAACTAAGGCTGCAGATCATGATGTTCCTGTAACCCCAGATGAGATAATTGAACGCGGACTAATGACTCAAGCTGAGTATGATGAAGTAAGCAGGAAAGCACTAAGCTTGTTTGAGTATGGACAGCGTGTGGCATTGGAACATGGTTTGATATTGGTAGACACAAAATATGAATTCGGAAAGGGCCAGGATGGTTCCATTCTTTTGATTGATGAGGTGCATACACCTGATTCAAGTAGATATTGGATTGCACATACTTATGAGGAGCGATTGCAGAATGGTCTTGAACCCGAAAATGTTGATAAAGAGTTCTTGAGGTTGTGGTTCAAAGATCACTGCAATCCTTACGAAGATGAGGTTCTCCCTGATGCTCCTGAGGAACTTGTTTGTGAACTAGCTTGGCGATACATTTTCCTGTACGAGACAATAACAAAATCAAAATTCAATTTGCCTTCCACAGAGGAACCAATACATGATCGGATATCACGAAATGTTGCACAGGCGTTGTCATCTCTGGCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

SAICAR_synt

Protein Analysis

404

Amino Acids

45.15

Weight (kDa)

5.68

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21110 AT3G21110 AT3G21110
fragaria_vesca	FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000 FvH4_5g36000
malus_domestica	MD00G1136500.v1.1 MD15G1379800.v1.1
prunus_persica	Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1 Prupe.1G526100_v2.0.a1
pyrus_communis	pycom08g16460 pycom15g34040
rosa_chinensis	RchiOBHm_Chr1g0327751 RchiOBHm_Chr7g0237731
rosa_laevigata	RLG00000000972 RLG00000020456 RLG00000022812 RLG00000029972
rosa_multiflora	Rmu_sc0001058.1_g000004 Rmu_sc0012726.1_g000002
rosa_roxburghii	Rroxscaffold_3G00223790 Rroxscaffold_4G00322400
rosa_rugosa	Rorug01G0070200 Rorug07G0307600
rosa_samantha	Rh1AG086700 Rh1BG069500 Rh1CG084200 Rh1DG091200 Rh3BG336600 Rh3CG333800 Rh3DG335900 Rh7AG463700 Rh7BG433800 Rh7CG480700 Rh7DG449600
rosa_wichuraiana	Rw3G026570 Rw7G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	11, 597, 846
AccII	CGCG	1 cut(s)	744
AciI	CCGC	3 cut(s)	149, 179, 744
AcsI	RAATTY	4 cut(s)	128, 390, 860, 1127
AfaI	GTAC	3 cut(s)	574, 633, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	412, 740, 921, 974, 1015, 1132
AjnI	CCWGG	2 cut(s)	289, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	5 cut(s)	194, 664, 761, 795, 1085
AluI	AGCT	5 cut(s)	194, 664, 761, 795, 1085
Alw21I	GWGCWC	2 cut(s)	211, 613
Alw26I	GTCTC	3 cut(s)	255, 425, 1103
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	4 cut(s)	3, 150, 292, 871
ApeKI	GCWGC	2 cut(s)	163, 698
ApoI	RAATTY	4 cut(s)	128, 390, 860, 1127
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
AspS9I	GGNCC	4 cut(s)	4, 151, 421, 871
AvaII	GGWCC	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	1062
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	211, 613
BbvI	GCAGC	2 cut(s)	175, 685
BccI	CCATC	2 cut(s)	635, 872
BceAI	ACGGC	2 cut(s)	162, 166
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	2 cut(s)	291, 875
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	3 cut(s)	255, 425, 1103
BfaI	CTAG	2 cut(s)	350, 1082
BfmI	CTRYAG	1 cut(s)	699
BisI	GCNGC	3 cut(s)	150, 164, 699
BlsI	GCNGC	3 cut(s)	151, 165, 700
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	291, 875
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	4 cut(s)	4, 151, 421, 871
BmiI	GGNNCC	3 cut(s)	492, 883, 1152
BmrFI	CCNGG	2 cut(s)	291, 875
BmsI	GCATC	1 cut(s)	1045
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	741, 1021
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	7
