Rmu_ssc0000067.1_g000040
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000067.1
Physical Location & Seq
Forward (+)
144494 .. 147049
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000067.1_g000040.1.cds

Sequence Viewer

Length: 1395 bp
atgaggaagaagaggaaaggaggtgtggatgacacatccccagatccaccggaggctctgacatcaaagtcgtgcaattcacggtcgttgccgctagaggattattcaaggttgaagaagcggtgtaaagaagatgatgcgggtaatgaatctgtgggatcgtataaaagtaggcttgcaggcattgccaccgctccgccgtgtgggacttcgtctttggtcacaccaggaagaggcatcaagaggaagatagggtgtatagatgttgctacccaaatgggtaggaagaataagattgaggaagattatagcaagggtgctacaattggacgtggaaagtttggttcagtttggttgtgtcagtcccgggggagtggggcagagtttgcttgtaagactctgaagaaaggggaagagacagttcatagggaggtggagataatgcagcatttgtctggtcatcctggggttgtgacattacaggctgtgtatgaggagtcggaatgttttcatcttgtgatggagttgtgctcaggtgggcgcttgattgatcagatgcttcaggagggtcagtattcagagcagcgggctgctaatatattcaaggaagtgatgctagttatcaagtattgtcatgatatgggggttgtgcacagagacataaagcctgagaatattcttcttacaaaagcaggaaagataaagcttgcagattttggactggccatgagaatatcctacggtcaaaatttgactggtttggctggaagtccagcttatgttgcaccagaagttttagtggggaagtactctgagaaggtggatatctggagtgctggtgtcctcctacatgcgctcttggttggttatcttccatttcaaggagactccatagaagcggtttttgagtcggtcaagactgagaagcttgatttccatacaaggatatgggagtcaatttcaaaacctgcgcgagatcttcttggtagaatgctgacaagggatgtttcagtacggataacagcagatgaagtacttaggcatccatggatattattttatactgagcgaacgttgaaggcactacccattaaatcgagattgaagaatcaagcaggagcgccttgccaccaacttgccattgcacccagactaaaggcagtactgaacaaaacagaagatggttctctcagtgaaactcttagcggcccttcatcttctggtagttgcaagtcagatgatcaagatgattgtggtttagtagatgcacttgccactgccgtttcacacgtgagaatttctgagccaaaaaggaccaggctgtgtagtcccacaggtccaattgagcagcagtgttcatctaacatgaaagctaacctctgtaaagcattttga

Protein Analysis

464

Amino Acids

50.79

Weight (kDa)

