Rmu_sc0016854.1_g000005

bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016854.1
OG0012053
Physical Location & Seq
Reverse (-)
7455 .. 12326
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016854.1_g000005.1.cds

Sequence Viewer

Length: 1167 bp
atggggtcgatcgagcagacgattctggtgaccggcggcgcggggttcatcggcagccacacggcggtgcagctactcaacgagggcttcagggttgtcatctttgataatcttgataactcctctgttgaagctgttcatagggtcagggacttggtcgggcccaagctctctcagaagcttcaatttcacttgggtgatctcagaaataaagaggagttggacaagctgttttctcaaaccaagtttgatgctgtgatccattttgctgggctgaaagccgtaggggagagtgttgcacacccacgccgctattttgataacaatttgattggaactctgaatctttataatatcatggcaaaatacaattgcaaaaagatggttttctcttcatctgcaactgtttatggccaacctgaaaaaattccttgtgttgaggattttgaccttgtagctctgaatccatatggccgtaccaagcttttcctcgaagaaattgctcgagatattcacagggcagaaccagattggggaattattcttctgaggtatttcaaccccgttggggctcatgagagtggtaaaattggtgaagatcctaaaggcataccaaacaatcttatgccttacatacagcaagtagctgttggaagattgcctgagcttaatgtttatggtcatgactatcccaccagggatggtactgcgatccgagactacatccatgtgatggacttagcagatggccatattgctgctcttcagaagctttttactacagagaatacaggttgtattgcctacaacctgggaactggacaaggtacatccgtgctcgaaatggttgctgcctttgagaaggcttctggcaagaaaatccctatcaaactatgttcgcggaggccaggagatgctactgctgtttatgcttcaactgagaaagctagaagggaacttggatggaaggcaaaatacggagtggaggagatgtgcagggaccaatggaattgggcagtaaacaatccatggggttacggtctagagtttgaatctcagctccatcctgtggtcagcagatttgagggacctatgttgattaaacaccaagattcatgcgtctgcggtgcagtgattagtccggctatgctgggatacactgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00520 ko01100 map00052 map00520 map01100
Pfam Domains
Protein Families
GDP_Man_Dehyd

Protein Analysis

388

Amino Acids

43.08

Weight (kDa)

