Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008788

Physical Location & Seq

Genomic Coordinates Reverse (-)

63789806 .. 63793879

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG463400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGGAAGAAGAGGAAAGGAGGTGTGGATGACACATCCCCAGATCCACCGGAGGCTCTGACATCAAAGTCGTGCAATTCACGGTCGTTGCCGCTAGAGGATTATTCAAGGTTGAAGAAGCGGTGTAAAGAAGATGATGCGGGTAATGAATCTGCGGGATCGTATAAAAGTAGGCTTGCAGGCATTGCCACCGCTCCGCCGTGTGGGACTTCGTCTTTGGTCACACCAGGAAGAGGCATCAAGAGGAAGATAGGGTGTATAGATGTTGCTACCCAAATGGGTAGGAAGAATAAGATTGAGGAAGATTATAGCAAGGGTGCTACAATTGGACGTGGAAAGTTTGGTTCAGTTTGGTTGTGTCAGTCCCGGGGGAGTGGGGCAGAGTTTGCTTGCAAGACTCTGAAGAAAGGGGAAGAGACGGTTCATAGGGAGGTGGAGATAATGCAGCATTTGTCTGGTCATCCTGGGGTTGTGACATTACAGGCTGTGTATGAGGAGTCGGAATGTTTTCATCTTGTGATGGAGTTGTGCTCAGGTGGGCGCTTGATTGATCAGATGCTTCAGGAGGGTCAGTATTCAGAGCAGCGGGCTGCTAATATATTCAAGGAAGTGATGCTAGTTATCAAGTATTGTCATGATATGGGGGTTGTGCACAGAGACATAAAGCCTGAGAATATTCTTCTTACTAAAGCAGGAAAGATAAAGCTTGCAGATTTTGGACTGGCCATGAGAATATCCTACGGTCAAAATTTGACTGGTTTGGCTGGAAGTCCAGCTTATGTTGCACCAGAAGTTTTAGTGGGGAAGTACTCTGAGAAGGTGGATATCTGGAGTGCTGGTGTCCTCCTACATGCGCTCTTGGTTGGTTATCTTCCATTTCAAGGAGACTCCATAGAAGCGGTTTTTGAGTCGGTCAAGACTGAGAAGCTTGATTTCCATACAGGGATATGGGAGTCAATTTCTAAACCTGCGCGAGATCTTCTTGGTAGAATGCTGACAAGGGATGTTTCAGTACGGATAACAGCAGATGAAGTACTTAGTAAGTTTATCGTTCTGTTGAATTTGGGAAGTGTTAGCTATATTCAACTCTTTATTACACATATTCCATCTTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

372

Amino Acids

40.84

Weight (kDa)