8.82

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 976
AccBSI CCGCTC 1 cut(s) 194
AccII CGCG 1 cut(s) 973
AciI CCGC 8 cut(s) 92, 121, 140, 192, 197, 586, 899, 1206
AclI AACGTT 1 cut(s) 1073
AclWI GGATC 2 cut(s) 38, 166
AcoI YGGCCR 1 cut(s) 723
AcsI RAATTY 2 cut(s) 748, 1296
AcuI CTGAAG 2 cut(s) 422, 545
AcvI CACGTG 1 cut(s) 1291
AfaI GTAC 4 cut(s) 809, 1014, 1035, 1164
AfiI CCNNNNNNNGG 3 cut(s) 203, 233, 881
AflIII ACRYGT 1 cut(s) 1288
AgsI TTSAA 7 cut(s) 108, 115, 604, 881, 963, 1078, 1105
AjiI CACGTC 1 cut(s) 332
AjnI CCWGG 3 cut(s) 226, 463, 1316
AluBI AGCT 4 cut(s) 706, 776, 928, 1373
AluI AGCT 4 cut(s) 706, 776, 928, 1373
Alw21I GWGCWC 2 cut(s) 533, 654
Alw26I GTCTC 3 cut(s) 410, 651, 879
Alw44I GTGCAC 1 cut(s) 650
AlwI GGATC 2 cut(s) 38, 166
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 2 cut(s) 723, 1207
ApaLI GTGCAC 1 cut(s) 650
ApeKI GCWGC 4 cut(s) 445, 583, 590, 1348
ApoI RAATTY 2 cut(s) 748, 1296
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 4 cut(s) 543, 856, 973, 1123
AspS9I GGNCC 3 cut(s) 1208, 1314, 1337
AsuC2I CCSGG 2 cut(s) 367, 368
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 2 cut(s) 1314, 1337
BaeGI GKGCMC 1 cut(s) 654
BalI TGGCCA 1 cut(s) 725
BbrPI CACGTG 1 cut(s) 1291
Bbv12I GWGCWC 2 cut(s) 533, 654
BbvI GCAGC 4 cut(s) 457, 577, 595, 1360
BccI CCATC 2 cut(s) 514, 1175
BceAI ACGGC 2 cut(s) 184, 1265
BciT130I CCWGG 3 cut(s) 228, 465, 1318
BclI TGATCA 2 cut(s) 550, 1240
BcnI CCSGG 2 cut(s) 367, 368
BcoDI GTCTC 3 cut(s) 410, 651, 879
BfaI CTAG 2 cut(s) 95, 617
BfoI RGCGCY 2 cut(s) 544, 1124
BfuAI ACCTGC 1 cut(s) 976
BglII AGATCT 1 cut(s) 976
BisI GCNGC 6 cut(s) 92, 446, 584, 591, 1207, 1349
BlsI GCNGC 6 cut(s) 93, 447, 585, 592, 1208, 1350
BmcAI AGTACT 3 cut(s) 809, 1035, 1164
Bme1390I CCNGG 5 cut(s) 228, 367, 368, 465, 1318
Bme18I GGWCC 2 cut(s) 1314, 1337
BmeT110I CYCGRG 1 cut(s) 366
BmgBI CACGTC 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 1208, 1314, 1337
BmrFI CCNGG 5 cut(s) 228, 367, 368, 465, 1318
BmsI GCATC 6 cut(s) 127, 246, 546, 603, 1051, 1255
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 850
Bpu10I CCTNAGC 1 cut(s) 532
BpuMI CCSGG 2 cut(s) 367, 368
BsaAI YACGTR 1 cut(s) 1291
BsaJI CCNNGG 4 cut(s) 366, 367, 464, 1046
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 4 cut(s) 557, 587, 823, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 233, 881
Bse1I ACTGG 2 cut(s) 726, 760
Bse3DI GCAATG 2 cut(s) 183, 1140
BseBI CCWGG 3 cut(s) 228, 465, 1318
BseDI CCNNGG 4 cut(s) 366, 367, 464, 1046
BseGI GGATG 5 cut(s) 34, 35, 460, 1009, 1042
BseLI CCNNNNNNNGG 3 cut(s) 203, 233, 881
BseMI GCAATG 2 cut(s) 183, 1140
BseMII CTCAG 7 cut(s) 546, 660, 804, 912, 1056, 1204, 1293
BseNI ACTGG 2 cut(s) 726, 760