6.47

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12780 AT1G63180 AT1G63180
fragaria_vesca FvH4_5g01780 FvH4_5g01780
malus_domestica MD04G1064600.v1.1
prunus_persica Prupe.5G093300_v2.0.a1 Prupe.5G093300_v2.0.a1
pyrus_communis pycom04g05840
rosa_chinensis RchiOBHm_Chr7g0198901
rosa_laevigata RLG00000003834
rosa_multiflora Rmu_sc0016854.1_g000005
rosa_roxburghii Rroxscaffold_3G00257320
rosa_rugosa Rorug07G0050500 Rorug07G0050600
rosa_samantha Rh7BG177400 Rh7CG183400 Rh7DG176800
rosa_wichuraiana Rw7G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccB7I CCANNNNNTGG 2 cut(s) 733, 1069
AccII CGCG 2 cut(s) 41, 901
AciI CCGC 6 cut(s) 36, 41, 65, 310, 901, 1125
AclWI GGATC 3 cut(s) 253, 593, 706
AcoI YGGCCR 3 cut(s) 412, 472, 748
AcsI RAATTY 1 cut(s) 426
AcuI CTGAAG 2 cut(s) 73, 749
AfaI GTAC 3 cut(s) 478, 706, 829
AfiI CCNNNNNNNGG 5 cut(s) 64, 533, 568, 733, 1069
AgsI TTSAA 5 cut(s) 131, 185, 559, 936, 1052
AjnI CCWGG 3 cut(s) 695, 810, 907
AleI CACNNNNGTG 2 cut(s) 65, 195
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 3 cut(s) 253, 593, 706
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 5 cut(s) 161, 412, 472, 748, 905
ApaI GGGCCC 1 cut(s) 165
ApeKI GCWGC 4 cut(s) 54, 70, 758, 851
ApoI RAATTY 1 cut(s) 426
Asp700I GAANNNNTTC 2 cut(s) 135, 426
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 4 cut(s) 161, 162, 1000, 1088
AsuHPI GGTGA 3 cut(s) 40, 209, 605
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 2 cut(s) 1000, 1088
BaeGI GKGCMC 1 cut(s) 165
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BalI TGGCCA 2 cut(s) 414, 750
BanII GRGCYC 2 cut(s) 165, 574
BarI GAAGNNNNNNTAC 2 cut(s) 959, 991
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 4 cut(s) 66, 82, 745, 838
BccI CCATC 6 cut(s) 376, 695, 727, 740, 957, 1071
BceAI ACGGC 3 cut(s) 78, 266, 459
BcgI CGANNNNNNTGC 4 cut(s) 482, 516, 830, 864
BciT130I CCWGG 3 cut(s) 697, 812, 909
BciVI GTATCC 1 cut(s) 1148
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 2 cut(s) 948, 1043
BfmI CTRYAG 1 cut(s) 780
BfuI GTATCC 1 cut(s) 1148
BisI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
BlsI GCNGC 6 cut(s) 38, 56, 72, 311, 760, 853
Bme1390I CCNGG 3 cut(s) 697, 812, 909
Bme18I GGWCC 2 cut(s) 1000, 1088
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 4 cut(s) 161, 162, 1000, 1088
BmiI GGNNCC 3 cut(s) 163, 1001, 1089
BmrFI CCNGG 3 cut(s) 697, 812, 909
BmsI GCATC 2 cut(s) 241, 904
Bpu10I CCTNAGC 1 cut(s) 663
BsaJI CCNNGG 3 cut(s) 696, 811, 1028
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 533, 568, 733, 1069
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 823
BseBI CCWGG 3 cut(s) 697, 812, 909
BseDI CCNNGG 3 cut(s) 696, 811, 1028
BseGI GGATG 5 cut(s) 706, 723, 830, 968, 1063
BseLI CCNNNNNNNGG 5 cut(s) 64, 533, 568, 733, 1069
BseMII CTCAG 6 cut(s) 188, 217, 539, 654, 930, 1070
BseNI ACTGG 1 cut(s) 823
BseRI GAGGAG 3 cut(s) 112, 230, 1001
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 4 cut(s) 66, 82, 745, 838
BseYI CCCAGC 2 cut(s) 269, 1150
BsgI GTGCAG 3 cut(s) 89, 1015, 1149
Bsh1236I CGCG 2 cut(s) 41, 901
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 5 cut(s) 163, 414, 474, 750, 907
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 33, 1142
BslFI GGGAC 3 cut(s) 164, 1013, 1101
BslI CCNNNNNNNGG 5 cut(s) 64, 533, 568, 733, 1069
BsmAI GTCTC 1 cut(s) 711
BsmFI GGGAC 3 cut(s) 164, 1013, 1101
BsnI GGCC 5 cut(s) 163, 414, 474, 750, 907
BsoBI CYCGRG 1 cut(s) 504
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 165, 574, 840
Bsp143I GATC 5 cut(s) 9, 199, 258, 598, 711
Bsp19I CCATGG 1 cut(s) 1028
BspACI CCGC 6 cut(s) 36, 41, 65, 310, 901, 1125
BspANI GGCC 5 cut(s) 163, 414, 474, 750, 907
BspCNI CTCAG 6 cut(s) 187, 216, 540, 655, 931, 1069
