Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014541

Physical Location & Seq

Genomic Coordinates Reverse (-)

65025042 .. 65026434

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG341400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGCCCAAATCCGATAACACAGAAGCAATCGTTCTCAGATTCGTGAATGAGCAAAATAAACCACTGAATTCTCAAAATGTGGCTGATGCGTTGCAAAAGTTCAACCTTAAGAAGACGGCAATACAGAAATCGCTGGATACTCTTGCTGATGGTGGAAAGATTTCGTTCAAGGAGTATGGTAAGCAGAAGATATACCTGGCTCGGCAAGACCAGTTTGATATTCCAAACAGTGAGGAGCTTAACCAGATGAAGGATGCAAATGCGAAGCTGCAAGAACAGTTGGCTGAGCAAAAGAGGGCAATCAGCGAGGTCGAGGGAGAGATTAAAGCTTTGCAGTCAAATTTGACCCTGGAACAAATAAAGGAGAAAGACACCAAACTGAGAAAGGAGGTTAAGGAACTGGAAGACAAGTTGGAGAAATTGCGAGGAGGAGTTACCTTGGTCAAACCTGAAGACCGCAAGATTATTGAGCAAATGTACTCGGAGAAGATAAGTCAGTGGAGAAAGCGTAAGAGGATCTTCAAAGATCTCTGGGACACTATAACTGAAAATTCACCTAAAGATATCAAGGAGTTCAAGGAAGAGCTTGGGCTTGAATATGATGAAGATGTTGGTGTGAATCTTCAGTCATTCAGTGACCTGCTGCCAAAGAGTAAGAAGCGGCCTACAGGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBPIP

Protein Analysis

226

Amino Acids

26.21

Weight (kDa)

