Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13330 |
| malus_domestica | MD13G1044000.v1.1 MD16G1044800.v1.1 |
| prunus_persica | Prupe.1G308500_v2.0.a1 |
| pyrus_communis | pycom13g03860 pycom16g03940 |
| rosa_chinensis | RchiOBHm_Chr4g0435501 |
| rosa_laevigata | RLG00000006587 |
| rosa_multiflora | Rmu_co8451555.1_g000001 Rmu_sc0001940.1_g000029 |
| rosa_roxburghii | Rroxscaffold_5G00376730 |
| rosa_rugosa | Rorug04G0285700 |
| rosa_samantha | Rh4AG341400 Rh4BG349600 Rh4CG364300 Rh4DG343900 |
| rosa_wichuraiana | Rw4G029780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 669 |
| AciI | CCGC | 2 cut(s) | 122, 485 |
| AcsI | RAATTY | 1 cut(s) | 553 |
| AcuI | CTGAAG | 1 cut(s) | 255 |
| AfaI | GTAC | 1 cut(s) | 36 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 384 |
| AflII | CTTAAG | 1 cut(s) | 110 |
| AgsI | TTSAA | 5 cut(s) | 275, 287, 473, 599, 650 |
| AjnI | CCWGG | 1 cut(s) | 627 |
| AluBI | AGCT | 4 cut(s) | 29, 86, 283, 589 |
| AluI | AGCT | 4 cut(s) | 29, 86, 283, 589 |
| Alw26I | GTCTC | 1 cut(s) | 522 |
| Ama87I | CYCGRG | 1 cut(s) | 669 |
| AoxI | GGCC | 2 cut(s) | 449, 665 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 1 cut(s) | 553 |
| AseI | ATTAAT | 1 cut(s) | 495 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 282 |
| AspLEI | GCGC | 1 cut(s) | 507 |
| AsuHPI | GGTGA | 1 cut(s) | 457 |
| AvaI | CYCGRG | 1 cut(s) | 669 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 18, 50 |
| BbsI | GAAGAC | 3 cut(s) | 122, 264, 462 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BciT130I | CCWGG | 1 cut(s) | 629 |
| BciVI | GTATCC | 1 cut(s) | 532 |
| BcoDI | GTCTC | 1 cut(s) | 522 |
| BfaI | CTAG | 2 cut(s) | 204, 353 |
| BfrI | CTTAAG | 1 cut(s) | 110 |
| BfuI | GTATCC | 1 cut(s) | 532 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 1 cut(s) | 629 |
| BmeT110I | CYCGRG | 1 cut(s) | 669 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 629 |
| BmsI | GCATC | 3 cut(s) | 79, 142, 364 |
| BpiI | GAAGAC | 3 cut(s) | 122, 264, 462 |
| BsaAI | YACGTR | 1 cut(s) | 428 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 384 |
| Bse1I | ACTGG | 2 cut(s) | 214, 420 |
| Bse3DI | GCAATG | 1 cut(s) | 198 |
| BseBI | CCWGG | 1 cut(s) | 629 |
| BseGI | GGATG | 1 cut(s) | 525 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BseMI | GCAATG | 1 cut(s) | 198 |
| BseNI | ACTGG | 2 cut(s) | 214, 420 |
| BseRI | GAGGAG | 1 cut(s) | 599 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| BshFI | GGCC | 2 cut(s) | 451, 667 |
| BsiHKCI | CYCGRG | 1 cut(s) | 669 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BsmAI | GTCTC | 1 cut(s) | 522 |
| BsnI | GGCC | 2 cut(s) | 451, 667 |
| BsoBI | CYCGRG | 1 cut(s) | 669 |
| BspACI | CCGC | 2 cut(s) | 122, 485 |
