Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014541

Physical Location & Seq

Genomic Coordinates Reverse (-)

2572035 .. 2573460

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTCCGAAATCCGAAAACCCCGAAGCAATCGTCCTCAACTACATGAACGAGCAAAATAGGCCGCTGAATTCTCAAAATGTGGCGGATTCGTTGCAAAAGTTTAACCTCAAGAAGGCGGCCATACAAAAGGCGCTGGATGCGCTTGCGGATAATGGGAAGATTTCGTTCAAGGAGTACGGTAAGCAGAAGGTCTACCTGGCTCGGCAGGACCAGTTCGATATTCCAAACAGCGAGGAGCTTACCCGGATGAAGCAAGAAAATGAGAAACTGCAGGCACAGCTGGGTGAACAAAAGAGAGCGATTAGCGAGGTTGAGGGAGAAATTAAAACTTTGCAGGCAAATTTGACTCTAGAGCAAATACGGGACAAAGAAGCGAAACTGAGAAGGGAGGTCGCTGAAATGGAGGATAGAGTGGAACAATTGCGCGGAGGAGTTACGTTGGTCAAGCCAGAAGACCGCAAGGCGGTTGAGCAAATGGTCTCTGAGAAAATAAGTCAGTGGAGAAAGCGTCGAAGGATGTTCAAAGATCTGTGGGATGCTATTACTGAGAACTCACCAAAAGATGTTAAGGAATTTAAGGAGGAACTCGGGATCGAATATGATGAAGACGTTGGTGTGAGTTTGCAGTCATTTAGTGACCTGCGCAGTAACAAGCGGTCTAGACTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBPIP

Protein Analysis

225

Amino Acids

26.05

Weight (kDa)

