Prupe.5G093300_v2.0.a1

bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012053
Physical Location & Seq
Reverse (-)
10334631 .. 10337874
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G093300.2

Sequence Viewer

Length: 1053 bp
ATGGGGTCAATGGAGCAGACGATTCTGGTGACCGGCGGGGCGGGGTTTATTGGGAGCCACACGGTGGTTCAGCTTCTCGAAGCAGGGTTTAGGGTTTCCATCCTTGATAATCTTGACAATTCCGTCATTGAAGCTGTTGATCGCGTTCGGGACTTGGTCGGCCCTAAGCTCTCTCAGAAGCTCCACTTTCATTTGGGTGATCTCAGAAATAAGGACGATTTGGAGAGGCTGTTTTCTCAAACAAAATTTGATGCTGTGATCCACTTTGCTGGCCTGAAAGCTGTAGGAGAGAGTGTTGCTCACCCACGCCGTTATTATGATAATAATTTGGTTGGCACTATTAATCTCTATGAGATCATGACAAAATACAATTGTAAAAAGATGGTTTTCTCATCATCTGCAACTGTTTACGGGCAACCTTCAAAAATTCCTTGTGTTGAGGATTTTGACCTTGTAGCTTTGAATCCATATGGCCGTACAAAGCTTTTCCTTGAAGAAATTGCTCGAGATATACACATAGCAGACCCAGATTGGCAAATTATTCTACTGAGGTACTTCAACCCTGTCGGGGCTCATGAGAGTGGGCAAATTGGTGAAGATCCCAAAGGCATCCCAAACAACCTCATGCCTTACATACAGCAAGTAGCTGTTGGAAGATTGCCTGAGCTTAATGTTTATGGTCATGATTATCCCACCAAGGATGGTACTGCGATCAGAGACTACATTCATGTTATGGACTTGGCGGATGGTCATATTGCTGCTCTTCAGAAGCTTTTTACTACAGAGAATCTAGGATGTGTTGCCTACAACCTGGGAACCGGACAAGGTACGTCAGTGCTTCAAATGGTTGCTGGCTTCGAGAAGGCTTCTGGCAAGAAAATCCCCATCAAACTATGCCCAAGGAGGCCGGGAGATGCTACTGCTGTTTATGCTTCAACAGAGAAAGCTGAAAGGGAACTCGGGTGGAAGGCAAAATACGGAATAGACGATATGTGCAGGGACCAATGGAAGTGGGCGGTAAACAATCCACGAGGTTACCAGTCCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00520 ko01100 map00052 map00520 map01100
Pfam Domains
Protein Families
GDP_Man_Dehyd

Protein Analysis

351

Amino Acids

39.0

Weight (kDa)

