Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012053

Physical Location & Seq

Genomic Coordinates Reverse (-)

4355926 .. 4358894

Gene Structure 2969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTTCTTCTGTGGAGCAGAACATTCTTGTTACTGGTGGTGCTGGCTTTATCGGGACGCATACTGTTGTTCAACTTCTCAAAGATGGTTTTAAGGTTTCGATCATCGATAATTTTGATAACTCTGTTATCGAAGCTGTTGATAGAGTTAGGGAGCTTGTTGGTCCTGATCTCTCCAAGAAGCTCGACTTCAATCTGGGTGATCTAAGAAACAAAGGGGACATTGAGAAACTATTCTCCAAGCAGAGATTTGATGCTGTGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGAAAACCCTCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTATATGAGACCATGGCAAAGTACAACTGCAAAATGATGGTGTTTTCATCTTCTGCCACTGTTTATGGACAACCTGAAAAGATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTATGGTCGTACTAAGCTCTTTCTTGAAGAAATAGCTAGAGATATTCAAAAGGCAGAACCGGAATGGAGAATTATTCTGCTGAGGTACTTCAATCCTGTAGGAGCACATGAGAGTGGCAGTATTGGTGAGGATCCAAAAGGCATCCCCAATAACCTCATGCCTTACATCCAACAAGTGGCCGTTGGACGTTTACCGGAACTCAATGTCTATGGACATGACTATCCCACCGAGGATGGTAGTGCGGTAAGAGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAGCTATTTGCTGATCCAAAGATTGGTTGTACTGCTTACAATCTAGGGACTGGTCAAGGAACGTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAGAAAATCCCGATTAAGCTCTGTCCGAGAAGGTCAGGAGATGCAACAGCAGTTTATGCTTCAACAGAGAAGGCTGAGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGAAATGGGCAAACAATAATCCATGGGGTTACCAGAATAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0016020 GO:0016853 GO:0016854 GO:0016857 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0050373 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

351

Amino Acids

39.16

Weight (kDa)

