Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014541

Physical Location & Seq

Genomic Coordinates Forward (+)

45924293 .. 45926127

Gene Structure 1835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0285700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGTACCCGTTTTCAGAAGGAAAATTCGTTCTTGGCATTATTTTTGCACTGTGGAGAATGTGTTCAGCAAAAGAAATTTCTACTAATTTTGTGTTTGGCGATTCTCTAGTTGAAGTGGGGAACAACAACTATATTGTGACTCTCTCCAAGGCTGATCATCCTCCCTATGGAATTGATTTCGGAAAGCCTACCGGGAGATTCACAAATGGAAGAACCATCATTGATATTGCAGGTCAGACTCTGGGTTTAAAGGAGTTCACTCCTCCTTACTTGGCTCCCACAACAGCTGGACCAGTAATTCTGAGGGGTGTCAACTATGCTTCAGGTGGAGGTGGAATTCTTAACGAAACAGGAAAATTATTTATTGGTAGAATAAACTTGGATGCACAGATAGATAACTTTGCAAATACCAGAGAAGACATTATCTCAAGCATTGGTCGTCCTGCAGCAGTAGAGCTACTTAGAAGAGCTCTCTTCTCGGTAACAATCGGGTCAAACGATTTCCTCAATAACTACTTGTTGCCAGTTATAACCGAGTTTAAGAGGAAGTTGATACCTCCGGAAACCTTTGTTGGCATTTTGATTGCAAGATTCAGACTACAACTCACAAGACTGTACAATTTGGGTGCAAGGAAGATGGTTGTAGTAGGTGTAGGACCTCTTGGGTGTATACCCTATCAAAGGGATATAAATATTGTTGCTAATCCAGATAGCTGTGTTCAACTTACAAATCAACTAGCGCGGTCATTCAACAGCAAGCTACAGACCCTCGTCACCGAACTAAACACTAATCTAACAGGGGCGAAATTTGTTTATGCGAATGTTTATGGTATCTTCCACGACATCATTGAGAACTACAAATCATATGGTTTTGAGAATGCAAACTCCGCGTGCTGCGGATTTGGTGGGCGCTATGGGGGTCTAGGCTCATGCGGTTCCCAGCCATTAGAAGTTTGTGAGGACCGGTCTAAGTATGTGTTTTGGGACGCTTACCATCCTTCTGAGGCTTGTAATATGATCATAGCAAGGCGTCTCTTGTATGGGAACTCCAGCGATATTTCACCCATGAATATTGTGCAACTCCTCCAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBPIP

Protein Analysis

366

Amino Acids

40.15

Weight (kDa)

