Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014541

Physical Location & Seq

Genomic Coordinates Forward (+)

30038502 .. 30040467

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G308500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTCCCAAATCCGATAGCACCGACGCTATCGTTCTCAGATACTTGAATGAGCAAAATAGGCCACTGAATTCTCAAAATGTGGCGGATGCATTACAAAAATACAACCTCAAAAAGGCAGCCATACAAAAAGCTCTGGATACTCTTGCTGATAATGGGAAGATTTCATTCAAGGAGTATGGTAAGCAGAAGGTATACCTTGCTCGGCAAGACCAACTTGACATTCCAAACAGTGAGGAGCTCAGCCGGATGAAGCAAGAAAATGAAAAACTGCAAGAACAGTTGGGTGAACAAAAGAGATCGATTAGCGAGGTTGAGGGAGAAATTAAAGCTTTGCAGTCAAATTTGACCCTGGAACAAATAAGGGAGAAAGAAGCCAAACTGACAAATGAGGTTAATGAAATGGAGGACAGATTGGAAAAATTGCGTGGAGGAGTTACCTTGGTCAAGCCAGAAGACCGCAAGGCAGTTGAGCAAATGGTCTATGAGAAAATAAGTCAATGGAGAAAGCGCAAAAGGATGTTCAAAGATCTGTGGGATTCTATTACTGAGAATTCACCTAAAGATGTCAAGGAATTTAAGGAGGAGATCGGGCTTGAATATGATGAAGATGTTGGTGTGAGTTTGCAGTCATATTGTGACCTGCTACAACGTGGCAAGAAGCGATCATCTGGTGACCTGCAACAACAGTGTGCAAAGCGGCCTCCACTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBPIP

Protein Analysis

239

Amino Acids

27.59

Weight (kDa)

