Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014541

Physical Location & Seq

Genomic Coordinates Reverse (-)

3162114 .. 3163731

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1044800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTCCCAAATTCGAAAACCCAGAAGCAATCGTCCTCAACTACCTGAACGAGCAAAATAGGCCGCTGAATTCTCAAAATGTGGCAGATGCGTTGCAGAAGTTCAACCTCAAGAAGGCGGCCATACAGAAGGCGCTGGACACTCTTGCGGATAATGGCAAGATTTCGTTCAAGGAGTATGGCAAGCAGAAGATCTACCTGGCTCGGCAGGACCAGTTCGACATTCCTAACAGCGAGGAGCTTACCCGAATGAAGCAAGAGAATGAGAAACTGCAGGAACAGCTGGGTGAACAAAAGAGAGCAATTAGCGAGGTTGAGGGAGAAATAAAAACATTGCAGTCACATTTGACTCTGGAGCAAATAAGGGACAAAGAAGCGAAACTGAGAAAGGAGGTCAATGAAATGGAGGACAGGTTGGAAAAATTGCGCGGAGGAGTTACGTTGGTCAAGCCAGAAGACCGCAAGGCGGTTGAGCAAATGGTCTCCGAGAAAGTCAGCCAGTGGAGAAAGCGTCGAAGGATGTTCAAAGATCTGTGGGATGCTATTACTGAGAACTCACCGAAAGATGTCAAGGAATTTAAGGAGGAGCTCGGGATCGACTATGATGAAGATGTTGGTGTGAGCTTGCAGTCATTTAGGGATCTGTGCAGTAACAAGAGGCCTAGACTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBPIP

Protein Analysis

225

Amino Acids

26.25

Weight (kDa)

