Rh1DG091200

Phosphoribosylaminoimidazole-succinocarboxamide synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
17228008 .. 17232718
4711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG091200.1

Sequence Viewer

Length: 1182 bp
ATGGCGGCTCAGTATACCCGAACCTTAAACCCTCCCAAAACCCTCATCCCCAAGCTCCCAAATCTCAACCCCTCTTTGTCCTCCTTCAAAACCCCAAAACCCAAATCCAAAAGCTTCCCAACACTCTCTGTCTCGGCCATGGTGGCCCAAAATCAACCGCCTCTGGATGCTCTGCTCAACAGTGCTCGCAAACAAGAGGTGCTTGGCGCCATTGGGACTTCCTTGTCTAATTGTCTTTCTGAAACCAACCTCCACCTCACAGTTCCTGGCCTGAAATCCAAAACCAGAGGCAAGGTTAGGGATGTTTACGACAGTGGGGATTATCTAGTTATGGTCACCACGGATCGGCAGAGTGCATTTGATAGAATTCTTGCTTCCATTCCCTTTAAAGGCCAGGTCCTTAATGAAACAAGTTCATGGTGGTTTGACAAAACTCAACATATAACGTCAAATGCTGTTGTATCGGTTCCAGATGAAAATGTAACAATTGCGAAGAAATGTTCTGTTTTTCCGGTGGAGTTTGTGGTCAGAGGTTTTGTGACTGGCAGTACTGATACATCATTATGGACGGTCTACAGAAGTGGCATTCGAAATTACTGTGGCAATGTACTTCCAGACGGCTTGGTAAAAAGCCAAAAGCTTCCTGCAAATATACTCACACCAACAACTAAGGCTGCAGATCATGATGTTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGTCGAGCTGATTATGATGAAGTAAGTCGGAAAGCATTAAGCTTGTTTGAGTATGGACAGCGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTATGAATTTGGAAAGGGACAGGATGGTTCCATACATTTGATTGATGAGGTGCATACACCTGATTCAAGCAGATATTGGATTGCACATACTTATGAGGAACGTTTTCAGAATGGTCTTGAACCTGAGAATGTTGATAAGGAGTTCTTGAGGTTGTGGTTTAAAGATCATTGCAATCCATATGAAGATGAGGTCCTCCCTGATGCCCCTGAAGAACTTGTTCGTGAACTATCTTGGCGATATATTTTCTTGTATGAGACAATTACAAAATCAAAATTCAAGATGCCTTCAACAGAGGAGCCAATACATGATCGAATATCTCGCAATGTGGCACAAGCACTGTCATCTCTGTAA

Protein Analysis

393

Amino Acids

44.2

Weight (kDa)