8.59

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	103 - 347	1.3e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 309	1.3e-33	Protein tyrosine and serine/threonine kinase
Kdo	PF06293	137 - 240	5.4e-06	Lipopolysaccharide kinase (Kdo/WaaP) family
ABC1	PF03109	167 - 246	5.7e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12680
fragaria_vesca	FvH4_5g35980
malus_domestica	MD08G1191300.v1.1 MD15G1379900.v1.1
prunus_persica	Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1 Prupe.1G526200_v2.0.a1
pyrus_communis	pycom08g16470
rosa_chinensis	RchiOBHm_Chr7g0237721
rosa_laevigata	RLG00000000974
rosa_multiflora	Rmu_ssc0000067.1_g000040
rosa_roxburghii	Rroxscaffold_3G00223800
rosa_rugosa	Rorug07G0307400 Rorug07G0307500 Rorug07G0307500 Rorug07G0307600
rosa_samantha	Rh7AG463400 Rh7BG433600 Rh7CG480400 Rh7DG449300
rosa_wichuraiana	Rw7G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	976
AccBSI	CCGCTC	1 cut(s)	194
AccII	CGCG	1 cut(s)	973
AciI	CCGC	8 cut(s)	92, 121, 140, 155, 192, 197, 586, 899
AclWI	GGATC	2 cut(s)	38, 166
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	2 cut(s)	748, 1060
AcuI	CTGAAG	2 cut(s)	422, 545
AfaI	GTAC	3 cut(s)	809, 1014, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	203, 233, 881
AgsI	TTSAA	6 cut(s)	108, 115, 604, 881, 1060, 1085
AjiI	CACGTC	1 cut(s)	332
AjnI	CCWGG	2 cut(s)	226, 463
AluBI	AGCT	4 cut(s)	706, 776, 928, 1077
AluI	AGCT	4 cut(s)	706, 776, 928, 1077
Alw21I	GWGCWC	2 cut(s)	533, 654
Alw26I	GTCTC	3 cut(s)	410, 651, 879
Alw44I	GTGCAC	1 cut(s)	650
AlwI	GGATC	2 cut(s)	38, 166
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	723
ApaLI	GTGCAC	1 cut(s)	650
ApeKI	GCWGC	3 cut(s)	445, 583, 590
ApoI	RAATTY	2 cut(s)	748, 1060
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	3 cut(s)	543, 856, 973
AsuC2I	CCSGG	2 cut(s)	367, 368
AvaI	CYCGRG	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	725
Bbv12I	GWGCWC	2 cut(s)	533, 654
BbvI	GCAGC	3 cut(s)	457, 577, 595
BccI	CCATC	2 cut(s)	514, 1114
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	228, 465
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	2 cut(s)	367, 368
BcoDI	GTCTC	3 cut(s)	410, 651, 879
BfaI	CTAG	2 cut(s)	95, 617
BfoI	RGCGCY	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	976
BglII	AGATCT	1 cut(s)	976
BisI	GCNGC	4 cut(s)	92, 446, 584, 591
BlsI	GCNGC	4 cut(s)	93, 447, 585, 592
BmcAI	AGTACT	2 cut(s)	809, 1035
Bme1390I	CCNGG	4 cut(s)	228, 367, 368, 465
BmeT110I	CYCGRG	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	332
BmrFI	CCNGG	4 cut(s)	228, 367, 368, 465
BmsI	GCATC	4 cut(s)	127, 246, 546, 603
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	850
Bpu10I	CCTNAGC	1 cut(s)	532
BpuMI	CCSGG	2 cut(s)	367, 368
BsaJI	CCNNGG	3 cut(s)	366, 367, 464
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	4 cut(s)	557, 587, 823, 853
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 233, 881
Bse1I	ACTGG	2 cut(s)	726, 760
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	228, 465
BseDI	CCNNGG	3 cut(s)	366, 367, 464
BseGI	GGATG	4 cut(s)	34, 35, 460, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	203, 233, 881
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	4 cut(s)	546, 660, 804, 912
BseNI	ACTGG	2 cut(s)	726, 760
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	3 cut(s)	457, 577, 595
Bsh1236I	CGCG	1 cut(s)	973