8.54

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	31 - 345	1.5e-31	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13330
malus_domestica	MD13G1044000.v1.1 MD16G1044800.v1.1
prunus_persica	Prupe.1G308500_v2.0.a1
pyrus_communis	pycom13g03860 pycom16g03940
rosa_chinensis	RchiOBHm_Chr4g0435501
rosa_laevigata	RLG00000006587
rosa_multiflora	Rmu_co8451555.1_g000001 Rmu_sc0001940.1_g000029
rosa_roxburghii	Rroxscaffold_5G00376730
rosa_rugosa	Rorug04G0285700
rosa_samantha	Rh4AG341400 Rh4BG349600 Rh4CG364300 Rh4DG343900
rosa_wichuraiana	Rw4G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	224
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	673
AccII	CGCG	2 cut(s)	745, 893
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	4 cut(s)	745, 891, 900, 936
AcsI	RAATTY	4 cut(s)	26, 78, 339, 809
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	1033
AfaI	GTAC	2 cut(s)	8, 620
AfiI	CCNNNNNNNGG	2 cut(s)	170, 684
AgeI	ACCGGT	1 cut(s)	966
AgsI	TTSAA	3 cut(s)	116, 725, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	558, 590
AloI	GAACNNNNNNTCC	4 cut(s)	15, 47, 49, 81
AluBI	AGCT	5 cut(s)	290, 460, 473, 717, 763
AluI	AGCT	5 cut(s)	290, 460, 473, 717, 763
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	1040
AlwNI	CAGNNNCTG	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	562
ApeKI	GCWGC	2 cut(s)	449, 897
ApoI	RAATTY	4 cut(s)	26, 78, 339, 809
AsiGI	ACCGGT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	64
Asp718I	GGTACC	1 cut(s)	6
AspLEI	GCGC	2 cut(s)	745, 915
AspS9I	GGNCC	3 cut(s)	293, 659, 964
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	769, 1056
AvaII	GGWCC	3 cut(s)	293, 659, 964
BanI	GGYRCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	461, 884
BccI	CCATC	3 cut(s)	227, 634, 1005
BclI	TGATCA	2 cut(s)	157, 1020
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	1040
BfaI	CTAG	3 cut(s)	110, 740, 926
BfmI	CTRYAG	2 cut(s)	447, 764
BfoI	RGCGCY	1 cut(s)	916
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	450, 898
BlsI	GCNGC	2 cut(s)	451, 899
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	3 cut(s)	293, 659, 964
BmgT120I	GGNCC	3 cut(s)	293, 659, 964
BmiI	GGNNCC	3 cut(s)	8, 279, 940
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	376
BoxI	GACNNNNGTC	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	1036
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	1033
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	2 cut(s)	562, 966
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 684
Bse118I	RCCGGY	1 cut(s)	966
Bse1I	ACTGG	2 cut(s)	296, 527
BseAI	TCCGGA	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	160, 391, 997
BseLI	CCNNNNNNNGG	2 cut(s)	170, 684
BseMII	CTCAG	2 cut(s)	296, 996
BseNI	ACTGG	2 cut(s)	296, 527
BseRI	GAGGAG	2 cut(s)	255, 1076
BseXI	GCAGC	2 cut(s)	461, 884
BseYI	CCCAGC	1 cut(s)	942
Bsh1236I	CGCG	2 cut(s)	745, 893
BshNI	GGYRCC	1 cut(s)	6
BshTI	ACCGGT	1 cut(s)	966
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	3 cut(s)	195, 563, 967
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	2 cut(s)	170, 684
BsmAI	GTCTC	1 cut(s)	1040
BsmBI	CGTCTC	1 cut(s)	1040
BsmFI	GGGAC	1 cut(s)	1001
BsmI	GAATGC	1 cut(s)	886
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	562
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	157, 1020
BspACI	CCGC	4 cut(s)	745, 891, 900, 936
BspCNI	CTCAG	2 cut(s)	297, 997
BspEI	TCCGGA	1 cut(s)	562
BspFNI	CGCG	2 cut(s)	745, 893
BspLI	GGNNCC	3 cut(s)	8, 279, 940
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	966
BsrGI	TGTACA	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	296, 527
BssAI	RCCGGY	1 cut(s)	966
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	157, 1020
BssNAI	GTATAC	1 cut(s)	674
BssNI	GRCGYC	1 cut(s)	1033
BssT1I	CCWWGG	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	54, 618
Bst6I	CTCTTC	2 cut(s)	463, 482
BstACI	GRCGYC	1 cut(s)	1033
BstAUI	TGTACA	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	761, 895
BstDEI	CTNAG	4 cut(s)	305, 464, 972, 1005
BstENI	CCTNNNNNAGG	1 cut(s)	682
BstF5I	GGATG	3 cut(s)	160, 391, 997
BstFNI	CGCG	2 cut(s)	745, 893
BstH2I	RGCGCY	1 cut(s)	916
BstHHI	GCGC	2 cut(s)	745, 915
BstKTI	GATC	2 cut(s)	160, 1023
BstMAI	GTCTC	1 cut(s)	1040
BstMBI	GATC	2 cut(s)	157, 1020
BstMWI	GCNNNNNNNGC	1 cut(s)	890
BstPAI	GACNNNNGTC	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	447, 764
BstUI	CGCG	2 cut(s)	745, 893
BstV1I	GCAGC	2 cut(s)	461, 884
BstV2I	GAAGAC	1 cut(s)	426
BstZ17I	GTATAC	1 cut(s)	674
BtsCI	GGATG	3 cut(s)	160, 391, 997
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	761, 895
CaiI	CAGNNNCTG	1 cut(s)	244
CfoI	GCGC	2 cut(s)	745, 915
Cfr10I	RCCGGY	1 cut(s)	966
Cfr13I	GGNCC	3 cut(s)	293, 659, 964