6.56

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12780 AT1G63180 AT1G63180
fragaria_vesca FvH4_5g01780 FvH4_5g01780
malus_domestica MD04G1064600.v1.1
prunus_persica Prupe.5G093300_v2.0.a1 Prupe.5G093300_v2.0.a1
pyrus_communis pycom04g05840
rosa_chinensis RchiOBHm_Chr7g0198901
rosa_laevigata RLG00000003834
rosa_multiflora Rmu_sc0016854.1_g000005
rosa_roxburghii Rroxscaffold_3G00257320
rosa_rugosa Rorug07G0050500 Rorug07G0050600
rosa_samantha Rh7BG177400 Rh7CG183400 Rh7DG176800
rosa_wichuraiana Rw7G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 64
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 36, 41, 743, 1016
AclWI GGATC 2 cut(s) 253, 593
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 2 cut(s) 245, 426
AcuI CTGAAG 1 cut(s) 749
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 4 cut(s) 478, 554, 706, 829
AfiI CCNNNNNNNGG 2 cut(s) 64, 568
AgsI TTSAA 7 cut(s) 131, 423, 463, 494, 559, 842, 936
AjnI CCWGG 1 cut(s) 810
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 2 cut(s) 253, 593
Ama87I CYCGRG 2 cut(s) 504, 959
AoxI GGCC 4 cut(s) 160, 271, 472, 905
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 2 cut(s) 245, 426
AseI ATTAAT 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 161, 1000
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 4 cut(s) 40, 209, 293, 605
AvaI CYCGRG 2 cut(s) 504, 959
AvaII GGWCC 1 cut(s) 1000
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BanII GRGCYC 1 cut(s) 574
BarI GAAGNNNNNNTAC 2 cut(s) 959, 991
BauI CACGAG 1 cut(s) 1029
BbvI GCAGC 1 cut(s) 745
BccI CCATC 5 cut(s) 107, 376, 695, 740, 893
BceAI ACGGC 2 cut(s) 294, 459
BciT130I CCWGG 1 cut(s) 812
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 1 cut(s) 791
BfmI CTRYAG 2 cut(s) 282, 780
BisI GCNGC 1 cut(s) 759
BlsI GCNGC 1 cut(s) 760
Bme1390I CCNGG 2 cut(s) 812, 909
Bme18I GGWCC 1 cut(s) 1000
BmeT110I CYCGRG 2 cut(s) 504, 959
BmgT120I GGNCC 2 cut(s) 161, 1000
BmiI GGNNCC 3 cut(s) 56, 817, 1001
BmrFI CCNGG 2 cut(s) 812, 909
BmsI GCATC 3 cut(s) 241, 618, 904
BplI GAGNNNNNCTC 2 cut(s) 283, 315
Bpu10I CCTNAGC 2 cut(s) 165, 663
BpuMI CCSGG 1 cut(s) 909
BsaJI CCNNGG 3 cut(s) 696, 811, 899
BsaWI WCCGGW 1 cut(s) 818
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 568
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 1039
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 3 cut(s) 696, 811, 899
BseGI GGATG 5 cut(s) 99, 609, 706, 751, 800
BseLI CCNNNNNNNGG 2 cut(s) 64, 568
BseMII CTCAG 4 cut(s) 188, 217, 539, 654
BseNI ACTGG 1 cut(s) 1039
BseXI GCAGC 1 cut(s) 745
BsgI GTGCAG 1 cut(s) 1015
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 162, 273, 474, 907
BsiHKCI CYCGRG 2 cut(s) 504, 959
BsiSI CCGG 3 cut(s) 33, 819, 908
BslFI GGGAC 2 cut(s) 164, 1013
BslI CCNNNNNNNGG 2 cut(s) 64, 568
BsmAI GTCTC 1 cut(s) 711
BsmFI GGGAC 2 cut(s) 164, 1013
BsnI GGCC 4 cut(s) 162, 273, 474, 907
BsoBI CYCGRG 2 cut(s) 504, 959
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 6 cut(s) 139, 199, 258, 354, 598, 711
BspACI CCGC 4 cut(s) 36, 41, 743, 1016
BspANI GGCC 4 cut(s) 162, 273, 474, 907
BspCNI CTCAG 4 cut(s) 187, 216, 540, 655
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 3 cut(s) 357, 574, 682
BspLI GGNNCC 3 cut(s) 56, 817, 1001
BspPI GGATC 2 cut(s) 253, 593
BspQI GCTCTTC 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 1039
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 696, 811, 899
BssMI GATC 6 cut(s) 139, 199, 258, 354, 598, 711
BssSI CACGAG 1 cut(s) 1029
BssT1I CCWWGG 2 cut(s) 696, 899
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 2 cut(s) 64, 406
Bst6I CTCTTC 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 271, 853
BstDEI CTNAG 5 cut(s) 165, 174, 203, 548, 663
BstEII GGTNACC 2 cut(s) 28, 1034
BstF5I GGATG 5 cut(s) 99, 609, 706, 751, 800
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 6 cut(s) 142, 202, 261, 357, 601, 714
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 6 cut(s) 139, 199, 258, 354, 598, 711
BstMWI GCNNNNNNNGC 1 cut(s) 929
BstNI CCWGG 1 cut(s) 812
BstPI GGTNACC 2 cut(s) 28, 1034
BstSCI CCNGG 2 cut(s) 810, 907
BstSFI CTRYAG 2 cut(s) 282, 780
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 745
BstX2I RGATCY 1 cut(s) 598
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 4 cut(s) 162, 273, 474, 907
BtsCI GGATG 5 cut(s) 99, 609, 706, 751, 800
BtsIMutI CAGTG 1 cut(s) 840
Cac8I GCNNGC 2 cut(s) 271, 853
CciI TCATGA 3 cut(s) 357, 574, 682
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 161, 1000
Csp6I GTAC 4 cut(s) 477, 553, 705, 828
CspCI CAANNNNNGTGG 2 cut(s) 992, 1027
CviAII CATG 5 cut(s) 358, 575, 625, 683, 728
CviQI GTAC 4 cut(s) 477, 553, 705, 828