| BspANI | GGCC | 2 cut(s) | 451, 667 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspTI | CTTAAG | 1 cut(s) | 110 |
| BsrDI | GCAATG | 1 cut(s) | 198 |
| BsrI | ACTGG | 2 cut(s) | 214, 420 |
| Bst2UI | CCWGG | 1 cut(s) | 629 |
| Bst4CI | ACNGT | 2 cut(s) | 544, 678 |
| Bst6I | CTCTTC | 2 cut(s) | 351, 402 |
| BstAFI | CTTAAG | 1 cut(s) | 110 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 89 |
| BstBAI | YACGTR | 1 cut(s) | 428 |
| BstC8I | GCNNGC | 1 cut(s) | 509 |
| BstDEI | CTNAG | 2 cut(s) | 383, 620 |
| BstF5I | GGATG | 1 cut(s) | 525 |
| BstHHI | GCGC | 1 cut(s) | 507 |
| BstMAI | GTCTC | 1 cut(s) | 522 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BstNI | CCWGG | 1 cut(s) | 629 |
| BstSCI | CCNGG | 1 cut(s) | 627 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BstV2I | GAAGAC | 3 cut(s) | 122, 264, 462 |
| BsuI | GTATCC | 1 cut(s) | 532 |
| BsuRI | GGCC | 2 cut(s) | 451, 667 |
| BtsCI | GGATG | 1 cut(s) | 525 |
| BtsIMutI | CAGTG | 2 cut(s) | 313, 506 |
| Cac8I | GCNNGC | 1 cut(s) | 509 |
| CfoI | GCGC | 1 cut(s) | 507 |
| Csp6I | GTAC | 1 cut(s) | 35 |
| CviAII | CATG | 1 cut(s) | 653 |
| CviJI | RGCY | 8 cut(s) | 5, 29, 86, 283, 451, 467, 589, 667 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 29, 86, 283, 451, 467, 589, 667 |
| CviQI | GTAC | 1 cut(s) | 35 |
| DdeI | CTNAG | 2 cut(s) | 383, 620 |
| DraI | TTTAAA | 1 cut(s) | 172 |
| Eam1104I | CTCTTC | 2 cut(s) | 351, 402 |
| EarI | CTCTTC | 2 cut(s) | 351, 402 |
| Eco147I | AGGCCT | 1 cut(s) | 667 |
| Eco57I | CTGAAG | 1 cut(s) | 255 |
| Eco88I | CYCGRG | 1 cut(s) | 669 |
| EcoRI | GAATTC | 1 cut(s) | 553 |
| EcoRII | CCWGG | 1 cut(s) | 627 |
| FaeI | CATG | 1 cut(s) | 656 |
| FaiI | YATR | 7 cut(s) | 180, 196, 479, 483, 634, 636, 654 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 267, 299 |
| FatI | CATG | 1 cut(s) | 652 |
| FauNDI | CATATG | 1 cut(s) | 634 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 1 cut(s) | 532 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 2 cut(s) | 204, 353 |
| GlaI | GCGC | 1 cut(s) | 506 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HaeIII | GGCC | 2 cut(s) | 451, 667 |
| HhaI | GCGC | 1 cut(s) | 507 |
| Hin1II | CATG | 1 cut(s) | 656 |
| Hin6I | GCGC | 1 cut(s) | 505 |
| HinP1I | GCGC | 1 cut(s) | 505 |
| HinfI | GANTC | 2 cut(s) | 223, 317 |
| HphI | GGTGA | 1 cut(s) | 457 |
| Hpy188I | TCNGA | 4 cut(s) | 16, 235, 322, 527 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 287, 328 |
| HpyAV | CCTTC | 2 cut(s) | 425, 565 |
| HpyCH4III | ACNGT | 2 cut(s) | 544, 678 |
| HpyCH4IV | ACGT | 2 cut(s) | 167, 427 |
| HpyCH4V | TGCA | 3 cut(s) | 83, 127, 337 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 2 cut(s) | 383, 620 |