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 4 cut(s) 457, 577, 595, 1360
Bsh1236I CGCG 1 cut(s) 973
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 725, 1209
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 2 cut(s) 533, 654
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 2 cut(s) 50, 367
BslFI GGGAC 3 cut(s) 220, 349, 1314
BslI CCNNNNNNNGG 3 cut(s) 203, 233, 881
BsmAI GTCTC 3 cut(s) 410, 651, 879
BsmFI GGGAC 3 cut(s) 220, 349, 1314
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 2 cut(s) 725, 1209
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 533, 654
Bsp143I GATC 5 cut(s) 43, 158, 550, 976, 1240
Bsp19I CCATGG 1 cut(s) 1046
BspACI CCGC 8 cut(s) 92, 121, 140, 192, 197, 586, 899, 1206
BspANI GGCC 2 cut(s) 725, 1209
BspCNI CTCAG 7 cut(s) 545, 661, 805, 913, 1057, 1203, 1294
BspFNI CGCG 1 cut(s) 973
BspHI TCATGA 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 976
BspPI GGATC 2 cut(s) 38, 166
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 183, 1140
BsrI ACTGG 2 cut(s) 726, 760
BssECI CCNNGG 4 cut(s) 366, 367, 464, 1046
BssMI GATC 5 cut(s) 43, 158, 550, 976, 1240
BssT1I CCWWGG 1 cut(s) 1046
Bst2UI CCWGG 3 cut(s) 228, 465, 1318
Bst4CI ACNGT 3 cut(s) 84, 421, 743
Bst6I CTCTTC 3 cut(s) 5, 226, 408
BstAPI GCANNNNNTGC 2 cut(s) 185, 386
BstBAI YACGTR 1 cut(s) 1291
BstC8I GCNNGC 4 cut(s) 177, 181, 588, 708
BstDEI CTNAG 9 cut(s) 532, 669, 813, 921, 1037, 1065, 1190, 1202, 1302
BstDSI CCRYGG 1 cut(s) 1046
BstF5I GGATG 5 cut(s) 34, 35, 460, 1009, 1042
BstFNI CGCG 1 cut(s) 973
BstH2I RGCGCY 2 cut(s) 544, 1124
BstHHI GCGC 4 cut(s) 543, 856, 973, 1123
BstKTI GATC 5 cut(s) 46, 161, 553, 979, 1243
BstMAI GTCTC 3 cut(s) 410, 651, 879
BstMBI GATC 5 cut(s) 43, 158, 550, 976, 1240
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 3 cut(s) 185, 386, 782
BstNI CCWGG 3 cut(s) 228, 465, 1318
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 5 cut(s) 226, 365, 366, 463, 1316
BstSLI GKGCMC 1 cut(s) 654
BstUI CGCG 1 cut(s) 973
BstV1I GCAGC 4 cut(s) 457, 577, 595, 1360
BstX2I RGATCY 2 cut(s) 43, 976
BstYI RGATCY 2 cut(s) 43, 976
BsuRI GGCC 2 cut(s) 725, 1209
BtgI CCRYGG 1 cut(s) 1046
BtrI CACGTC 1 cut(s) 332
BtsCI GGATG 5 cut(s) 34, 35, 460, 1009, 1042
BtsI GCAGTG 2 cut(s) 1275, 1358
BtsIMutI CAGTG 3 cut(s) 1198, 1275, 1358
BveI ACCTGC 1 cut(s) 976
Cac8I GCNNGC 4 cut(s) 177, 181, 588, 708
CciI TCATGA 1 cut(s) 634
CfoI GCGC 4 cut(s) 543, 856, 973, 1123
Cfr13I GGNCC 3 cut(s) 1208, 1314, 1337
Cfr9I CCCGGG 1 cut(s) 366
Csp6I GTAC 4 cut(s) 808, 1013, 1034, 1163
CviAII CATG 5 cut(s) 635, 727, 851, 1047, 1366
CviQI GTAC 4 cut(s) 808, 1013, 1034, 1163
DdeI CTNAG 9 cut(s) 532, 669, 813, 921, 1037, 1065, 1190, 1202, 1302
DpnI GATC 5 cut(s) 45, 160, 552, 978, 1242
DpnII GATC 5 cut(s) 43, 158, 550, 976, 1240