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	725
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	533, 654
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	2 cut(s)	50, 367
BslFI	GGGAC	2 cut(s)	220, 349
BslI	CCNNNNNNNGG	3 cut(s)	203, 233, 881
BsmAI	GTCTC	3 cut(s)	410, 651, 879
BsmBI	CGTCTC	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	220, 349
BsmI	GAATGC	1 cut(s)	996
BsnI	GGCC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	533, 654
Bsp143I	GATC	4 cut(s)	43, 158, 550, 976
BspACI	CCGC	8 cut(s)	92, 121, 140, 155, 192, 197, 586, 899
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	4 cut(s)	545, 661, 805, 913
BspFNI	CGCG	1 cut(s)	973
BspHI	TCATGA	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	976
BspPI	GGATC	2 cut(s)	38, 166
BsrBI	CCGCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	726, 760
BssECI	CCNNGG	3 cut(s)	366, 367, 464
BssMI	GATC	4 cut(s)	43, 158, 550, 976
Bst2UI	CCWGG	2 cut(s)	228, 465
Bst4CI	ACNGT	3 cut(s)	84, 421, 743
Bst6I	CTCTTC	3 cut(s)	5, 226, 408
BstAPI	GCANNNNNTGC	2 cut(s)	185, 386
BstC8I	GCNNGC	5 cut(s)	177, 181, 391, 588, 708
BstDEI	CTNAG	5 cut(s)	532, 669, 813, 921, 1037
BstF5I	GGATG	4 cut(s)	34, 35, 460, 1009
BstFNI	CGCG	1 cut(s)	973
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	3 cut(s)	543, 856, 973
BstKTI	GATC	4 cut(s)	46, 161, 553, 979
BstMAI	GTCTC	3 cut(s)	410, 651, 879
BstMBI	GATC	4 cut(s)	43, 158, 550, 976
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 386, 782
BstNI	CCWGG	2 cut(s)	228, 465
BstNSI	RCATGY	1 cut(s)	854
BstSCI	CCNGG	4 cut(s)	226, 365, 366, 463
BstSLI	GKGCMC	1 cut(s)	654
BstUI	CGCG	1 cut(s)	973
BstV1I	GCAGC	3 cut(s)	457, 577, 595
BstX2I	RGATCY	2 cut(s)	43, 976
BstYI	RGATCY	2 cut(s)	43, 976
BsuRI	GGCC	1 cut(s)	725
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	4 cut(s)	34, 35, 460, 1009
BveI	ACCTGC	1 cut(s)	976
Cac8I	GCNNGC	5 cut(s)	177, 181, 391, 588, 708
CciI	TCATGA	1 cut(s)	634
CfoI	GCGC	3 cut(s)	543, 856, 973
Cfr9I	CCCGGG	1 cut(s)	366
Csp6I	GTAC	3 cut(s)	808, 1013, 1034
CviAII	CATG	3 cut(s)	635, 727, 851
CviQI	GTAC	3 cut(s)	808, 1013, 1034
DdeI	CTNAG	5 cut(s)	532, 669, 813, 921, 1037
DpnI	GATC	4 cut(s)	45, 160, 552, 978
DpnII	GATC	4 cut(s)	43, 158, 550, 976
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	3 cut(s)	5, 226, 408
EarI	CTCTTC	3 cut(s)	5, 226, 408
EciI	GGCGGA	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	826
Eco57I	CTGAAG	2 cut(s)	422, 545
Eco88I	CYCGRG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	226, 463
EcoRV	GATATC	1 cut(s)	826
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	3 cut(s)	638, 730, 854
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FaqI	GGGAC	2 cut(s)	220, 349
FatI	CATG	3 cut(s)	634, 726, 850
FauI	CCCGC	3 cut(s)	133, 148, 579
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	92, 446, 584, 591
FokI	GGATG	4 cut(s)	22, 41, 447, 1016
Fsp4HI	GCNGC	4 cut(s)	92, 446, 584, 591
FspBI	CTAG	2 cut(s)	95, 617
GlaI	GCGC	3 cut(s)	542, 855, 972
GluI	GCNGC	4 cut(s)	92, 446, 584, 591
GsuI	CTGGAG	1 cut(s)	850
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	2 cut(s)	50, 367
HhaI	GCGC	3 cut(s)	543, 856, 973
Hin1II	CATG	3 cut(s)	638, 730, 854
Hin6I	GCGC	3 cut(s)	541, 854, 971
HinP1I	GCGC	3 cut(s)	541, 854, 971
HindIII	AAGCTT	2 cut(s)	704, 926
HinfI	GANTC	6 cut(s)	149, 397, 497, 887, 908, 953
HpaII	CCGG	2 cut(s)	50, 367
