Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008788

Physical Location & Seq

Genomic Coordinates Forward (+)

16449988 .. 16451311

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGGAAGAAGAGGAAAGGCGGTGAGGACCCGTGCCCAGATCTTCCAGAAGATGTGGCATCAAAGGCGGAAGATGAGACATCAAAGGCGTGCAATTCAAGATCATCGGCCCTTAAATCGCATTATTCGCTAGAGGATTTTACAAGGTTGAAGAAGCGGTGCAAAGAAGATGATACGAGCACTGAACCTGTGGTTTCGCATACAAGTAGGCTTGCTGGAATTGCCACTGCTCCACCATGTGGGACTTCGTCTTTGGTTGCACCCGGAAGAGGTATCAAGAGGAAGATAGGTTGTATAGATGTTGCCACCCAGATGGGTAGGAAGAATAAGATTGAAGAAGATTATGCTTCGGGTGAAACACTTGGGCATGGAAAGTTTGGGTCAGTTTGGTTGTGTCAGTCCCGGGTTAGTGGCTCAGAGTATGCATGTAAGACTCTGAAGAAAGGAGAGGAGACTGTTCACAGGGAAGTGGAGATAATGCAGCATTTGTCTGGTCATCCAGGGGTTGTGACATTGCAGGCTGTGTATGAGGAGTCGAATTGTTTTCATCTTGTGATGGAGCTGTGCTCTGGAGGGCGCCTAATTGATCAAATGATTCAGGAGGTTCAGTATTCGGAGCAACGGGCTGCTAATATATTCAAGGAAGTGATGCTGGTTATCAAGTATTGTCATGATATGGGGGTTGTACACAGAGACATAAAGCCTGAGAACATACTTCTCACAAAAGCAGGAAAGTTAAAGCTCGCAGATTTTGGGCTGGCCATGAGAATATCAAACGTTCTGTCAAAATCTGACTGGTTTGGCTGGCAGTCCAGCTTATGTTGCACCAGAAGTTTTGCTAGGAAAGTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

285

Amino Acids

31.54

Weight (kDa)