BspFNI CGCG 2 cut(s) 41, 901
BspHI TCATGA 2 cut(s) 574, 682
BspLI GGNNCC 3 cut(s) 163, 1001, 1089
BspPI GGATC 3 cut(s) 253, 593, 706
BspQI GCTCTTC 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 823
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 696, 811, 1028
BssMI GATC 5 cut(s) 9, 199, 258, 598, 711
BssT1I CCWWGG 1 cut(s) 1028
Bst2UI CCWGG 3 cut(s) 697, 812, 909
Bst4CI ACNGT 2 cut(s) 406, 1040
Bst6I CTCTTC 2 cut(s) 397, 768
BstDEI CTNAG 7 cut(s) 174, 203, 548, 663, 739, 939, 1056
BstDSI CCRYGG 1 cut(s) 1028
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 5 cut(s) 706, 723, 830, 968, 1063
BstFNI CGCG 2 cut(s) 41, 901
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 5 cut(s) 12, 202, 261, 601, 714
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 5 cut(s) 9, 199, 258, 598, 711
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 929
BstNI CCWGG 3 cut(s) 697, 812, 909
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 695, 810, 907
BstSFI CTRYAG 1 cut(s) 780
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 2 cut(s) 41, 901
BstV1I GCAGC 4 cut(s) 66, 82, 745, 838
BstX2I RGATCY 1 cut(s) 598
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 598
BsuI GTATCC 1 cut(s) 1148
BsuRI GGCC 5 cut(s) 163, 414, 474, 750, 907
BtgI CCRYGG 1 cut(s) 1028
BtsCI GGATG 5 cut(s) 706, 723, 830, 968, 1063
BtsI GCAGTG 2 cut(s) 1137, 1158
BtsIMutI CAGTG 2 cut(s) 1137, 1158
CciI TCATGA 2 cut(s) 574, 682
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 4 cut(s) 161, 162, 1000, 1088
CseI GACGC 1 cut(s) 1108
Csp6I GTAC 3 cut(s) 477, 705, 828
CviAII CATG 7 cut(s) 358, 575, 683, 728, 1029, 1116, 1164
CviQI GTAC 3 cut(s) 477, 705, 828
DdeI CTNAG 7 cut(s) 174, 203, 548, 663, 739, 939, 1056
DpnI GATC 5 cut(s) 11, 201, 260, 600, 713
DpnII GATC 5 cut(s) 9, 199, 258, 598, 711
EaeI YGGCCR 3 cut(s) 412, 472, 748
Eam1104I CTCTTC 2 cut(s) 397, 768
EarI CTCTTC 2 cut(s) 397, 768
Eco130I CCWWGG 1 cut(s) 1028
Eco24I GRGCYC 2 cut(s) 165, 574
Eco47I GGWCC 2 cut(s) 1000, 1088
Eco57I CTGAAG 2 cut(s) 73, 749
Eco88I CYCGRG 1 cut(s) 504
Eco91I GGTNACC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 1088
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 3 cut(s) 695, 810, 907
EcoT14I CCWWGG 1 cut(s) 1028
EcoT38I GRGCYC 2 cut(s) 165, 574
ErhI CCWWGG 1 cut(s) 1028
FaeI CATG 7 cut(s) 361, 578, 686, 731, 1032, 1119, 1167
FaqI GGGAC 3 cut(s) 164, 1013, 1101
FatI CATG 7 cut(s) 357, 574, 682, 727, 1028, 1115, 1163
FauI CCCGC 1 cut(s) 34
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
FokI GGATG 5 cut(s) 710, 713, 817, 975, 1050
FriOI GRGCYC 2 cut(s) 165, 574
Fsp4HI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
FspBI CTAG 2 cut(s) 948, 1043
GlaI GCGC 1 cut(s) 40
GluI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
GsaI CCCAGC 2 cut(s) 273, 1154
HaeIII GGCC 5 cut(s) 163, 414, 474, 750, 907
HapII CCGG 2 cut(s) 33, 1142
HgaI GACGC 1 cut(s) 1108
HhaI GCGC 1 cut(s) 41
Hin1II CATG 7 cut(s) 361, 578, 686, 731, 1032, 1119, 1167
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 3 cut(s) 179, 482, 770
HinfI GANTC 5 cut(s) 22, 343, 463, 1052, 1112
HpaII CCGG 2 cut(s) 33, 1142
HphI GGTGA 3 cut(s) 40, 209, 605
Hpy166II GTNNAC 1 cut(s) 1021
Hpy188I TCNGA 7 cut(s) 177, 206, 342, 462, 549, 716, 768
Hpy188III TCNNGA 5 cut(s) 113, 506, 575, 683, 1043
Hpy8I GTNNAC 1 cut(s) 1021
HpyAV CCTTC 3 cut(s) 856, 945, 961
HpyCH4III ACNGT 2 cut(s) 406, 1040
HpyCH4V TGCA 7 cut(s) 70, 299, 375, 401, 996, 1130, 1163
HpyF10VI GCNNNNNNNGC 1 cut(s) 929
HpyF3I CTNAG 7 cut(s) 174, 203, 548, 663, 739, 939, 1056
Hsp92II CATG 7 cut(s) 361, 578, 686, 731, 1032, 1119, 1167
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 5 cut(s) 9, 199, 258, 598, 711