8.46

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_TBPIP	PF07106	7 - 68	5.4e-24	TBPIP/Hop2 winged helix domain
LZ3wCH	PF18517	149 - 206	6.2e-16	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13330
malus_domestica	MD13G1044000.v1.1 MD16G1044800.v1.1
prunus_persica	Prupe.1G308500_v2.0.a1
pyrus_communis	pycom13g03860 pycom16g03940
rosa_chinensis	RchiOBHm_Chr4g0435501
rosa_laevigata	RLG00000006587
rosa_multiflora	Rmu_co8451555.1_g000001 Rmu_sc0001940.1_g000029
rosa_roxburghii	Rroxscaffold_5G00376730
rosa_rugosa	Rorug04G0285700
rosa_samantha	Rh4AG341400 Rh4BG349600 Rh4CG364300 Rh4DG343900
rosa_wichuraiana	Rw4G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	460, 664
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	3 cut(s)	70, 343, 553
AcuI	CTGAAG	2 cut(s)	474, 611
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	5 cut(s)	106, 172, 526, 580, 599
AjnI	CCWGG	2 cut(s)	198, 351
AluBI	AGCT	4 cut(s)	241, 271, 332, 589
AluI	AGCT	4 cut(s)	241, 271, 332, 589
AlwI	GGATC	1 cut(s)	527
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	271, 646
ApoI	RAATTY	3 cut(s)	70, 343, 553
Asp700I	GAANNNNTTC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	3 cut(s)	122, 414, 462
BbvI	GCAGC	2 cut(s)	258, 633
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	200, 353
BciVI	GTATCC	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	3 cut(s)	272, 647, 665
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	3 cut(s)	273, 648, 666
Bme1390I	CCNGG	2 cut(s)	200, 353
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	200, 353
BmsI	GCATC	2 cut(s)	79, 247
BpiI	GAAGAC	3 cut(s)	122, 414, 462
Bpu1102I	GCTNAGC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	351, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	214, 408
BseBI	CCWGG	2 cut(s)	200, 353
BseDI	CCNNGG	2 cut(s)	351, 441
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	52, 279, 374
BseNI	ACTGG	2 cut(s)	214, 408
BseRI	GAGGAG	3 cut(s)	251, 444, 447
BseXI	GCAGC	2 cut(s)	258, 633
BshFI	GGCC	1 cut(s)	667
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	667
Bsp143I	GATC	2 cut(s)	519, 529
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	460, 664
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	3 cut(s)	51, 280, 375
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	651
BspPI	GGATC	1 cut(s)	527
BspQI	GCTCTTC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	214, 408
BssECI	CCNNGG	2 cut(s)	351, 441
BssMI	GATC	2 cut(s)	519, 529
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	200, 353
Bst4CI	ACNGT	2 cut(s)	233, 282
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	38, 288, 383
BstF5I	GGATG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	522, 532
BstMBI	GATC	2 cut(s)	519, 529
BstNI	CCWGG	2 cut(s)	200, 353
BstSCI	CCNGG	2 cut(s)	198, 351
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	258, 633
BstV2I	GAAGAC	3 cut(s)	122, 414, 462
BstX2I	RGATCY	2 cut(s)	519, 529
BstYI	RGATCY	2 cut(s)	519, 529
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	4 cut(s)	65, 238, 506, 643
BveI	ACCTGC	1 cut(s)	651
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	481
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	3 cut(s)	38, 288, 383
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	521, 531
DpnII	GATC	2 cut(s)	519, 529
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	441
Eco32I	GATATC	1 cut(s)	568
Eco57I	CTGAAG	2 cut(s)	474, 611
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	198, 351
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	441
FaiI	YATR	4 cut(s)	180, 196, 545, 603
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	551
Fnu4HI	GCNGC	3 cut(s)	272, 647, 665
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	272, 647, 665
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	272, 647, 665
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	667
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	42, 622
HphI	GGTGA	1 cut(s)	549
Hpy188I	TCNGA	3 cut(s)	16, 41, 487
Hpy188III	TCNNGA	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	233, 282
HpyCH4V	TGCA	4 cut(s)	97, 260, 274, 337
HpyF3I	CTNAG	3 cut(s)	38, 288, 383
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	519, 529
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	2 cut(s)	258, 633
LweI	GCATC	2 cut(s)	79, 247
MaeIII	GTNAC	2 cut(s)	436, 638
MalI	GATC	2 cut(s)	521, 531
MboI	GATC	2 cut(s)	519, 529
MboII	GAAGA	9 cut(s)	127, 202, 419, 467, 502, 514, 596, 617, 620
MflI	RGATCY	2 cut(s)	519, 529
MluCI	AATT	4 cut(s)	70, 343, 422, 553
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	8 cut(s)	229, 291, 304, 310, 385, 422, 425, 510
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	4 cut(s)	111, 243, 327, 396
MspCI	CTTAAG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	200, 353
MvaI	CCWGG	2 cut(s)	200, 353
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	519, 529
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	638
PciSI	GCTCTTC	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	42, 622
PkrI	GCNGC	3 cut(s)	273, 648, 666
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	198, 351
PspGI	CCWGG	2 cut(s)	198, 351
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	519, 529
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	111, 243, 327, 396
SatI	GCNGC	3 cut(s)	272, 647, 665
Sau3AI	GATC	2 cut(s)	519, 529
ScrFI	CCNGG	2 cut(s)	200, 353
SfaNI	GCATC	2 cut(s)	79, 247
SfcI	CTRYAG	1 cut(s)	669
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	70, 343, 422, 553
SsiI	CCGC	2 cut(s)	460, 664
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	2 cut(s)	198, 351
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	233, 282
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	70, 343, 422, 553
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	667
TfiI	GAWTC	2 cut(s)	42, 622
Tru1I	TTAA	4 cut(s)	111, 243, 327, 396
Tru9I	TTAA	4 cut(s)	111, 243, 327, 396
TscAI	CASTG	4 cut(s)	72, 238, 506, 643
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	2 cut(s)	271, 646
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	2 cut(s)	266, 621
TspRI	CASTG	4 cut(s)	72, 238, 506, 643
Vha464I	CTTAAG	1 cut(s)	110
XapI	RAATTY	3 cut(s)	70, 343, 553
XmnI	GAANNNNTTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.