6.18

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAICAR_synt PF01259 95 - 340 1.2e-68 SAICAR synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 223, 729
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 3 cut(s) 14, 573, 822
AciI CCGC 2 cut(s) 5, 158
AclI AACGTT 1 cut(s) 931
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 3 cut(s) 366, 836, 1103
AcuI CTGAAG 1 cut(s) 1059
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 550, 609
AfiI CCNNNNNNNGG 2 cut(s) 345, 389
AgsI TTSAA 6 cut(s) 88, 716, 897, 950, 1108, 1119
AjnI CCWGG 2 cut(s) 265, 393
AluBI AGCT 5 cut(s) 55, 114, 640, 737, 771
AluI AGCT 5 cut(s) 55, 114, 640, 737, 771
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 136, 1079
AlwI GGATC 1 cut(s) 351
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 4 cut(s) 135, 144, 268, 391
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 3 cut(s) 366, 836, 1103
Asp700I GAANNNNTTC 2 cut(s) 933, 1047
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 3 cut(s) 145, 397, 1021
AsuHPI GGTGA 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 589
AvaII GGWCC 2 cut(s) 397, 1021
BanI GGYRCC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 661
BccI CCATC 1 cut(s) 848
BceAI ACGGC 1 cut(s) 634
BciT130I CCWGG 2 cut(s) 267, 395
BcoDI GTCTC 2 cut(s) 136, 1079
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 2 cut(s) 574, 675
BfoI RGCGCY 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 6, 675
BlsI GCNGC 2 cut(s) 7, 676
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 2 cut(s) 267, 395
Bme18I GGWCC 2 cut(s) 397, 1021
BmgT120I GGNCC 3 cut(s) 145, 397, 1021
BmiI GGNNCC 4 cut(s) 208, 468, 859, 1128
BmrFI CCNGG 2 cut(s) 267, 395
BmsI GCATC 3 cut(s) 157, 1021, 1101
BpmI CTGGAG 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 997
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 138, 339
BsaWI WCCGGW 1 cut(s) 511
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 389
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 3 cut(s) 610, 997, 1159
BseBI CCWGG 2 cut(s) 267, 395
BseDI CCNNGG 2 cut(s) 138, 339
BseGI GGATG 4 cut(s) 45, 172, 307, 859
BseLI CCNNNNNNNGG 2 cut(s) 345, 389
BseMI GCAATG 3 cut(s) 610, 997, 1159
BseMII CTCAG 2 cut(s) 23, 945
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 1 cut(s) 1139
BseXI GCAGC 1 cut(s) 661
BshFI GGCC 4 cut(s) 137, 146, 270, 393
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 2 cut(s) 229, 861
BslI CCNNNNNNNGG 2 cut(s) 345, 389
BsmAI GTCTC 2 cut(s) 136, 1079
BsmFI GGGAC 2 cut(s) 229, 861
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 4 cut(s) 137, 146, 270, 393
Bsp119I TTCGAA 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 4 cut(s) 343, 679, 994, 1138
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 2 cut(s) 5, 158
BspANI GGCC 4 cut(s) 137, 146, 270, 393
BspCNI CTCAG 2 cut(s) 22, 946
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 4 cut(s) 208, 468, 859, 1128
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 589
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 3 cut(s) 610, 997, 1159
BsrI ACTGG 1 cut(s) 547
BssECI CCNNGG 2 cut(s) 138, 339
BssMI GATC 4 cut(s) 343, 679, 994, 1138
BssNAI GTATAC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 267, 395
Bst4CI ACNGT 6 cut(s) 182, 262, 314, 571, 599, 1170
BstACI GRCGYC 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 589
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 9, 669, 954
BstDSI CCRYGG 2 cut(s) 138, 339
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 4 cut(s) 45, 172, 307, 859
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 4 cut(s) 346, 682, 997, 1141
BstMAI GTCTC 2 cut(s) 136, 1079
BstMBI GATC 4 cut(s) 343, 679, 994, 1138
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 2 cut(s) 267, 395
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 265, 393
BstSFI CTRYAG 2 cut(s) 574, 675
BstV1I GCAGC 1 cut(s) 661
BstZ17I GTATAC 1 cut(s) 15
BsuRI GGCC 4 cut(s) 137, 146, 270, 393
BtgI CCRYGG 2 cut(s) 138, 339
BtsCI GGATG 4 cut(s) 45, 172, 307, 859
BtsIMutI CAGTG 3 cut(s) 187, 319, 1166
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 266
CciI TCATGA 1 cut(s) 682
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 145, 397, 1021
Csp6I GTAC 2 cut(s) 549, 608
CviAII CATG 5 cut(s) 139, 417, 683, 806, 1136
CviQI GTAC 2 cut(s) 549, 608
DdeI CTNAG 3 cut(s) 9, 669, 954
DinI GGCGCC 1 cut(s) 208
DpnI GATC 4 cut(s) 345, 681, 996, 1140
DpnII GATC 4 cut(s) 343, 679, 994, 1138
DraI TTTAAA 2 cut(s) 388, 991
DrdI GACNNNNNNGTC 2 cut(s) 223, 729
DseDI GACNNNNNNGTC 2 cut(s) 223, 729
EaeI YGGCCR 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 397, 1021
Eco57I CTGAAG 1 cut(s) 1059
Eco91I GGTNACC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 397, 1021
EcoO65I GGTNACC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 265, 393