Bse21I	CCTNAGG	1 cut(s)	1062
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	2 cut(s)	291, 875
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	3 cut(s)	99, 753, 1053
BseNI	ACTGG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	965
BseXI	GCAGC	2 cut(s)	175, 685
Bsh1236I	CGCG	1 cut(s)	744
BshFI	GGCC	4 cut(s)	5, 152, 294, 873
BsiHKAI	GWGCWC	2 cut(s)	211, 613
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	3 cut(s)	255, 425, 1103
BsmBI	CGTCTC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	5, 152, 294, 873
Bsp1286I	GDGCHC	2 cut(s)	211, 613
Bsp143I	GATC	4 cut(s)	198, 703, 1018, 1162
BspACI	CCGC	3 cut(s)	149, 179, 744
BspANI	GGCC	4 cut(s)	5, 152, 294, 873
BspCNI	CTCAG	3 cut(s)	98, 754, 1054
BspFNI	CGCG	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	492, 883, 1152
BspMAI	CTGCAG	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	4 cut(s)	198, 703, 1018, 1162
BssNAI	GTATAC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	291, 875
Bst4CI	ACNGT	4 cut(s)	206, 286, 595, 623
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	5 cut(s)	85, 693, 762, 791, 1062
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	1 cut(s)	744
BstKTI	GATC	4 cut(s)	201, 706, 1021, 1165
BstMAI	GTCTC	3 cut(s)	255, 425, 1103
BstMBI	GATC	4 cut(s)	198, 703, 1018, 1162
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	291, 875
BstSCI	CCNGG	2 cut(s)	289, 873
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	2 cut(s)	175, 685
BstV2I	GAAGAC	1 cut(s)	69
BstZ17I	GTATAC	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuRI	GGCC	4 cut(s)	5, 152, 294, 873
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	3 cut(s)	166, 253, 1021
BtsIMutI	CAGTG	3 cut(s)	166, 253, 1021
Cac8I	GCNNGC	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	706
Cfr13I	GGNCC	4 cut(s)	4, 151, 421, 871
Csp6I	GTAC	3 cut(s)	573, 632, 1105
CviAII	CATG	4 cut(s)	136, 707, 830, 1160
CviQI	GTAC	3 cut(s)	573, 632, 1105
DdeI	CTNAG	5 cut(s)	85, 693, 762, 791, 1062
DpnI	GATC	4 cut(s)	200, 705, 1020, 1164
DpnII	GATC	4 cut(s)	198, 703, 1018, 1162
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	1170
Eco47I	GGWCC	1 cut(s)	421
Eco81I	CCTNAGG	1 cut(s)	1062
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRI	GAATTC	2 cut(s)	390, 860
EcoRII	CCWGG	2 cut(s)	289, 873
EcoRV	GATATC	1 cut(s)	1170
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	4 cut(s)	139, 710, 833, 1163
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	4 cut(s)	135, 706, 829, 1159
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	3 cut(s)	11, 597, 846
Fnu4HI	GCNGC	3 cut(s)	150, 164, 699
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	3 cut(s)	150, 164, 699
FspBI	CTAG	2 cut(s)	350, 1082
GluI	GCNGC	3 cut(s)	150, 164, 699
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	5, 152, 294, 873
Hin1II	CATG	4 cut(s)	139, 710, 833, 1163
HindIII	AAGCTT	2 cut(s)	662, 793
HinfI	GANTC	2 cut(s)	754, 917
Hpy166II	GTNNAC	4 cut(s)	12, 598, 847, 1079
Hpy188I	TCNGA	5 cut(s)	198, 265, 554, 866, 1167
Hpy188III	TCNNGA	8 cut(s)	62, 238, 494, 707, 971, 1000, 1061, 1173
Hpy8I	GTNNAC	4 cut(s)	12, 598, 847, 1079