DrdI GACNNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 3 cut(s) 5, 226, 408
EarI CTCTTC 3 cut(s) 5, 226, 408
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 1046
Eco32I GATATC 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 1314, 1337
Eco57I CTGAAG 2 cut(s) 422, 545
Eco72I CACGTG 1 cut(s) 1291
Eco88I CYCGRG 1 cut(s) 366
EcoRII CCWGG 3 cut(s) 226, 463, 1316
EcoRV GATATC 1 cut(s) 826
EcoT14I CCWWGG 1 cut(s) 1046
ErhI CCWWGG 1 cut(s) 1046
FaeI CATG 5 cut(s) 638, 730, 854, 1050, 1369
FalI AAGNNNNNCTT 2 cut(s) 760, 792
FaqI GGGAC 3 cut(s) 220, 349, 1314
FatI CATG 5 cut(s) 634, 726, 850, 1046, 1365
FauI CCCGC 2 cut(s) 133, 579
FbaI TGATCA 2 cut(s) 550, 1240
Fnu4HI GCNGC 6 cut(s) 92, 446, 584, 591, 1207, 1349
FokI GGATG 5 cut(s) 22, 41, 447, 1016, 1029
Fsp4HI GCNGC 6 cut(s) 92, 446, 584, 591, 1207, 1349
FspBI CTAG 2 cut(s) 95, 617
GlaI GCGC 4 cut(s) 542, 855, 972, 1122
GluI GCNGC 6 cut(s) 92, 446, 584, 591, 1207, 1349
GsuI CTGGAG 1 cut(s) 850
HaeII RGCGCY 2 cut(s) 544, 1124
HaeIII GGCC 2 cut(s) 725, 1209
HapII CCGG 2 cut(s) 50, 367
HhaI GCGC 4 cut(s) 543, 856, 973, 1123
Hin1II CATG 5 cut(s) 638, 730, 854, 1050, 1369
Hin6I GCGC 4 cut(s) 541, 854, 971, 1121
HinP1I GCGC 4 cut(s) 541, 854, 971, 1121
HindIII AAGCTT 2 cut(s) 704, 926
HinfI GANTC 7 cut(s) 149, 397, 497, 887, 908, 953, 1108
HpaII CCGG 2 cut(s) 50, 367
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 8 cut(s) 60, 402, 502, 555, 580, 814, 1237, 1303
Hpy188III TCNNGA 7 cut(s) 241, 563, 635, 829, 916, 1098, 1244
Hpy8I GTNNAC 1 cut(s) 652
HpyAV CCTTC 3 cut(s) 811, 1072, 1221
HpyCH4III ACNGT 3 cut(s) 84, 421, 743
HpyCH4IV ACGT 3 cut(s) 331, 1073, 1290
HpyCH4V TGCA 9 cut(s) 75, 179, 445, 652, 710, 785, 1145, 1230, 1268
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 386, 782
HpyF3I CTNAG 9 cut(s) 532, 669, 813, 921, 1037, 1065, 1190, 1202, 1302
HpySE526I ACGT 3 cut(s) 331, 1073, 1290
Hsp92II CATG 5 cut(s) 638, 730, 854, 1050, 1369
HspAI GCGC 4 cut(s) 541, 854, 971, 1121
Ksp22I TGATCA 2 cut(s) 550, 1240
Kzo9I GATC 5 cut(s) 43, 158, 550, 976, 1240
LmnI GCTCC 2 cut(s) 199, 1118
Lsp1109I GCAGC 4 cut(s) 457, 577, 595, 1360
LweI GCATC 6 cut(s) 127, 246, 546, 603, 1051, 1255
MaeI CTAG 2 cut(s) 95, 617
MaeII ACGT 3 cut(s) 331, 1073, 1290
MaeIII GTNAC 2 cut(s) 220, 472
MalI GATC 5 cut(s) 45, 160, 552, 978, 1242
MbiI CCGCTC 1 cut(s) 194
MboI GATC 5 cut(s) 43, 158, 550, 976, 1240
MfeI CAATTG 2 cut(s) 324, 1341
MflI RGATCY 2 cut(s) 43, 976
MhlI GDGCHC 2 cut(s) 533, 654
MlsI TGGCCA 1 cut(s) 725
MluCI AATT 6 cut(s) 76, 324, 748, 957, 1296, 1341
MluNI TGGCCA 1 cut(s) 725
MlyI GAGTC 5 cut(s) 391, 506, 881, 917, 962
MmeI TCCRAC 1 cut(s) 480
Mox20I TGGCCA 1 cut(s) 725
MroXI GAANNNNTTC 1 cut(s) 507
MscI TGGCCA 1 cut(s) 725
MseI TTAA 1 cut(s) 1092
