Rorug07G0050600

bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012053
Physical Location & Seq
Forward (+)
3631262 .. 3632580
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0050600.1

Sequence Viewer

Length: 489 bp
ATGCTGAGTCTCAGCAGCACTCAGTCCATGAAAGAGCAGAAATTCGAGAGCTACTTTGGCCGCAACATTGCCATCGATGCCAGCATGAGCATTTATCAGTTCCTCATTGTTGTGGGAAGAACTGGGACTGAGATGCTCACTAATGAGGCTGGTGAAGTTACTAGTCATCTCCAAGGCATGTTTTCGCGGACTATTAGGCTTCTGGAAGCTGGAATTAAGCCGCTATGTTTTCGATGGGAAGCCTCCAGAATTGAAAAGCCACGAGCTGGCAAAGGGTCTGGCAATAAGGAAGACATTGAGAAATTCAGTAAACGGACAGTAAAGGTGACAAAGCAGCACAATGAAGACTGCAGAAGACTTTTATGGCTCATGGGTGTGCCTGTAATTGAGGCTCCCTCGGAAGCAGAGGCGCAGTGTGCTGTGCTTTGCAAGGAAGGAAAGGCACCTGTATACACCATAACACCCAGAACGAGCCATTTTTTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00520 ko01100 map00052 map00520 map01100
Pfam Domains
Protein Families
GDP_Man_Dehyd

Protein Analysis

162

Amino Acids

18.2

Weight (kDa)

9.12

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 4 - 75 3.9e-14 XPG N-terminal domain
XPG_I PF00867 125 - 148 4e-07 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12780 AT1G63180 AT1G63180
fragaria_vesca FvH4_5g01780 FvH4_5g01780
malus_domestica MD04G1064600.v1.1
prunus_persica Prupe.5G093300_v2.0.a1 Prupe.5G093300_v2.0.a1
pyrus_communis pycom04g05840
rosa_chinensis RchiOBHm_Chr7g0198901
rosa_laevigata RLG00000003834
rosa_multiflora Rmu_sc0016854.1_g000005
rosa_roxburghii Rroxscaffold_3G00257320
rosa_rugosa Rorug07G0050500 Rorug07G0050600
rosa_samantha Rh7BG177400 Rh7CG183400 Rh7DG176800
rosa_wichuraiana Rw7G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 2 cut(s) 266, 481
AccI GTMKAC 1 cut(s) 450
AccII CGCG 1 cut(s) 187
AciI CCGC 3 cut(s) 61, 187, 221
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 41, 302
AfiI CCNNNNNNNGG 2 cut(s) 266, 481
AgsI TTSAA 1 cut(s) 254
AhlI ACTAGT 1 cut(s) 161
AluBI AGCT 3 cut(s) 51, 209, 266
AluI AGCT 3 cut(s) 51, 209, 266
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 15, 334
ApoI RAATTY 2 cut(s) 41, 302
AspLEI GCGC 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 164, 337
BanI GGYRCC 1 cut(s) 442
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 3 cut(s) 297, 351, 361
BbvI GCAGC 2 cut(s) 27, 346
BccI CCATC 2 cut(s) 80, 228
BcoDI GTCTC 1 cut(s) 14
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 349
BisI GCNGC 4 cut(s) 16, 61, 221, 335
BlsI GCNGC 4 cut(s) 17, 62, 222, 336
BmiI GGNNCC 2 cut(s) 393, 444
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 67, 123
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 3 cut(s) 297, 351, 361
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 172, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 481
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 172, 396
BseLI CCNNNNNNNGG 2 cut(s) 266, 481
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 25, 35, 120
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 27, 346
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 442
BshVI ATCGAT 1 cut(s) 75
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 266, 481
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 60
BspACI CCGC 3 cut(s) 61, 187, 221
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 3 cut(s) 24, 34, 121
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 393, 444
BspMAI CTGCAG 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 172, 396
BssNAI GTATAC 1 cut(s) 451
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 172
Bst1107I GTATAC 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 82, 268
BstDEI CTNAG 4 cut(s) 5, 11, 21, 129
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 14
BstMWI GCNNNNNNNGC 3 cut(s) 57, 77, 416
BstNSI RCATGY 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 27, 346
BstV2I GAAGAC 3 cut(s) 297, 351, 361
BstZ17I GTATAC 1 cut(s) 451
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 82, 268
CfoI GCGC 1 cut(s) 412
ClaI ATCGAT 1 cut(s) 75
CviAII CATG 4 cut(s) 28, 85, 178, 370
DdeI CTNAG 4 cut(s) 5, 11, 21, 129
EaeI YGGCCR 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 4 cut(s) 31, 88, 181, 373
FaiI YATR 8 cut(s) 29, 86, 179, 226, 364, 371, 451, 458
FaqI GGGAC 1 cut(s) 139
FatI CATG 4 cut(s) 27, 84, 177, 369
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 16, 61, 221, 335
Fsp4HI GCNGC 4 cut(s) 16, 61, 221, 335
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 411
GluI GCNGC 4 cut(s) 16, 61, 221, 335
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 1 cut(s) 412
Hin1II CATG 4 cut(s) 31, 88, 181, 373
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 1 cut(s) 7
HphI GGTGA 2 cut(s) 164, 337
Hpy166II GTNNAC 2 cut(s) 311, 451
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 3 cut(s) 46, 203, 246
Hpy8I GTNNAC 2 cut(s) 311, 451
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 351, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 77, 416
HpyF3I CTNAG 4 cut(s) 5, 11, 21, 129
Hsp92II CATG 4 cut(s) 31, 88, 181, 373
HspAI GCGC 1 cut(s) 410
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 2 cut(s) 27, 346
LweI GCATC 2 cut(s) 67, 123
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 157, 325
MboII GAAGA 4 cut(s) 129, 302, 356, 366
MluCI AATT 5 cut(s) 41, 213, 249, 302, 384
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 6 cut(s) 113, 139, 253, 382, 400, 406
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 110, 374
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 57, 77, 416
NlaIII CATG 4 cut(s) 31, 88, 181, 373
NlaIV GGNNCC 2 cut(s) 393, 444
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 181
PflMI CCANNNNNTGG 2 cut(s) 266, 481
PkrI GCNGC 4 cut(s) 17, 62, 222, 336
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 393, 444
PstI CTGCAG 1 cut(s) 353
RseI CAYNNNNRTG 2 cut(s) 110, 374
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 4 cut(s) 16, 61, 221, 335
SchI GAGTC 1 cut(s) 16
SetI ASST 5 cut(s) 53, 211, 268, 327, 448
SfaNI GCATC 2 cut(s) 67, 123
SfcI CTRYAG 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 110, 374
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 5 cut(s) 41, 213, 249, 302, 384
SsiI CCGC 3 cut(s) 61, 187, 221
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 45, 75, 232
TasI AATT 5 cut(s) 41, 213, 249, 302, 384
TauI GCSGC 2 cut(s) 63, 223
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 15, 334
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 44, 357
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 419
Van91I CCANNNNNTGG 2 cut(s) 266, 481
XapI RAATTY 2 cut(s) 41, 302
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.