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 1 cut(s) 1065
Lsp1109I GCAGC 4 cut(s) 66, 82, 745, 838
LweI GCATC 2 cut(s) 241, 904
MaeI CTAG 2 cut(s) 948, 1043
MaeIII GTNAC 2 cut(s) 28, 1034
MalI GATC 5 cut(s) 11, 201, 260, 600, 713
MboI GATC 5 cut(s) 9, 199, 258, 598, 711
MboII GAAGA 6 cut(s) 384, 506, 536, 608, 666, 755
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 3 cut(s) 165, 574, 840
MlsI TGGCCA 2 cut(s) 414, 750
MluCI AATT 8 cut(s) 185, 325, 370, 426, 498, 537, 588, 1009
MluNI TGGCCA 2 cut(s) 414, 750
MmeI TCCRAC 2 cut(s) 201, 631
MnlI CCTC 9 cut(s) 76, 133, 208, 433, 500, 543, 897, 979, 1078
Mox20I TGGCCA 2 cut(s) 414, 750
MroXI GAANNNNTTC 2 cut(s) 135, 426
MscI TGGCCA 2 cut(s) 414, 750
MseI TTAA 2 cut(s) 669, 1101
MslI CAYNNNNRTG 4 cut(s) 65, 195, 579, 728
Msp20I TGGCCA 2 cut(s) 414, 750
MspI CCGG 2 cut(s) 33, 1142
MspR9I CCNGG 3 cut(s) 697, 812, 909
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 3 cut(s) 697, 812, 909
MvnI CGCG 2 cut(s) 41, 901
MwoI GCNNNNNNNGC 1 cut(s) 929
NcoI CCATGG 1 cut(s) 1028
NdeI CATATG 1 cut(s) 469
NdeII GATC 5 cut(s) 9, 199, 258, 598, 711
NlaIII CATG 7 cut(s) 361, 578, 686, 731, 1032, 1119, 1167
NlaIV GGNNCC 3 cut(s) 163, 1001, 1089
NmuCI GTSAC 1 cut(s) 28
OliI CACNNNNGTG 2 cut(s) 65, 195
PaeR7I CTCGAG 1 cut(s) 504
PagI TCATGA 2 cut(s) 574, 682
PciSI GCTCTTC 1 cut(s) 768
PdmI GAANNNNTTC 2 cut(s) 135, 426
PfeI GAWTC 5 cut(s) 22, 343, 463, 1052, 1112
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 2 cut(s) 733, 1069
PkrI GCNGC 6 cut(s) 38, 56, 72, 311, 760, 853
Ple19I CGATCG 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 1088
PsiI TTATAA 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 1088
Psp6I CCWGG 3 cut(s) 695, 810, 907
PspEI GGTNACC 1 cut(s) 28
PspFI CCCAGC 2 cut(s) 269, 1150
PspGI CCWGG 3 cut(s) 695, 810, 907
PspN4I GGNNCC 3 cut(s) 163, 1001, 1089
PspOMI GGGCCC 1 cut(s) 161
PspPI GGNCC 4 cut(s) 161, 162, 1000, 1088
PspPPI RGGWCCY 1 cut(s) 1088
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 155
PvuI CGATCG 1 cut(s) 12
RsaI GTAC 3 cut(s) 478, 706, 829
RsaNI GTAC 3 cut(s) 477, 705, 828
RseI CAYNNNNRTG 4 cut(s) 65, 195, 579, 728
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 2 cut(s) 669, 1101
SatI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
Sau3AI GATC 5 cut(s) 9, 199, 258, 598, 711
Sau96I GGNCC 4 cut(s) 161, 162, 1000, 1088
ScrFI CCNGG 3 cut(s) 697, 812, 909
SduI GDGCHC 3 cut(s) 165, 574, 840
SfaNI GCATC 2 cut(s) 241, 904
SfcI CTRYAG 1 cut(s) 780
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 1000, 1088
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 4 cut(s) 65, 195, 579, 728
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 8 cut(s) 185, 325, 370, 426, 498, 537, 588, 1009
SsiI CCGC 6 cut(s) 36, 41, 65, 310, 901, 1125
SspMI CTAG 2 cut(s) 948, 1043
StyD4I CCNGG 3 cut(s) 695, 810, 907
StyI CCWWGG 1 cut(s) 1028
TaaI ACNGT 2 cut(s) 406, 1040
TaqI TCGA 5 cut(s) 8, 12, 492, 505, 840
TasI AATT 8 cut(s) 185, 325, 370, 426, 498, 537, 588, 1009
TauI GCSGC 2 cut(s) 39, 312
TfiI GAWTC 5 cut(s) 22, 343, 463, 1052, 1112
Tru1I TTAA 2 cut(s) 669, 1101
Tru9I TTAA 2 cut(s) 669, 1101
TscAI CASTG 2 cut(s) 1137, 1165
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 4 cut(s) 54, 70, 758, 851
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 4 cut(s) 37, 128, 384, 1104
TspGWI ACGGA 2 cut(s) 823, 993
TspRI CASTG 2 cut(s) 1137, 1165
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 2 cut(s) 733, 1069
VpaK11BI GGWCC 2 cut(s) 1000, 1088
XapI RAATTY 1 cut(s) 426
XbaI TCTAGA 1 cut(s) 1042
XhoI CTCGAG 1 cut(s) 504
XmnI GAANNNNTTC 2 cut(s) 135, 426
XspI CTAG 2 cut(s) 948, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.