6.53

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13330
malus_domestica	MD13G1044000.v1.1 MD16G1044800.v1.1
prunus_persica	Prupe.1G308500_v2.0.a1
pyrus_communis	pycom13g03860 pycom16g03940
rosa_chinensis	RchiOBHm_Chr4g0435501
rosa_laevigata	RLG00000006587
rosa_multiflora	Rmu_co8451555.1_g000001 Rmu_sc0001940.1_g000029
rosa_roxburghii	Rroxscaffold_5G00376730
rosa_rugosa	Rorug04G0285700
rosa_samantha	Rh4AG341400 Rh4BG349600 Rh4CG364300 Rh4DG343900
rosa_wichuraiana	Rw4G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	651, 687
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	3 cut(s)	86, 460, 700
AcsI	RAATTY	4 cut(s)	70, 343, 553, 575
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	49, 172, 526, 599
AjnI	CCWGG	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AleI	CACNNNNGTG	1 cut(s)	712
AluBI	AGCT	3 cut(s)	134, 241, 332
AluI	AGCT	3 cut(s)	134, 241, 332
Alw21I	GWGCWC	1 cut(s)	243
AoxI	GGCC	2 cut(s)	62, 701
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	4 cut(s)	70, 343, 553, 575
AspLEI	GCGC	1 cut(s)	513
AsuHPI	GGTGA	3 cut(s)	299, 549, 686
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	353
BciVI	GTATCC	1 cut(s)	133
BfuAI	ACCTGC	2 cut(s)	651, 687
BfuI	GTATCC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	2 cut(s)	120, 701
BlpI	GCTNAGC	1 cut(s)	242
BlsI	GCNGC	2 cut(s)	121, 702
Bme1390I	CCNGG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	695
Bpu1102I	GCTNAGC	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	351, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	351, 441
BseGI	GGATG	3 cut(s)	94, 255, 525
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	52, 256, 540
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	3 cut(s)	251, 447, 599
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	2 cut(s)	64, 703
BshVI	ATCGAT	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	2 cut(s)	64, 703
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	4 cut(s)	299, 529, 588, 665
Bsp1720I	GCTNAGC	1 cut(s)	242
BspACI	CCGC	3 cut(s)	86, 460, 700
BspANI	GGCC	2 cut(s)	64, 703
BspCNI	CTCAG	3 cut(s)	51, 255, 541
BspDI	ATCGAT	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	651, 687
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	2 cut(s)	351, 441
BssMI	GATC	4 cut(s)	299, 529, 588, 665
BssNAI	GTATAC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	441
Bst1107I	GTATAC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	3 cut(s)	233, 282, 690
BstDEI	CTNAG	3 cut(s)	38, 242, 549
BstEII	GGTNACC	1 cut(s)	674
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	3 cut(s)	94, 255, 525
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	4 cut(s)	302, 532, 591, 668
BstMBI	GATC	4 cut(s)	299, 529, 588, 665
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	353
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZ17I	GTATAC	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	64, 703
BsuTUI	ATCGAT	1 cut(s)	302
BtsCI	GGATG	3 cut(s)	94, 255, 525
BtsIMutI	CAGTG	3 cut(s)	65, 238, 695
BveI	ACCTGC	2 cut(s)	651, 687
CfoI	GCGC	1 cut(s)	513
ClaI	ATCGAT	1 cut(s)	302
CseI	GACGC	1 cut(s)	35
DdeI	CTNAG	3 cut(s)	38, 242, 549
DpnI	GATC	4 cut(s)	301, 531, 590, 667
DpnII	GATC	4 cut(s)	299, 529, 588, 665
EciI	GGCGGA	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	674
EcoRI	GAATTC	2 cut(s)	70, 553
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	441
FaiI	YATR	6 cut(s)	125, 180, 196, 486, 603, 634
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	120, 701
FokI	GGATG	3 cut(s)	101, 262, 532
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	120, 701
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	2 cut(s)	120, 701
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	2 cut(s)	64, 703
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	513
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	3 cut(s)	299, 549, 686
Hpy166II	GTNNAC	2 cut(s)	196, 290
Hpy188I	TCNGA	2 cut(s)	16, 41
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	196, 290
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	233, 282, 690
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	6 cut(s)	92, 274, 337, 628, 682, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	3 cut(s)	38, 242, 549
HpySE526I	ACGT	1 cut(s)	652
HspAI	GCGC	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	299, 529, 588, 665
LmnI	GCTCC	2 cut(s)	10, 238
LpnPI	CCDG	8 cut(s)	122, 260, 338, 365, 465, 656, 657, 692
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	3 cut(s)	436, 638, 674
MalI	GATC	4 cut(s)	301, 531, 590, 667
MboI	GATC	4 cut(s)	299, 529, 588, 665
MboII	GAAGA	3 cut(s)	172, 467, 620
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	6 cut(s)	70, 324, 343, 422, 553, 575
MnlI	CCTC	9 cut(s)	119, 229, 304, 310, 385, 400, 425, 577, 714
Mph1103I	ATGCAT	1 cut(s)	94
MseI	TTAA	3 cut(s)	327, 396, 579
MslI	CAYNNNNRTG	1 cut(s)	712
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	4 cut(s)	299, 529, 588, 665
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	638, 674
NsiI	ATGCAT	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	121, 702
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	351
PspEI	GGTNACC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	712
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	327, 396, 579
SatI	GCNGC	2 cut(s)	120, 701
Sau3AI	GATC	4 cut(s)	299, 529, 588, 665
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	712
Sse9I	AATT	6 cut(s)	70, 324, 343, 422, 553, 575
SsiI	CCGC	3 cut(s)	86, 460, 700
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	233, 282, 690
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	1 cut(s)	302
TasI	AATT	6 cut(s)	70, 324, 343, 422, 553, 575
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	327, 396, 579
Tru9I	TTAA	3 cut(s)	327, 396, 579
TscAI	CASTG	3 cut(s)	72, 238, 695
TseFI	GTSAC	2 cut(s)	638, 674
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	638, 674
TspDTI	ATGAA	5 cut(s)	156, 266, 279, 414, 621
TspRI	CASTG	3 cut(s)	72, 238, 695
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	4 cut(s)	70, 343, 553, 575
XmiI	GTMKAC	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.