6.14

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	8 - 171	3.2e-09	RmlD substrate binding domain
adh_short	PF00106	8 - 124	9.1e-08	short chain dehydrogenase
Epimerase	PF01370	9 - 273	1.2e-53	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	9 - 193	3e-15	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	10 - 335	1e-63	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	10 - 163	8.9e-13	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12780 AT1G63180 AT1G63180
fragaria_vesca	FvH4_5g01780 FvH4_5g01780
malus_domestica	MD04G1064600.v1.1
prunus_persica	Prupe.5G093300_v2.0.a1 Prupe.5G093300_v2.0.a1
pyrus_communis	pycom04g05840
rosa_chinensis	RchiOBHm_Chr7g0198901
rosa_laevigata	RLG00000003834
rosa_multiflora	Rmu_sc0016854.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257320
rosa_rugosa	Rorug07G0050500 Rorug07G0050600
rosa_samantha	Rh7BG177400 Rh7CG183400 Rh7DG176800
rosa_wichuraiana	Rw7G015260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	646, 736, 794
AciI	CCGC	3 cut(s)	272, 313, 713
AclWI	GGATC	3 cut(s)	596, 609, 779
AcoI	YGGCCR	2 cut(s)	648, 751
AfaI	GTAC	4 cut(s)	371, 481, 557, 802
AfiI	CCNNNNNNNGG	3 cut(s)	646, 736, 794
AgsI	TTSAA	9 cut(s)	74, 193, 302, 452, 497, 518, 562, 863, 939
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	2 cut(s)	350, 714
AlwI	GGATC	3 cut(s)	596, 609, 779
AoxI	GGCC	2 cut(s)	648, 751
ApeKI	GCWGC	2 cut(s)	761, 854
Asp700I	GAANNNNTTC	2 cut(s)	233, 429
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	212, 302, 608
AvaII	GGWCC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	577
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	748, 866
BccI	CCATC	5 cut(s)	80, 379, 698, 730, 743
BceAI	ACGGC	1 cut(s)	635
BcoDI	GTCTC	2 cut(s)	350, 714
BfaI	CTAG	2 cut(s)	507, 815
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	3 cut(s)	313, 762, 855
BlsI	GCNGC	3 cut(s)	314, 763, 856
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	603
BmsI	GCATC	3 cut(s)	244, 621, 907
BpiI	GAAGAC	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	551, 767
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	360, 699, 1031
BsaWI	WCCGGW	2 cut(s)	529, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	646, 736, 794
Bse1I	ACTGG	2 cut(s)	40, 826
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	360, 699, 1031
BseGI	GGATG	5 cut(s)	612, 636, 709, 726, 994
BseLI	CCNNNNNNNGG	3 cut(s)	646, 736, 794
BseMII	CTCAG	3 cut(s)	542, 781, 942
BseNI	ACTGG	2 cut(s)	40, 826
BseXI	GCAGC	2 cut(s)	748, 866
BsgI	GTGCAG	1 cut(s)	1018
BshFI	GGCC	2 cut(s)	650, 753
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	3 cut(s)	530, 665, 873
BslFI	GGGAC	3 cut(s)	70, 233, 832
BslI	CCNNNNNNNGG	3 cut(s)	646, 736, 794
BsmAI	GTCTC	2 cut(s)	350, 714
BsmFI	GGGAC	3 cut(s)	70, 233, 832
BsnI	GGCC	2 cut(s)	650, 753
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
Bsp19I	CCATGG	2 cut(s)	360, 1031
BspACI	CCGC	3 cut(s)	272, 313, 713
BspANI	GGCC	2 cut(s)	650, 753
BspCNI	CTCAG	3 cut(s)	543, 780, 943
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	603
BspPI	GGATC	3 cut(s)	596, 609, 779
BspTNI	GGTCTC	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	40, 826
BssECI	CCNNGG	3 cut(s)	360, 699, 1031
BssMI	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
BssT1I	CCWWGG	2 cut(s)	360, 1031
Bst4CI	ACNGT	2 cut(s)	67, 409
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	5 cut(s)	206, 483, 551, 767, 951
BstDSI	CCRYGG	2 cut(s)	360, 1031
BstEII	GGTNACC	1 cut(s)	1037
BstF5I	GGATG	5 cut(s)	612, 636, 709, 726, 994
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	6 cut(s)	105, 172, 205, 604, 787, 1006
BstMAI	GTCTC	2 cut(s)	350, 714
BstMBI	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	772, 932
BstPI	GGTNACC	1 cut(s)	1037
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	748, 866
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	650, 753
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	2 cut(s)	360, 1031
BtsCI	GGATG	5 cut(s)	612, 636, 709, 726, 994
BtsIMutI	CAGTG	2 cut(s)	405, 1013
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	766
Cfr13I	GGNCC	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	370, 480, 556, 801
CviAII	CATG	8 cut(s)	361, 435, 439, 578, 628, 686, 731, 1032