7.71

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_TBPIP	PF07106	9 - 68	1e-25	TBPIP/Hop2 winged helix domain
LZ3wCH	PF18517	149 - 206	3.9e-18	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13330
malus_domestica	MD13G1044000.v1.1 MD16G1044800.v1.1
prunus_persica	Prupe.1G308500_v2.0.a1
pyrus_communis	pycom13g03860 pycom16g03940
rosa_chinensis	RchiOBHm_Chr4g0435501
rosa_laevigata	RLG00000006587
rosa_multiflora	Rmu_co8451555.1_g000001 Rmu_sc0001940.1_g000029
rosa_roxburghii	Rroxscaffold_5G00376730
rosa_rugosa	Rorug04G0285700
rosa_samantha	Rh4AG341400 Rh4BG349600 Rh4CG364300 Rh4DG343900
rosa_wichuraiana	Rw4G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	429
AciI	CCGC	6 cut(s)	65, 119, 149, 429, 460, 467
AclWI	GGATC	2 cut(s)	602, 648
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	3 cut(s)	11, 70, 575
AfiI	CCNNNNNNNGG	2 cut(s)	115, 466
AgsI	TTSAA	3 cut(s)	106, 172, 526
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	241, 283, 589, 624
AluI	AGCT	4 cut(s)	241, 283, 589, 624
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	602, 648
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	3 cut(s)	62, 120, 659
ApoI	RAATTY	3 cut(s)	11, 70, 575
AspLEI	GCGC	2 cut(s)	136, 429
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	299, 549
AsuII	TTCGAA	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	591
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	137
BglII	AGATCT	2 cut(s)	192, 529
BisI	GCNGC	2 cut(s)	65, 120
BlsI	GCNGC	2 cut(s)	66, 121
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	79, 529
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	487
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 466
Bse1I	ACTGG	2 cut(s)	214, 499
Bse3DI	GCAATG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	525, 544
BseLI	CCNNNNNNNGG	2 cut(s)	115, 466
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	374, 540
BseNI	ACTGG	2 cut(s)	214, 499
BseRI	GAGGAG	3 cut(s)	251, 447, 599
BseYI	CCCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	64, 122, 661
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	115, 466
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	64, 122, 661
Bso31I	GGTCTC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	590
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	192, 529, 594, 640
BspACI	CCGC	6 cut(s)	65, 119, 149, 429, 460, 467
BspANI	GGCC	3 cut(s)	64, 122, 661
BspCNI	CTCAG	2 cut(s)	375, 541
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	2 cut(s)	602, 648
BspT104I	TTCGAA	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	214, 499
BssMI	GATC	4 cut(s)	192, 529, 594, 640
Bst2UI	CCWGG	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	185, 626
BstDEI	CTNAG	2 cut(s)	383, 549
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	525, 544
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	136, 429
BstKTI	GATC	4 cut(s)	195, 532, 597, 643
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	4 cut(s)	192, 529, 594, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 280
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	3 cut(s)	192, 529, 640
BstYI	RGATCY	3 cut(s)	192, 529, 640
BsuRI	GGCC	3 cut(s)	64, 122, 661
BtsCI	GGATG	2 cut(s)	525, 544
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	2 cut(s)	185, 626
CfoI	GCGC	2 cut(s)	136, 429
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	500
DdeI	CTNAG	2 cut(s)	383, 549
DpnI	GATC	4 cut(s)	194, 531, 596, 642
DpnII	GATC	4 cut(s)	192, 529, 594, 640
EaeI	YGGCCR	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	589
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	591
FaiI	YATR	3 cut(s)	125, 180, 603
FaqI	GGGAC	1 cut(s)	380
Fnu4HI	GCNGC	2 cut(s)	65, 120
FokI	GGATG	2 cut(s)	532, 551
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	65, 120
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	2 cut(s)	135, 428
GluI	GCNGC	2 cut(s)	65, 120
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	64, 122, 661
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	2 cut(s)	136, 429
Hin6I	GCGC	2 cut(s)	134, 427
HinP1I	GCGC	2 cut(s)	134, 427
HinfI	GANTC	2 cut(s)	349, 666
HphI	GGTGA	2 cut(s)	299, 549
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	3 cut(s)	112, 353, 592
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	516
HpyAV	CCTTC	3 cut(s)	109, 124, 510
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	97, 274, 337, 628, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 280
HpyF3I	CTNAG	2 cut(s)	383, 549
HpySE526I	ACGT	1 cut(s)	440
HspAI	GCGC	2 cut(s)	134, 427
Kzo9I	GATC	4 cut(s)	192, 529, 594, 640
LmnI	GCTCC	4 cut(s)	10, 238, 355, 586
LweI	GCATC	2 cut(s)	79, 529
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	3 cut(s)	339, 436, 650
MalI	GATC	4 cut(s)	194, 531, 596, 642
MboI	GATC	4 cut(s)	192, 529, 594, 640
MboII	GAAGA	3 cut(s)	202, 467, 620
MflI	RGATCY	3 cut(s)	192, 529, 640
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	5 cut(s)	11, 70, 303, 422, 575
MlyI	GAGTC	2 cut(s)	343, 660
MmeI	TCCRAC	1 cut(s)	396
MseI	TTAA	1 cut(s)	579
MspA1I	CMGCKG	2 cut(s)	67, 283
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	61, 280
NdeII	GATC	4 cut(s)	192, 529, 594, 640
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	339
NspV	TTCGAA	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	661
PkrI	GCNGC	2 cut(s)	66, 121
PleI	GAGTC	2 cut(s)	343, 660
PpsI	GAGTC	2 cut(s)	343, 660
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	3 cut(s)	192, 529, 640
PvuII	CAGCTG	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	65, 120
Sau3AI	GATC	4 cut(s)	192, 529, 594, 640
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	343, 660
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	2 cut(s)	79, 529
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	5 cut(s)	11, 70, 303, 422, 575
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	6 cut(s)	65, 119, 149, 429, 460, 467
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	4 cut(s)	15, 219, 514, 597
TasI	AATT	5 cut(s)	11, 70, 303, 422, 575
TauI	GCSGC	2 cut(s)	67, 122
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	506
TseFI	GTSAC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	3 cut(s)	266, 414, 621
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	3 cut(s)	11, 70, 575
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.