8.65

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12680
fragaria_vesca	FvH4_5g35980
malus_domestica	MD08G1191300.v1.1 MD15G1379900.v1.1
prunus_persica	Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1
pyrus_communis	pycom08g16470
rosa_chinensis	RchiOBHm_Chr7g0237721
rosa_laevigata	RLG00000000974
rosa_multiflora	Rmu_ssc0000067.1_g000040
rosa_roxburghii	Rroxscaffold_3G00223800
rosa_rugosa	Rorug07G0307400 Rorug07G0307500 Rorug07G0307500 Rorug07G0307600
rosa_samantha	Rh7AG463400 Rh7BG433600 Rh7CG480400 Rh7DG449300
rosa_wichuraiana	Rw7G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	576
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	849
AciI	CCGC	3 cut(s)	21, 68, 157
AclI	AACGTT	1 cut(s)	777
AcoI	YGGCCR	1 cut(s)	759
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	577
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	2 cut(s)	239, 269
AgsI	TTSAA	4 cut(s)	99, 151, 335, 640
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	3 cut(s)	562, 742, 816
AluI	AGCT	3 cut(s)	562, 742, 816
Alw21I	GWGCWC	2 cut(s)	182, 569
Alw26I	GTCTC	3 cut(s)	71, 446, 687
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	2 cut(s)	108, 759
ApeKI	GCWGC	2 cut(s)	481, 626
ArsI	GACNNNNNNTTYG	4 cut(s)	235, 267, 767, 799
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	28, 109
AsuC2I	CCSGG	3 cut(s)	264, 403, 404
AsuHPI	GGTGA	2 cut(s)	35, 365
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	576
Bbv12I	GWGCWC	2 cut(s)	182, 569
BbvI	GCAGC	2 cut(s)	493, 613
BccI	CCATC	2 cut(s)	307, 550
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	3 cut(s)	264, 403, 404
BcoDI	GTCTC	3 cut(s)	71, 446, 687
BfaI	CTAG	2 cut(s)	131, 840
BfoI	RGCGCY	1 cut(s)	580
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	2 cut(s)	482, 627
BlsI	GCNGC	2 cut(s)	483, 628
Bme1390I	CCNGG	4 cut(s)	264, 403, 404, 501
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	28, 109
BmiI	GGNNCC	2 cut(s)	30, 578
BmrFI	CCNGG	4 cut(s)	264, 403, 404, 501
BmsI	GCATC	2 cut(s)	68, 639
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
BpmI	CTGGAG	1 cut(s)	591
BpuMI	CCSGG	3 cut(s)	264, 403, 404
BsaHI	GRCGYC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	402, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 269
Bse1I	ACTGG	1 cut(s)	800
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	402, 500
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	2 cut(s)	239, 269
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	429, 696
BseNI	ACTGG	1 cut(s)	800
BseRI	GAGGAG	2 cut(s)	464, 545
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	493, 613
BshFI	GGCC	2 cut(s)	110, 761
BshNI	GGYRCC	1 cut(s)	576
BsiHKAI	GWGCWC	2 cut(s)	182, 569
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	2 cut(s)	264, 403
BslFI	GGGAC	2 cut(s)	256, 385
BslI	CCNNNNNNNGG	2 cut(s)	239, 269
BsmAI	GTCTC	3 cut(s)	71, 446, 687
BsmFI	GGGAC	2 cut(s)	256, 385
BsnI	GGCC	2 cut(s)	110, 761
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	38, 182, 569
Bsp1407I	TGTACA	1 cut(s)	685
Bsp143I	GATC	3 cut(s)	40, 101, 586
BspACI	CCGC	3 cut(s)	21, 68, 157
BspANI	GGCC	2 cut(s)	110, 761
BspCNI	CTCAG	2 cut(s)	428, 697
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	30, 578
BspT107I	GGYRCC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	800
BssECI	CCNNGG	2 cut(s)	402, 500
BssMI	GATC	3 cut(s)	40, 101, 586
BssNAI	GTATAC	1 cut(s)	850
BssNI	GRCGYC	1 cut(s)	577
Bst1107I	GTATAC	1 cut(s)	850
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	2 cut(s)	5, 262
BstACI	GRCGYC	1 cut(s)	577
BstAUI	TGTACA	1 cut(s)	685
BstC8I	GCNNGC	6 cut(s)	91, 213, 519, 744, 759, 806
BstDEI	CTNAG	2 cut(s)	415, 705
BstF5I	GGATG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	3 cut(s)	43, 104, 589
BstMAI	GTCTC	3 cut(s)	71, 446, 687
BstMBI	GATC	3 cut(s)	40, 101, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 127, 221, 822
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	4 cut(s)	262, 401, 402, 499
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	493, 613
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	40
BstZ17I	GTATAC	1 cut(s)	850
BsuRI	GGCC	2 cut(s)	110, 761
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	180, 225
Cac8I	GCNNGC	6 cut(s)	91, 213, 519, 744, 759, 806
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	2 cut(s)	28, 109
Cfr9I	CCCGGG	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	5 cut(s)	237, 368, 426, 671, 763