| HpySE526I | ACGT | 2 cut(s) | 167, 427 |
| Hsp92II | CATG | 1 cut(s) | 656 |
| HspAI | GCGC | 1 cut(s) | 505 |
| LmnI | GCTCC | 2 cut(s) | 10, 586 |
| LpnPI | CCDG | 6 cut(s) | 141, 227, 401, 465, 614, 641 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| LweI | GCATC | 3 cut(s) | 79, 142, 364 |
| MaeI | CTAG | 2 cut(s) | 204, 353 |
| MaeII | ACGT | 2 cut(s) | 167, 427 |
| MaeIII | GTNAC | 1 cut(s) | 544 |
| MluCI | AATT | 3 cut(s) | 553, 594, 645 |
| MnlI | CCTC | 8 cut(s) | 75, 385, 441, 510, 577, 657, 665, 678 |
| MroXI | GAANNNNTTC | 1 cut(s) | 282 |
| MseI | TTAA | 5 cut(s) | 105, 111, 171, 396, 495 |
| MspA1I | CMGCKG | 1 cut(s) | 86 |
| MspCI | CTTAAG | 1 cut(s) | 110 |
| MspR9I | CCNGG | 1 cut(s) | 629 |
| MvaI | CCWGG | 1 cut(s) | 629 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NdeI | CATATG | 1 cut(s) | 634 |
| NlaIII | CATG | 1 cut(s) | 656 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PaeR7I | CTCGAG | 1 cut(s) | 669 |
| PceI | AGGCCT | 1 cut(s) | 667 |
| PdmI | GAANNNNTTC | 1 cut(s) | 282 |
| PfeI | GAWTC | 2 cut(s) | 223, 317 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| Ppu21I | YACGTR | 1 cut(s) | 428 |
| PshBI | ATTAAT | 1 cut(s) | 495 |
| Psp6I | CCWGG | 1 cut(s) | 627 |
| PspGI | CCWGG | 1 cut(s) | 627 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspXI | VCTCGAGB | 1 cut(s) | 669 |
| PvuII | CAGCTG | 1 cut(s) | 86 |
| RsaI | GTAC | 1 cut(s) | 36 |
| RsaNI | GTAC | 1 cut(s) | 35 |
| SaqAI | TTAA | 5 cut(s) | 105, 111, 171, 396, 495 |
| SatI | GCNGC | 1 cut(s) | 84 |
| ScrFI | CCNGG | 1 cut(s) | 629 |
| SfaNI | GCATC | 3 cut(s) | 79, 142, 364 |
| Sfr274I | CTCGAG | 1 cut(s) | 669 |
| SlaI | CTCGAG | 1 cut(s) | 669 |
| SmlI | CTYRAG | 2 cut(s) | 110, 669 |
| SmoI | CTYRAG | 2 cut(s) | 110, 669 |
| Sse9I | AATT | 3 cut(s) | 553, 594, 645 |
| SseBI | AGGCCT | 1 cut(s) | 667 |
| SsiI | CCGC | 2 cut(s) | 122, 485 |
| SspMI | CTAG | 2 cut(s) | 204, 353 |
| StuI | AGGCCT | 1 cut(s) | 667 |
| StyD4I | CCNGG | 1 cut(s) | 627 |
| TaaI | ACNGT | 2 cut(s) | 544, 678 |
| TaiI | ACGT | 2 cut(s) | 170, 430 |
| TaqI | TCGA | 1 cut(s) | 670 |
| TaqII | GACCGA | 1 cut(s) | 605 |
| TasI | AATT | 3 cut(s) | 553, 594, 645 |
| TfiI | GAWTC | 2 cut(s) | 223, 317 |
| Tru1I | TTAA | 5 cut(s) | 105, 111, 171, 396, 495 |
| Tru9I | TTAA | 5 cut(s) | 105, 111, 171, 396, 495 |
| TscAI | CASTG | 2 cut(s) | 313, 506 |
| TseI | GCWGC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 2 cut(s) | 266, 621 |
| TspRI | CASTG | 2 cut(s) | 313, 506 |
| Vha464I | CTTAAG | 1 cut(s) | 110 |
| VspI | ATTAAT | 1 cut(s) | 495 |
| XapI | RAATTY | 1 cut(s) | 553 |
| XhoI | CTCGAG | 1 cut(s) | 669 |
| XmnI | GAANNNNTTC | 1 cut(s) | 282 |
| XspI | CTAG | 2 cut(s) | 204, 353 |