6.54

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_TBPIP	PF07106	9 - 68	6e-25	TBPIP/Hop2 winged helix domain
LZ3wCH	PF18517	149 - 206	3.8e-18	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13330
malus_domestica	MD13G1044000.v1.1 MD16G1044800.v1.1
prunus_persica	Prupe.1G308500_v2.0.a1
pyrus_communis	pycom13g03860 pycom16g03940
rosa_chinensis	RchiOBHm_Chr4g0435501
rosa_laevigata	RLG00000006587
rosa_multiflora	Rmu_co8451555.1_g000001 Rmu_sc0001940.1_g000029
rosa_roxburghii	Rroxscaffold_5G00376730
rosa_rugosa	Rorug04G0285700
rosa_samantha	Rh4AG341400 Rh4BG349600 Rh4CG364300 Rh4DG343900
rosa_wichuraiana	Rw4G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	429
AciI	CCGC	8 cut(s)	65, 86, 119, 149, 429, 460, 467, 658
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	3 cut(s)	70, 343, 575
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	115, 466
AgsI	TTSAA	2 cut(s)	172, 526
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	241, 283
AluI	AGCT	2 cut(s)	241, 283
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	62, 120
ApoI	RAATTY	3 cut(s)	70, 343, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AspLEI	GCGC	4 cut(s)	136, 145, 429, 648
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	299, 549
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	211
BbsI	GAAGAC	2 cut(s)	462, 615
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	353, 663
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	651
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	2 cut(s)	65, 120
BlsI	GCNGC	2 cut(s)	66, 121
Bme1390I	CCNGG	2 cut(s)	200, 247
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	200, 247
BmsI	GCATC	2 cut(s)	130, 529
BpiI	GAAGAC	2 cut(s)	462, 615
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 466
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	200
BseGI	GGATG	4 cut(s)	145, 255, 525, 544
BseLI	CCNNNNNNNGG	2 cut(s)	115, 466
BseMII	CTCAG	3 cut(s)	374, 477, 540
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	251, 447
BseYI	CCCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	64, 122
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	115, 466
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	64, 122
Bso31I	GGTCTC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	590
Bsp143I	GATC	2 cut(s)	529, 594
BspACI	CCGC	8 cut(s)	65, 86, 119, 149, 429, 460, 467, 658
BspANI	GGCC	2 cut(s)	64, 122
BspCNI	CTCAG	3 cut(s)	375, 478, 541
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	651
BspPI	GGATC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	529, 594
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	147, 276, 339
BstDEI	CTNAG	3 cut(s)	383, 486, 549
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	4 cut(s)	145, 255, 525, 544
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	4 cut(s)	136, 145, 429, 648
BstKTI	GATC	2 cut(s)	532, 597
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	2 cut(s)	529, 594
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 140, 142, 280
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	198, 245
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	429
BstV2I	GAAGAC	2 cut(s)	462, 615
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	64, 122
BtsCI	GGATG	4 cut(s)	145, 255, 525, 544
BtsIMutI	CAGTG	1 cut(s)	506
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	3 cut(s)	147, 276, 339
CfoI	GCGC	4 cut(s)	136, 145, 429, 648
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	5, 64, 122, 203, 241, 283, 451
CviKI_1	RGCY	7 cut(s)	5, 64, 122, 203, 241, 283, 451
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	383, 486, 549
DpnI	GATC	2 cut(s)	531, 596
DpnII	GATC	2 cut(s)	529, 594
EaeI	YGGCCR	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	49
FaiI	YATR	3 cut(s)	47, 125, 603
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	65, 120
FokI	GGATG	4 cut(s)	152, 262, 532, 551
Fsp4HI	GCNGC	2 cut(s)	65, 120
FspBI	CTAG	2 cut(s)	353, 663
FspI	TGCGCA	1 cut(s)	647
GlaI	GCGC	4 cut(s)	135, 144, 428, 647
GluI	GCNGC	2 cut(s)	65, 120
GsaI	CCCAGC	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	64, 122
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	4 cut(s)	136, 145, 429, 648
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	4 cut(s)	134, 143, 427, 646
HinP1I	GCGC	4 cut(s)	134, 143, 427, 646
HinfI	GANTC	3 cut(s)	89, 349, 666
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	299, 549
Hpy166II	GTNNAC	2 cut(s)	196, 290
Hpy188I	TCNGA	3 cut(s)	9, 16, 487
Hpy188III	TCNNGA	4 cut(s)	112, 353, 592, 663
Hpy8I	GTNNAC	2 cut(s)	196, 290
Hpy99I	CGWCG	1 cut(s)	516
HpyAV	CCTTC	4 cut(s)	109, 184, 381, 510
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	440, 612
HpyCH4V	TGCA	4 cut(s)	97, 274, 337, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 140, 142, 280
HpyF3I	CTNAG	3 cut(s)	383, 486, 549
HpySE526I	ACGT	2 cut(s)	440, 612
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	4 cut(s)	134, 143, 427, 646
Kzo9I	GATC	2 cut(s)	529, 594
LmnI	GCTCC	2 cut(s)	10, 238
LweI	GCATC	2 cut(s)	130, 529
MaeI	CTAG	2 cut(s)	353, 663
MaeII	ACGT	2 cut(s)	440, 612
MaeIII	GTNAC	3 cut(s)	436, 638, 650
MalI	GATC	2 cut(s)	531, 596
MboI	GATC	2 cut(s)	529, 594
MboII	GAAGA	3 cut(s)	172, 467, 620
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	5 cut(s)	70, 324, 343, 422, 575
MlyI	GAGTC	2 cut(s)	343, 660
MnlI	CCTC	9 cut(s)	47, 119, 229, 304, 310, 385, 400, 425, 577
MseI	TTAA	4 cut(s)	105, 327, 570, 579
MspA1I	CMGCKG	2 cut(s)	67, 283
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	200, 247
MunI	CAATTG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	61, 140, 142, 280
NciI	CCSGG	1 cut(s)	247
NdeII	GATC	2 cut(s)	529, 594
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	638
NsbI	TGCGCA	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	66, 121
PleI	GAGTC	2 cut(s)	343, 660
PpsI	GAGTC	2 cut(s)	343, 660
Psp6I	CCWGG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	105, 327, 570, 579
SatI	GCNGC	2 cut(s)	65, 120
Sau3AI	GATC	2 cut(s)	529, 594
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	343, 660
ScrFI	CCNGG	2 cut(s)	200, 247
SfaNI	GCATC	2 cut(s)	130, 529
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	5 cut(s)	70, 324, 343, 422, 575
SsiI	CCGC	8 cut(s)	65, 86, 119, 149, 429, 460, 467, 658
SspMI	CTAG	2 cut(s)	353, 663
StyD4I	CCNGG	2 cut(s)	198, 245
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	443, 615
TaqI	TCGA	3 cut(s)	219, 514, 597
TasI	AATT	5 cut(s)	70, 324, 343, 422, 575
TauI	GCSGC	2 cut(s)	67, 122
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	105, 327, 570, 579
Tru9I	TTAA	4 cut(s)	105, 327, 570, 579
TscAI	CASTG	1 cut(s)	506
TseFI	GTSAC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	3 cut(s)	62, 266, 621
TspRI	CASTG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	3 cut(s)	70, 343, 575
XbaI	TCTAGA	2 cut(s)	352, 662
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	353, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.