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	2 cut(s)	415, 705
DinI	GGCGCC	1 cut(s)	578
DpnI	GATC	3 cut(s)	42, 103, 588
DpnII	GATC	3 cut(s)	40, 101, 586
DraIII	CACNNNGTG	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	759
Eam1104I	CTCTTC	2 cut(s)	5, 262
EarI	CTCTTC	2 cut(s)	5, 262
EciI	GGCGGA	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	578
EheI	GGCGCC	1 cut(s)	578
FaeI	CATG	5 cut(s)	240, 371, 429, 674, 766
FaqI	GGGAC	2 cut(s)	256, 385
FatI	CATG	5 cut(s)	236, 367, 425, 670, 762
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	2 cut(s)	482, 627
FokI	GGATG	1 cut(s)	483
Fsp4HI	GCNGC	2 cut(s)	482, 627
FspBI	CTAG	2 cut(s)	131, 840
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	2 cut(s)	482, 627
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	2 cut(s)	110, 761
HapII	CCGG	2 cut(s)	264, 403
HhaI	GCGC	1 cut(s)	579
Hin1I	GRCGYC	1 cut(s)	577
Hin1II	CATG	5 cut(s)	240, 371, 429, 674, 766
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HinfI	GANTC	3 cut(s)	433, 533, 595
HpaII	CCGG	2 cut(s)	264, 403
HphI	GGTGA	2 cut(s)	35, 365
Hpy166II	GTNNAC	3 cut(s)	460, 688, 850
Hpy188I	TCNGA	4 cut(s)	418, 438, 616, 793
Hpy188III	TCNNGA	6 cut(s)	47, 99, 277, 570, 599, 671
Hpy8I	GTNNAC	3 cut(s)	460, 688, 850
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	7 cut(s)	93, 162, 260, 425, 481, 517, 825
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 127, 221, 822
HpyF3I	CTNAG	2 cut(s)	415, 705
HpySE526I	ACGT	1 cut(s)	777
Hsp92I	GRCGYC	1 cut(s)	577
Hsp92II	CATG	5 cut(s)	240, 371, 429, 674, 766
HspAI	GCGC	1 cut(s)	577
KasI	GGCGCC	1 cut(s)	576
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	40, 101, 586
LmnI	GCTCC	3 cut(s)	235, 559, 616
Lsp1109I	GCAGC	2 cut(s)	493, 613
LweI	GCATC	2 cut(s)	68, 639
MaeI	CTAG	2 cut(s)	131, 840
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	42, 103, 588
MboI	GATC	3 cut(s)	40, 101, 586
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	38, 182, 569
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	4 cut(s)	94, 219, 538, 582
MluNI	TGGCCA	1 cut(s)	761
Mly113I	GGCGCC	1 cut(s)	577
MlyI	GAGTC	2 cut(s)	427, 542
MnlI	CCTC	9 cut(s)	6, 19, 127, 263, 273, 442, 523, 566, 595
Mox20I	TGGCCA	1 cut(s)	761
Mph1103I	ATGCAT	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	2 cut(s)	114, 737
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	761
MspI	CCGG	2 cut(s)	264, 403
MspR9I	CCNGG	4 cut(s)	264, 403, 404, 501
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	65, 127, 221, 822
NarI	GGCGCC	1 cut(s)	577
NciI	CCSGG	3 cut(s)	264, 403, 404
NdeII	GATC	3 cut(s)	40, 101, 586
NlaIII	CATG	5 cut(s)	240, 371, 429, 674, 766
NlaIV	GGNNCC	2 cut(s)	30, 578
NmuCI	GTSAC	1 cut(s)	508
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	429
PagI	TCATGA	1 cut(s)	670
PfeI	GAWTC	1 cut(s)	595
PflFI	GACNNNGTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	483, 628
PleI	GAGTC	2 cut(s)	427, 541
PluTI	GGCGCC	1 cut(s)	580
PpsI	GAGTC	2 cut(s)	427, 541
PpuMI	RGGWCCY	1 cut(s)	28
Psp1406I	AACGTT	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	30, 578
PspPI	GGNCC	2 cut(s)	28, 109
PspPPI	RGGWCCY	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	114, 737
SatI	GCNGC	2 cut(s)	482, 627
Sau3AI	GATC	3 cut(s)	40, 101, 586
Sau96I	GGNCC	2 cut(s)	28, 109
SchI	GAGTC	2 cut(s)	427, 542
ScrFI	CCNGG	4 cut(s)	264, 403, 404, 501
SduI	GDGCHC	3 cut(s)	38, 182, 569
SetI	ASST	9 cut(s)	149, 190, 274, 292, 564, 606, 744, 780, 818
SfaNI	GCATC	2 cut(s)	68, 639
SfoI	GGCGCC	1 cut(s)	578
SinI	GGWCC	1 cut(s)	28
SmaI	CCCGGG	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	94, 219, 538, 582
SsiI	CCGC	3 cut(s)	21, 68, 157
SspDI	GGCGCC	1 cut(s)	576
SspMI	CTAG	2 cut(s)	131, 840
StyD4I	CCNGG	4 cut(s)	262, 401, 402, 499
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	1 cut(s)	536
TasI	AATT	4 cut(s)	94, 219, 538, 582
TatI	WGTACW	1 cut(s)	685
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	2 cut(s)	114, 737
Tru9I	TTAA	2 cut(s)	114, 737
TscAI	CASTG	2 cut(s)	187, 232
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	481, 626
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	1 cut(s)	536
TspMI	CCCGGG	1 cut(s)	402
TspRI	CASTG	2 cut(s)	187, 232
Tth111I	GACNNNGTC	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	28
XceI	RCATGY	1 cut(s)	429
XmaI	CCCGGG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	849
XspI	CTAG	2 cut(s)	131, 840
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.