CviQI	GTAC	4 cut(s)	370, 480, 556, 801
DdeI	CTNAG	5 cut(s)	206, 483, 551, 767, 951
DpnI	GATC	6 cut(s)	104, 171, 204, 603, 786, 1005
DpnII	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
EaeI	YGGCCR	2 cut(s)	648, 751
Eco130I	CCWWGG	2 cut(s)	360, 1031
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	1037
EcoO65I	GGTNACC	1 cut(s)	1037
EcoT14I	CCWWGG	2 cut(s)	360, 1031
EcoT22I	ATGCAT	1 cut(s)	440
ErhI	CCWWGG	2 cut(s)	360, 1031
FaeI	CATG	8 cut(s)	364, 438, 442, 581, 631, 689, 734, 1035
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	3 cut(s)	70, 233, 832
FatI	CATG	8 cut(s)	360, 434, 438, 577, 627, 685, 730, 1031
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	313, 762, 855
FokI	GGATG	5 cut(s)	599, 623, 713, 716, 1001
Fsp4HI	GCNGC	3 cut(s)	313, 762, 855
FspBI	CTAG	2 cut(s)	507, 815
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	3 cut(s)	313, 762, 855
HaeIII	GGCC	2 cut(s)	650, 753
HapII	CCGG	3 cut(s)	530, 665, 873
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	8 cut(s)	364, 438, 442, 581, 631, 689, 734, 1035
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HindIII	AAGCTT	2 cut(s)	867, 1049
HinfI	GANTC	3 cut(s)	262, 430, 466
HpaII	CCGG	3 cut(s)	530, 665, 873
HphI	GGTGA	3 cut(s)	212, 302, 608
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	1 cut(s)	903
Hpy188III	TCNNGA	6 cut(s)	55, 167, 494, 769, 886, 912
Hpy8I	GTNNAC	1 cut(s)	662
HpyAV	CCTTC	3 cut(s)	900, 940, 964
HpyCH4III	ACNGT	2 cut(s)	67, 409
HpyCH4IV	ACGT	2 cut(s)	658, 833
HpyCH4V	TGCA	5 cut(s)	378, 438, 854, 920, 999
HpyF10VI	GCNNNNNNNGC	2 cut(s)	772, 932
HpyF3I	CTNAG	5 cut(s)	206, 483, 551, 767, 951
HpySE526I	ACGT	2 cut(s)	658, 833
Hsp92II	CATG	8 cut(s)	364, 438, 442, 581, 631, 689, 734, 1035
HspAI	GCGC	1 cut(s)	764
Kzo9I	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
LmnI	GCTCC	3 cut(s)	16, 154, 572
Lsp1109I	GCAGC	2 cut(s)	748, 866
LweI	GCATC	3 cut(s)	244, 621, 907
MaeI	CTAG	2 cut(s)	507, 815
MaeII	ACGT	2 cut(s)	658, 833
MaeIII	GTNAC	2 cut(s)	31, 1037
MalI	GATC	6 cut(s)	104, 171, 204, 603, 786, 1005
MboI	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
MboII	GAAGA	3 cut(s)	390, 455, 509
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	577
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	3 cut(s)	112, 452, 540
MluNI	TGGCCA	1 cut(s)	753
MmeI	TCCRAC	3 cut(s)	316, 634, 664
MnlI	CCTC	5 cut(s)	318, 546, 592, 635, 694
Mox20I	TGGCCA	1 cut(s)	753
Mph1103I	ATGCAT	1 cut(s)	440
MroXI	GAANNNNTTC	2 cut(s)	233, 429
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	4 cut(s)	93, 279, 455, 891
MslI	CAYNNNNRTG	2 cut(s)	582, 731
Msp20I	TGGCCA	1 cut(s)	753
MspI	CCGG	3 cut(s)	530, 665, 873
MwoI	GCNNNNNNNGC	2 cut(s)	772, 932
NcoI	CCATGG	2 cut(s)	360, 1031
NdeII	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
NlaIII	CATG	8 cut(s)	364, 438, 442, 581, 631, 689, 734, 1035
NlaIV	GGNNCC	1 cut(s)	603
NsiI	ATGCAT	1 cut(s)	440
PdmI	GAANNNNTTC	2 cut(s)	233, 429
PfeI	GAWTC	3 cut(s)	262, 430, 466
PflMI	CCANNNNNTGG	3 cut(s)	646, 736, 794
PkrI	GCNGC	3 cut(s)	314, 763, 856
PspEI	GGTNACC	1 cut(s)	1037
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	4 cut(s)	371, 481, 557, 802
RsaNI	GTAC	4 cut(s)	370, 480, 556, 801
RseI	CAYNNNNRTG	2 cut(s)	582, 731
SaqAI	TTAA	4 cut(s)	93, 279, 455, 891
SatI	GCNGC	3 cut(s)	313, 762, 855
Sau3AI	GATC	6 cut(s)	102, 169, 202, 601, 784, 1003
Sau96I	GGNCC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	3 cut(s)	244, 621, 907
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	582, 731
Sse9I	AATT	3 cut(s)	112, 452, 540
SsiI	CCGC	3 cut(s)	272, 313, 713
SspMI	CTAG	2 cut(s)	507, 815
StyI	CCWWGG	2 cut(s)	360, 1031
TaaI	ACNGT	2 cut(s)	67, 409
TaiI	ACGT	2 cut(s)	661, 836
TaqI	TCGA	4 cut(s)	101, 108, 132, 186
TasI	AATT	3 cut(s)	112, 452, 540
TatI	WGTACW	2 cut(s)	369, 800
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	262, 430, 466
Tru1I	TTAA	4 cut(s)	93, 279, 455, 891
Tru9I	TTAA	4 cut(s)	93, 279, 455, 891
TscAI	CASTG	2 cut(s)	412, 1013
TseI	GCWGC	2 cut(s)	761, 854
TspDTI	ATGAA	3 cut(s)	254, 384, 479
TspRI	CASTG	2 cut(s)	412, 1013
Van91I	CCANNNNNTGG	3 cut(s)	646, 736, 794
VpaK11BI	GGWCC	1 cut(s)	164
XmnI	GAANNNNTTC	2 cut(s)	233, 429
XspI	CTAG	2 cut(s)	507, 815
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.