Msp20I TGGCCA 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 2 cut(s) 50, 367
MspR9I CCNGG 5 cut(s) 228, 367, 368, 465, 1318
MunI CAATTG 2 cut(s) 324, 1341
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 3 cut(s) 228, 465, 1318
MvnI CGCG 1 cut(s) 973
MwoI GCNNNNNNNGC 3 cut(s) 185, 386, 782
NciI CCSGG 2 cut(s) 367, 368
NcoI CCATGG 1 cut(s) 1046
NdeII GATC 5 cut(s) 43, 158, 550, 976, 1240
NlaIII CATG 5 cut(s) 638, 730, 854, 1050, 1369
NmuCI GTSAC 2 cut(s) 220, 472
NspI RCATGY 1 cut(s) 854
PagI TCATGA 1 cut(s) 634
PctI GAATGC 1 cut(s) 996
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 149, 1108
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 6 cut(s) 93, 447, 585, 592, 1208, 1350
PleI GAGTC 5 cut(s) 391, 505, 881, 916, 961
PmaCI CACGTG 1 cut(s) 1291
PmlI CACGTG 1 cut(s) 1291
PpsI GAGTC 5 cut(s) 391, 505, 881, 916, 961
Ppu21I YACGTR 1 cut(s) 1291
Psp1406I AACGTT 1 cut(s) 1073
Psp6I CCWGG 3 cut(s) 226, 463, 1316
PspCI CACGTG 1 cut(s) 1291
PspGI CCWGG 3 cut(s) 226, 463, 1316
PspPI GGNCC 3 cut(s) 1208, 1314, 1337
PsuI RGATCY 2 cut(s) 43, 976
PsyI GACNNNGTC 1 cut(s) 211
RsaI GTAC 4 cut(s) 809, 1014, 1035, 1164
RsaNI GTAC 4 cut(s) 808, 1013, 1034, 1163
SaqAI TTAA 1 cut(s) 1092
SatI GCNGC 6 cut(s) 92, 446, 584, 591, 1207, 1349
Sau3AI GATC 5 cut(s) 43, 158, 550, 976, 1240
Sau96I GGNCC 3 cut(s) 1208, 1314, 1337
ScaI AGTACT 3 cut(s) 809, 1035, 1164
SchI GAGTC 5 cut(s) 391, 506, 881, 917, 962
ScrFI CCNGG 5 cut(s) 228, 367, 368, 465, 1318
SduI GDGCHC 2 cut(s) 533, 654
SfaNI GCATC 6 cut(s) 127, 246, 546, 603, 1051, 1255
SinI GGWCC 2 cut(s) 1314, 1337
SmaI CCCGGG 1 cut(s) 368
Sse9I AATT 6 cut(s) 76, 324, 748, 957, 1296, 1341
SsiI CCGC 8 cut(s) 92, 121, 140, 192, 197, 586, 899, 1206
SspI AATATT 1 cut(s) 676
SspMI CTAG 2 cut(s) 95, 617
StyD4I CCNGG 5 cut(s) 226, 365, 366, 463, 1316
StyI CCWWGG 1 cut(s) 1046
TaaI ACNGT 3 cut(s) 84, 421, 743
TaiI ACGT 3 cut(s) 334, 1076, 1293
TaqI TCGA 1 cut(s) 1097
TaqII GACCGA 1 cut(s) 901
TasI AATT 6 cut(s) 76, 324, 748, 957, 1296, 1341
TatI WGTACW 3 cut(s) 807, 1033, 1162
TauI GCSGC 2 cut(s) 94, 1209
TfiI GAWTC 2 cut(s) 149, 1108
Tru1I TTAA 1 cut(s) 1092
Tru9I TTAA 1 cut(s) 1092
TscAI CASTG 3 cut(s) 1198, 1282, 1358
TseFI GTSAC 2 cut(s) 220, 472
TseI GCWGC 4 cut(s) 445, 583, 590, 1348
Tsp45I GTSAC 2 cut(s) 220, 472
TspDTI ATGAA 7 cut(s) 162, 413, 500, 1044, 1203, 1347, 1382
TspGWI ACGGA 1 cut(s) 1030
TspMI CCCGGG 1 cut(s) 366
TspRI CASTG 3 cut(s) 1198, 1282, 1358
Tth111I GACNNNGTC 1 cut(s) 211
VneI GTGCAC 1 cut(s) 650
VpaK11BI GGWCC 2 cut(s) 1314, 1337
XapI RAATTY 2 cut(s) 748, 1296
XceI RCATGY 1 cut(s) 854
XmaI CCCGGG 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 2 cut(s) 95, 617
ZrmI AGTACT 3 cut(s) 809, 1035, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.