Hpy99I	CGWCG	2 cut(s)	250, 367
HpyAV	CCTTC	3 cut(s)	91, 418, 1149
HpyCH4III	ACNGT	4 cut(s)	206, 286, 595, 623
HpyCH4IV	ACGT	1 cut(s)	581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	5 cut(s)	85, 693, 762, 791, 1062
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	4 cut(s)	139, 710, 833, 1163
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	4 cut(s)	198, 703, 1018, 1162
LmnI	GCTCC	3 cut(s)	496, 952, 1063
Lsp1109I	GCAGC	2 cut(s)	175, 685
LweI	GCATC	1 cut(s)	1045
MaeI	CTAG	2 cut(s)	350, 1082
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	5 cut(s)	142, 358, 505, 562, 718
MalI	GATC	4 cut(s)	200, 705, 1020, 1164
MboI	GATC	4 cut(s)	198, 703, 1018, 1162
MboII	GAAGA	3 cut(s)	69, 230, 1049
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	2 cut(s)	211, 613
MluCI	AATT	9 cut(s)	128, 306, 390, 510, 616, 735, 860, 1127, 1132
MlyI	GAGTC	1 cut(s)	748
MmeI	TCCRAC	1 cut(s)	498
MseI	TTAA	2 cut(s)	117, 426
MslI	CAYNNNNRTG	1 cut(s)	945
MspR9I	CCNGG	2 cut(s)	291, 875
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	291, 875
MvnI	CGCG	1 cut(s)	744
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	4 cut(s)	198, 703, 1018, 1162
NlaIII	CATG	4 cut(s)	139, 710, 833, 1163
NlaIV	GGNNCC	3 cut(s)	492, 883, 1152
NmuCI	GTSAC	2 cut(s)	142, 562
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	1171
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	917
PkrI	GCNGC	3 cut(s)	151, 165, 700
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	289, 873
PspGI	CCWGG	2 cut(s)	289, 873
PspN4I	GGNNCC	3 cut(s)	492, 883, 1152
PspPI	GGNCC	4 cut(s)	4, 151, 421, 871
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	574, 633, 1106
RsaNI	GTAC	3 cut(s)	573, 632, 1105
RseI	CAYNNNNRTG	1 cut(s)	945
SaqAI	TTAA	2 cut(s)	117, 426
SatI	GCNGC	3 cut(s)	150, 164, 699
Sau3AI	GATC	4 cut(s)	198, 703, 1018, 1162
Sau96I	GGNCC	4 cut(s)	4, 151, 421, 871
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	1 cut(s)	748
ScrFI	CCNGG	2 cut(s)	291, 875
SduI	GDGCHC	2 cut(s)	211, 613
SfaNI	GCATC	1 cut(s)	1045
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	2 cut(s)	756, 1000
SmoI	CTYRAG	2 cut(s)	756, 1000
Sse9I	AATT	9 cut(s)	128, 306, 390, 510, 616, 735, 860, 1127, 1132
SsiI	CCGC	3 cut(s)	149, 179, 744
SspMI	CTAG	2 cut(s)	350, 1082
StyD4I	CCNGG	2 cut(s)	289, 873
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	206, 286, 595, 623
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	613, 1207
TasI	AATT	9 cut(s)	128, 306, 390, 510, 616, 735, 860, 1127, 1132
TatI	WGTACW	2 cut(s)	572, 631
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	917
Tru1I	TTAA	2 cut(s)	117, 426
Tru9I	TTAA	2 cut(s)	117, 426
TscAI	CASTG	3 cut(s)	173, 260, 1028
TseFI	GTSAC	2 cut(s)	142, 562
TseI	GCWGC	2 cut(s)	163, 698
Tsp45I	GTSAC	2 cut(s)	142, 562
TspDTI	ATGAA	3 cut(s)	513, 786, 873
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	3 cut(s)	173, 260, 1028
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	4 cut(s)	128, 390, 860, 1127
XmiI	GTMKAC	3 cut(s)	11, 597, 846
XspI	CTAG	2 cut(s)	350, 1082
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.