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	6 cut(s)	60, 402, 502, 555, 580, 814
Hpy188III	TCNNGA	5 cut(s)	241, 563, 635, 829, 916
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	1 cut(s)	811
HpyCH4III	ACNGT	3 cut(s)	84, 421, 743
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	7 cut(s)	75, 179, 393, 445, 652, 710, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 386, 782
HpyF3I	CTNAG	5 cut(s)	532, 669, 813, 921, 1037
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	3 cut(s)	638, 730, 854
HspAI	GCGC	3 cut(s)	541, 854, 971
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	4 cut(s)	43, 158, 550, 976
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	457, 577, 595
LweI	GCATC	4 cut(s)	127, 246, 546, 603
MaeI	CTAG	2 cut(s)	95, 617
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	220, 472
MalI	GATC	4 cut(s)	45, 160, 552, 978
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	4 cut(s)	43, 158, 550, 976
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	43, 976
MhlI	GDGCHC	2 cut(s)	533, 654
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	5 cut(s)	76, 324, 748, 957, 1060
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	5 cut(s)	391, 506, 881, 917, 962
MmeI	TCCRAC	1 cut(s)	480
Mox20I	TGGCCA	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	725
Msp20I	TGGCCA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	2 cut(s)	50, 367
MspR9I	CCNGG	4 cut(s)	228, 367, 368, 465
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	996
MvaI	CCWGG	2 cut(s)	228, 465
MvnI	CGCG	1 cut(s)	973
MwoI	GCNNNNNNNGC	3 cut(s)	185, 386, 782
NciI	CCSGG	2 cut(s)	367, 368
NdeII	GATC	4 cut(s)	43, 158, 550, 976
NlaIII	CATG	3 cut(s)	638, 730, 854
NmuCI	GTSAC	2 cut(s)	220, 472
NspI	RCATGY	1 cut(s)	854
PagI	TCATGA	1 cut(s)	634
PctI	GAATGC	1 cut(s)	996
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	93, 447, 585, 592
PleI	GAGTC	5 cut(s)	391, 505, 881, 916, 961
PpsI	GAGTC	5 cut(s)	391, 505, 881, 916, 961
Psp6I	CCWGG	2 cut(s)	226, 463
PspGI	CCWGG	2 cut(s)	226, 463
PsuI	RGATCY	2 cut(s)	43, 976
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	809, 1014, 1035
RsaNI	GTAC	3 cut(s)	808, 1013, 1034
SatI	GCNGC	4 cut(s)	92, 446, 584, 591
Sau3AI	GATC	4 cut(s)	43, 158, 550, 976
ScaI	AGTACT	2 cut(s)	809, 1035
SchI	GAGTC	5 cut(s)	391, 506, 881, 917, 962
ScrFI	CCNGG	4 cut(s)	228, 367, 368, 465
SduI	GDGCHC	2 cut(s)	533, 654
SfaNI	GCATC	4 cut(s)	127, 246, 546, 603
SmaI	CCCGGG	1 cut(s)	368
Sse9I	AATT	5 cut(s)	76, 324, 748, 957, 1060
SsiI	CCGC	8 cut(s)	92, 121, 140, 155, 192, 197, 586, 899
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	2 cut(s)	95, 617
StyD4I	CCNGG	4 cut(s)	226, 365, 366, 463
TaaI	ACNGT	3 cut(s)	84, 421, 743
TaiI	ACGT	1 cut(s)	334
TaqII	GACCGA	1 cut(s)	901
TasI	AATT	5 cut(s)	76, 324, 748, 957, 1060
TatI	WGTACW	2 cut(s)	807, 1033
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	149
TseFI	GTSAC	2 cut(s)	220, 472
TseI	GCWGC	3 cut(s)	445, 583, 590
Tsp45I	GTSAC	2 cut(s)	220, 472
TspDTI	ATGAA	4 cut(s)	162, 413, 500, 1044
TspGWI	ACGGA	1 cut(s)	1030
TspMI	CCCGGG	1 cut(s)	366
Tth111I	GACNNNGTC	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	650
XapI	RAATTY	2 cut(s)	748, 1060
XceI	RCATGY	1 cut(s)	854
XmaI	CCCGGG	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	2 cut(s)	95, 617
ZrmI	AGTACT	2 cut(s)	809, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.