EcoT14I CCWWGG 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 5 cut(s) 142, 420, 686, 809, 1139
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 959, 991
FaqI GGGAC 2 cut(s) 229, 861
FatI CATG 5 cut(s) 138, 416, 682, 805, 1135
FauNDI CATATG 1 cut(s) 1009
FblI GTMKAC 3 cut(s) 14, 573, 822
Fnu4HI GCNGC 2 cut(s) 6, 675
FokI GGATG 4 cut(s) 32, 179, 314, 866
Fsp4HI GCNGC 2 cut(s) 6, 675
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 208
GluI GCNGC 2 cut(s) 6, 675
GsuI CTGGAG 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 4 cut(s) 137, 146, 270, 393
HapII CCGG 1 cut(s) 512
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 5 cut(s) 142, 420, 686, 809, 1139
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 3 cut(s) 112, 638, 769
HinfI GANTC 2 cut(s) 730, 893
HpaII CCGG 1 cut(s) 512
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 6 cut(s) 15, 307, 574, 722, 823, 1055
Hpy188I TCNGA 4 cut(s) 241, 530, 759, 939
Hpy188III TCNNGA 9 cut(s) 164, 470, 614, 683, 701, 947, 976, 1052, 1108
Hpy8I GTNNAC 6 cut(s) 15, 307, 574, 722, 823, 1055
HpyAV CCTTC 2 cut(s) 94, 1125
HpyCH4III ACNGT 6 cut(s) 182, 262, 314, 571, 599, 1170
HpyCH4IV ACGT 3 cut(s) 446, 718, 931
HpyCH4V TGCA 6 cut(s) 356, 647, 677, 883, 914, 1002
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 9, 669, 954
HpySE526I ACGT 3 cut(s) 446, 718, 931
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 5 cut(s) 142, 420, 686, 809, 1139
HspAI GCGC 1 cut(s) 207
KasI GGCGCC 1 cut(s) 206
Kzo9I GATC 4 cut(s) 343, 679, 994, 1138
LmnI GCTCC 3 cut(s) 60, 802, 1126
Lsp1109I GCAGC 1 cut(s) 661
LweI GCATC 3 cut(s) 157, 1021, 1101
MaeI CTAG 1 cut(s) 326
MaeII ACGT 3 cut(s) 446, 718, 931
MaeIII GTNAC 4 cut(s) 334, 481, 538, 694
MalI GATC 4 cut(s) 345, 681, 996, 1140
MboI GATC 4 cut(s) 343, 679, 994, 1138
MboII GAAGA 3 cut(s) 505, 1025, 1052
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 8 cut(s) 229, 366, 486, 592, 711, 836, 1089, 1103
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 737
MroXI GAANNNNTTC 2 cut(s) 933, 1047
MseI TTAA 5 cut(s) 26, 387, 402, 767, 990
MslI CAYNNNNRTG 2 cut(s) 562, 921
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 267, 395
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 267, 395
MwoI GCNNNNNNNGC 1 cut(s) 143
NarI GGCGCC 1 cut(s) 207
NcoI CCATGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 1009
NdeII GATC 4 cut(s) 343, 679, 994, 1138
NlaIII CATG 5 cut(s) 142, 420, 686, 809, 1139
NlaIV GGNNCC 4 cut(s) 208, 468, 859, 1128
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 2 cut(s) 334, 538
NspV TTCGAA 1 cut(s) 589
PagI TCATGA 1 cut(s) 682
PctI GAATGC 1 cut(s) 585
PdmI GAANNNNTTC 2 cut(s) 933, 1047
PfeI GAWTC 1 cut(s) 893
PkrI GCNGC 2 cut(s) 7, 676
PleI GAGTC 1 cut(s) 738
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 738
PpuMI RGGWCCY 2 cut(s) 397, 1021
Psp1406I AACGTT 1 cut(s) 931
Psp5II RGGWCCY 2 cut(s) 397, 1021
Psp6I CCWGG 2 cut(s) 265, 393
PspEI GGTNACC 1 cut(s) 334
PspGI CCWGG 2 cut(s) 265, 393
PspN4I GGNNCC 4 cut(s) 208, 468, 859, 1128
PspPI GGNCC 3 cut(s) 145, 397, 1021
PspPPI RGGWCCY 2 cut(s) 397, 1021
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 550, 609
RsaNI GTAC 2 cut(s) 549, 608
RseI CAYNNNNRTG 2 cut(s) 562, 921
SaqAI TTAA 5 cut(s) 26, 387, 402, 767, 990
SatI GCNGC 2 cut(s) 6, 675
Sau3AI GATC 4 cut(s) 343, 679, 994, 1138
Sau96I GGNCC 3 cut(s) 145, 397, 1021
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 2 cut(s) 267, 395
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 3 cut(s) 157, 1021, 1101
SfcI CTRYAG 2 cut(s) 574, 675
SfiI GGCCNNNNNGGCC 1 cut(s) 143
SfoI GGCGCC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 589
SinI GGWCC 2 cut(s) 397, 1021
SmiMI CAYNNNNRTG 2 cut(s) 562, 921
SmlI CTYRAG 1 cut(s) 976
SmoI CTYRAG 1 cut(s) 976
Sse9I AATT 8 cut(s) 229, 366, 486, 592, 711, 836, 1089, 1103
SsiI CCGC 2 cut(s) 5, 158
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 265, 393
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 6 cut(s) 182, 262, 314, 571, 599, 1170
TaiI ACGT 3 cut(s) 449, 721, 934
TaqI TCGA 3 cut(s) 589, 733, 1141
TasI AATT 8 cut(s) 229, 366, 486, 592, 711, 836, 1089, 1103
TatI WGTACW 2 cut(s) 548, 607
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 893
Tru1I TTAA 5 cut(s) 26, 387, 402, 767, 990
Tru9I TTAA 5 cut(s) 26, 387, 402, 767, 990
TscAI CASTG 3 cut(s) 187, 319, 1173
TseFI GTSAC 2 cut(s) 334, 538
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 2 cut(s) 334, 538
TspDTI ATGAA 6 cut(s) 405, 420, 489, 762, 849, 1026
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 3 cut(s) 187, 319, 1173
VpaK11BI GGWCC 2 cut(s) 397, 1021
XapI RAATTY 3 cut(s) 366, 836, 1103
XmiI GTMKAC 3 cut(s) 14, 573, 822
XmnI GAANNNNTTC 2 cut(s) 933, 1047
XspI CTAG 1 cut(s) 326
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.