DdeI CTNAG 5 cut(s) 165, 174, 203, 548, 663
DpnI GATC 6 cut(s) 141, 201, 260, 356, 600, 713
DpnII GATC 6 cut(s) 139, 199, 258, 354, 598, 711
DraIII CACNNNGTG 1 cut(s) 64
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
EciI GGCGGA 1 cut(s) 758
Eco130I CCWWGG 2 cut(s) 696, 899
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 749
Eco88I CYCGRG 2 cut(s) 504, 959
Eco91I GGTNACC 2 cut(s) 28, 1034
EcoO65I GGTNACC 2 cut(s) 28, 1034
EcoRII CCWGG 1 cut(s) 810
EcoT14I CCWWGG 2 cut(s) 696, 899
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 696, 899
FaeI CATG 5 cut(s) 361, 578, 628, 686, 731
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 2 cut(s) 164, 1013
FatI CATG 5 cut(s) 357, 574, 624, 682, 727
FauI CCCGC 2 cut(s) 29, 34
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 759
FokI GGATG 5 cut(s) 86, 596, 713, 758, 807
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 1 cut(s) 759
FspBI CTAG 1 cut(s) 791
GluI GCNGC 1 cut(s) 759
HaeIII GGCC 4 cut(s) 162, 273, 474, 907
HapII CCGG 3 cut(s) 33, 819, 908
Hin1II CATG 5 cut(s) 361, 578, 628, 686, 731
HindIII AAGCTT 2 cut(s) 482, 770
HinfI GANTC 3 cut(s) 22, 463, 787
HpaII CCGG 3 cut(s) 33, 819, 908
HphI GGTGA 4 cut(s) 40, 209, 293, 605
Hpy166II GTNNAC 2 cut(s) 409, 1021
Hpy188I TCNGA 4 cut(s) 177, 206, 716, 768
Hpy188III TCNNGA 8 cut(s) 77, 113, 149, 358, 506, 575, 683, 859
Hpy8I GTNNAC 2 cut(s) 409, 1021
HpyAV CCTTC 3 cut(s) 429, 856, 961
HpyCH4III ACNGT 2 cut(s) 64, 406
HpyCH4IV ACGT 1 cut(s) 830
HpyCH4V TGCA 2 cut(s) 401, 996
HpyF10VI GCNNNNNNNGC 1 cut(s) 929
HpyF3I CTNAG 5 cut(s) 165, 174, 203, 548, 663
HpySE526I ACGT 1 cut(s) 830
Hsp92II CATG 5 cut(s) 361, 578, 628, 686, 731
Kzo9I GATC 6 cut(s) 139, 199, 258, 354, 598, 711
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 3 cut(s) 13, 54, 186
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 3 cut(s) 241, 618, 904
MaeI CTAG 1 cut(s) 791
MaeII ACGT 1 cut(s) 830
MaeIII GTNAC 2 cut(s) 28, 1034
MalI GATC 6 cut(s) 141, 201, 260, 356, 600, 713
MboI GATC 6 cut(s) 139, 199, 258, 354, 598, 711
MboII GAAGA 4 cut(s) 506, 608, 666, 755
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 8 cut(s) 118, 245, 325, 370, 426, 498, 537, 588
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 6 cut(s) 219, 433, 543, 632, 897, 1025
MseI TTAA 2 cut(s) 342, 669
MslI CAYNNNNRTG 2 cut(s) 195, 579
MspI CCGG 3 cut(s) 33, 819, 908
MspR9I CCNGG 2 cut(s) 812, 909
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 1 cut(s) 812
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 929
NciI CCSGG 1 cut(s) 909
NdeI CATATG 1 cut(s) 469
NdeII GATC 6 cut(s) 139, 199, 258, 354, 598, 711
NlaIII CATG 5 cut(s) 361, 578, 628, 686, 731
NlaIV GGNNCC 3 cut(s) 56, 817, 1001
NmuCI GTSAC 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 504
PagI TCATGA 3 cut(s) 357, 574, 682
PciSI GCTCTTC 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 984
PfeI GAWTC 3 cut(s) 22, 463, 787
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 1 cut(s) 760
PshBI ATTAAT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 810
PspEI GGTNACC 2 cut(s) 28, 1034
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 3 cut(s) 56, 817, 1001
PspPI GGNCC 2 cut(s) 161, 1000
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 4 cut(s) 478, 554, 706, 829
RsaNI GTAC 4 cut(s) 477, 553, 705, 828
RseI CAYNNNNRTG 2 cut(s) 195, 579
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 2 cut(s) 342, 669
SatI GCNGC 1 cut(s) 759
Sau3AI GATC 6 cut(s) 139, 199, 258, 354, 598, 711
Sau96I GGNCC 2 cut(s) 161, 1000
ScrFI CCNGG 2 cut(s) 812, 909
SduI GDGCHC 1 cut(s) 574
SfaNI GCATC 3 cut(s) 241, 618, 904
SfcI CTRYAG 2 cut(s) 282, 780
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 1000
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 195, 579
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 8 cut(s) 118, 245, 325, 370, 426, 498, 537, 588
SsiI CCGC 4 cut(s) 36, 41, 743, 1016
SspMI CTAG 1 cut(s) 791
StyD4I CCNGG 2 cut(s) 810, 907
StyI CCWWGG 2 cut(s) 696, 899
TaaI ACNGT 2 cut(s) 64, 406
TaiI ACGT 1 cut(s) 833
TaqI TCGA 3 cut(s) 78, 505, 858
TasI AATT 8 cut(s) 118, 245, 325, 370, 426, 498, 537, 588
TfiI GAWTC 3 cut(s) 22, 463, 787
Tru1I TTAA 2 cut(s) 342, 669
Tru9I TTAA 2 cut(s) 342, 669
TscAI CASTG 1 cut(s) 840
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 758
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 179, 716
TspGWI ACGGA 2 cut(s) 112, 993
TspRI CASTG 1 cut(s) 840
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 1000
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 2 cut(s) 245, 426
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.