CseI	GACGC	2 cut(s)	998, 1022
Csp6I	GTAC	2 cut(s)	7, 619
CspAI	ACCGGT	1 cut(s)	966
CviAII	CATG	2 cut(s)	933, 1069
CviQI	GTAC	2 cut(s)	7, 619
DdeI	CTNAG	4 cut(s)	305, 464, 972, 1005
DpnI	GATC	2 cut(s)	159, 1022
DpnII	GATC	2 cut(s)	157, 1020
DraI	TTTAAA	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	463, 482
EarI	CTCTTC	2 cut(s)	463, 482
Ecl136II	GAGCTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	3 cut(s)	293, 659, 964
Eco53kI	GAGCTC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	682
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	1040
FaeI	CATG	2 cut(s)	936, 1072
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	2 cut(s)	932, 1068
FauNDI	CATATG	1 cut(s)	868
FbaI	TGATCA	2 cut(s)	157, 1020
FblI	GTMKAC	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	450, 898
FokI	GGATG	3 cut(s)	147, 398, 984
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	2 cut(s)	450, 898
FspBI	CTAG	3 cut(s)	110, 740, 926
GlaI	GCGC	2 cut(s)	744, 914
GluI	GCNGC	2 cut(s)	450, 898
GsaI	CCCAGC	1 cut(s)	946
GsuI	CTGGAG	1 cut(s)	1036
HaeII	RGCGCY	1 cut(s)	916
HapII	CCGG	3 cut(s)	195, 563, 967
HgaI	GACGC	2 cut(s)	998, 1022
HhaI	GCGC	2 cut(s)	745, 915
Hin1I	GRCGYC	1 cut(s)	1033
Hin1II	CATG	2 cut(s)	936, 1072
Hin6I	GCGC	2 cut(s)	743, 913
HinP1I	GCGC	2 cut(s)	743, 913
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	5 cut(s)	104, 142, 201, 241, 594
HpaII	CCGG	3 cut(s)	195, 563, 967
HphI	GGTGA	2 cut(s)	769, 1056
Hpy166II	GTNNAC	3 cut(s)	261, 316, 674
Hpy188I	TCNGA	6 cut(s)	19, 185, 240, 306, 599, 1006
Hpy188III	TCNNGA	3 cut(s)	563, 710, 1098
Hpy8I	GTNNAC	3 cut(s)	261, 316, 674
HpyAV	CCTTC	2 cut(s)	14, 1011
HpyCH4III	ACNGT	2 cut(s)	54, 618
HpyCH4V	TGCA	9 cut(s)	50, 233, 389, 407, 449, 590, 632, 884, 1081
HpyF10VI	GCNNNNNNNGC	1 cut(s)	890
HpyF3I	CTNAG	4 cut(s)	305, 464, 972, 1005
Hsp92I	GRCGYC	1 cut(s)	1033
Hsp92II	CATG	2 cut(s)	936, 1072
HspAI	GCGC	2 cut(s)	743, 913
Kpn2I	TCCGGA	1 cut(s)	562
KpnI	GGTACC	1 cut(s)	10
Ksp22I	TGATCA	2 cut(s)	157, 1020
Kzo9I	GATC	2 cut(s)	157, 1020
LguI	GCTCTTC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	2 cut(s)	461, 884
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	3 cut(s)	110, 740, 926
MaeIII	GTNAC	3 cut(s)	139, 484, 775
MalI	GATC	2 cut(s)	159, 1022
MboI	GATC	2 cut(s)	157, 1020
MboII	GAAGA	7 cut(s)	225, 431, 469, 480, 649, 829, 1086
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	9 cut(s)	26, 78, 88, 174, 300, 339, 359, 622, 809
MlyI	GAGTC	2 cut(s)	136, 235
MroI	TCCGGA	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	3 cut(s)	251, 345, 543
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	3 cut(s)	195, 563, 967
MspR9I	CCNGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	886
MvnI	CGCG	2 cut(s)	745, 893
MwoI	GCNNNNNNNGC	1 cut(s)	890
NciI	CCSGG	1 cut(s)	196
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	2 cut(s)	157, 1020
NlaIII	CATG	2 cut(s)	936, 1072
NlaIV	GGNNCC	3 cut(s)	8, 279, 940
NmuCI	GTSAC	2 cut(s)	139, 775
PciSI	GCTCTTC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	104, 201, 594
PinAI	ACCGGT	1 cut(s)	966
PkrI	GCNGC	2 cut(s)	451, 899
PleI	GAGTC	2 cut(s)	136, 235
PpsI	GAGTC	2 cut(s)	136, 235
PpuMI	RGGWCCY	1 cut(s)	659
PshAI	GACNNNNGTC	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	942
PspN4I	GGNNCC	3 cut(s)	8, 279, 940
PspPI	GGNCC	3 cut(s)	293, 659, 964
PspPPI	RGGWCCY	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	8, 620
RsaNI	GTAC	2 cut(s)	7, 619
SacI	GAGCTC	1 cut(s)	475
SapI	GCTCTTC	1 cut(s)	463
SaqAI	TTAA	3 cut(s)	251, 345, 543
SatI	GCNGC	2 cut(s)	450, 898
Sau3AI	GATC	2 cut(s)	157, 1020
Sau96I	GGNCC	3 cut(s)	293, 659, 964
SchI	GAGTC	2 cut(s)	136, 235
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	2 cut(s)	447, 764
SinI	GGWCC	3 cut(s)	293, 659, 964
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	9 cut(s)	26, 78, 88, 174, 300, 339, 359, 622, 809
SsiI	CCGC	4 cut(s)	745, 891, 900, 936
SspI	AATATT	2 cut(s)	697, 1075
SspMI	CTAG	3 cut(s)	110, 740, 926
SstI	GAGCTC	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	54, 618
TasI	AATT	9 cut(s)	26, 78, 88, 174, 300, 339, 359, 622, 809
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	3 cut(s)	104, 201, 594
Tru1I	TTAA	3 cut(s)	251, 345, 543
Tru9I	TTAA	3 cut(s)	251, 345, 543
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	139, 775
TseI	GCWGC	2 cut(s)	449, 897
Tsp45I	GTSAC	2 cut(s)	139, 775
TspDTI	ATGAA	1 cut(s)	1085
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	3 cut(s)	293, 659, 964
XagI	CCTNNNNNAGG	1 cut(s)	682
XapI	RAATTY	4 cut(s)	26, 78, 339, 809
XmiI	GTMKAC	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	3 cut(s)	110, 740, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.