Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451555.1

Orthogroup ID

OG0014541

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1684

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451555.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

gtctttgctcctcctccttccattttcaaagcgaaagccgaaggtttcagaagctttttcccgccaacaatggcgcccaaatccgataacacagaagcaatcgttctcagattcgtgaatgagcaaaataaaccactgaattctcaaaatgtggcggatgcgttgcaaaagttcaaccttaagaagacggcaatacagaaatcgctggatactcttgctgatggtggaaagatttcgttcaaggagtatggtaagcagaagatatacctggctcggcaagaccagtttgatattccaaacagtgaggagcttaaccagatgaaggatgcaaatgcgaagctgcaagaacagttggctgagcaaaagagggcaatcagcgaggtcgagggagagattaaagctttgcagtcaaatttgaccctggaacaaataaaggagaaagacaccaaactgagaaaggaggttatggaactggaagacaagttggacaaattgcgaggaggagttaccttggtcaaacctgaagaccgcaagattattgagcaaatgtactcggagaagataagtcagtggagaaagcgtaagaggatcttcaaagatctctgggacactataactgaaaattcacctaaagatatcaaggagttcaaggaagagcttgggcttgaatatgatgaagatgttggtgtgaatcttcagtcattcagtgacctgctgccaaagagtaagaagcggcctagaggctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBPIP

Protein Analysis

249

Amino Acids

28.78

Weight (kDa)

8.94

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13330
malus_domestica	MD13G1044000.v1.1 MD16G1044800.v1.1
prunus_persica	Prupe.1G308500_v2.0.a1
pyrus_communis	pycom13g03860 pycom16g03940
rosa_chinensis	RchiOBHm_Chr4g0435501
rosa_laevigata	RLG00000006587
rosa_multiflora	Rmu_co8451555.1_g000001 Rmu_sc0001940.1_g000029
rosa_roxburghii	Rroxscaffold_5G00376730
rosa_rugosa	Rorug04G0285700
rosa_samantha	Rh4AG341400 Rh4BG349600 Rh4CG364300 Rh4DG343900
rosa_wichuraiana	Rw4G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	720
AccB1I	GGYRCC	1 cut(s)	73
AciI	CCGC	4 cut(s)	62, 155, 529, 733
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	3 cut(s)	139, 412, 622
AcuI	CTGAAG	2 cut(s)	543, 680
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	6 cut(s)	28, 175, 241, 595, 649, 668
AjnI	CCWGG	2 cut(s)	267, 420
AluBI	AGCT	5 cut(s)	54, 310, 340, 401, 658
AluI	AGCT	5 cut(s)	54, 310, 340, 401, 658
AlwI	GGATC	1 cut(s)	596
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	2 cut(s)	340, 715
ApoI	RAATTY	3 cut(s)	139, 412, 622
Asp700I	GAANNNNTTC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	73
BbsI	GAAGAC	3 cut(s)	191, 483, 531
BbvI	GCAGC	2 cut(s)	327, 702
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	269, 422
BciVI	GTATCC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	720
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	3 cut(s)	341, 716, 734
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	3 cut(s)	342, 717, 735
Bme1390I	CCNGG	2 cut(s)	269, 422
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	269, 422
BmsI	GCATC	2 cut(s)	148, 316
BpiI	GAAGAC	3 cut(s)	191, 483, 531
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	420, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	283, 477
BseBI	CCWGG	2 cut(s)	269, 422
BseDI	CCNNGG	2 cut(s)	420, 510
BseGI	GGATG	2 cut(s)	163, 331
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	3 cut(s)	121, 348, 443
BseNI	ACTGG	2 cut(s)	283, 477
BseRI	GAGGAG	3 cut(s)	320, 513, 516
BseXI	GCAGC	2 cut(s)	327, 702
BshFI	GGCC	1 cut(s)	736
BshNI	GGYRCC	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	736
Bsp143I	GATC	2 cut(s)	588, 598
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	4 cut(s)	62, 155, 529, 733
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	3 cut(s)	120, 349, 444
BspLI	GGNNCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	720
BspPI	GGATC	1 cut(s)	596
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	283, 477
BssECI	CCNNGG	2 cut(s)	420, 510
BssMI	GATC	2 cut(s)	588, 598
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	269, 422
Bst4CI	ACNGT	2 cut(s)	302, 351
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	1 cut(s)	74
BstAFI	CTTAAG	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	107, 357, 452
BstF5I	GGATG	2 cut(s)	163, 331
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	591, 601
BstMBI	GATC	2 cut(s)	588, 598
BstNI	CCWGG	2 cut(s)	269, 422
BstSCI	CCNGG	2 cut(s)	267, 420
BstV1I	GCAGC	2 cut(s)	327, 702
BstV2I	GAAGAC	3 cut(s)	191, 483, 531
BstX2I	RGATCY	2 cut(s)	588, 598
BstYI	RGATCY	2 cut(s)	588, 598
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	736
BtsCI	GGATG	2 cut(s)	163, 331
BtsIMutI	CAGTG	4 cut(s)	134, 307, 575, 712
BveI	ACCTGC	1 cut(s)	720
CfoI	GCGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	550
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	3 cut(s)	107, 357, 452
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	2 cut(s)	590, 600
DpnII	GATC	2 cut(s)	588, 598
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	637
Eco57I	CTGAAG	2 cut(s)	543, 680
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	267, 420
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	510
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	510
FaiI	YATR	5 cut(s)	249, 265, 467, 614, 672
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	1 cut(s)	620
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	341, 716, 734
FokI	GGATG	2 cut(s)	170, 338
Fsp4HI	GCNGC	3 cut(s)	341, 716, 734
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	341, 716, 734
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	736
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HindIII	AAGCTT	2 cut(s)	52, 399
HinfI	GANTC	2 cut(s)	111, 691
HphI	GGTGA	1 cut(s)	618
Hpy188I	TCNGA	4 cut(s)	50, 85, 110, 556
Hpy188III	TCNNGA	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	27, 35, 316
HpyCH4III	ACNGT	2 cut(s)	302, 351
HpyCH4V	TGCA	4 cut(s)	166, 329, 343, 406
HpyF3I	CTNAG	3 cut(s)	107, 357, 452
Hsp92I	GRCGYC	1 cut(s)	74
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	588, 598
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	2 cut(s)	13, 307
Lsp1109I	GCAGC	2 cut(s)	327, 702
LweI	GCATC	2 cut(s)	148, 316
MaeI	CTAG	1 cut(s)	738
MaeIII	GTNAC	2 cut(s)	505, 707
MalI	GATC	2 cut(s)	590, 600
MboI	GATC	2 cut(s)	588, 598
MboII	GAAGA	9 cut(s)	196, 271, 488, 536, 571, 583, 665, 686, 689
MflI	RGATCY	2 cut(s)	588, 598
MluCI	AATT	4 cut(s)	139, 412, 491, 622
Mly113I	GGCGCC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	232
MseI	TTAA	3 cut(s)	180, 312, 396
MspCI	CTTAAG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	269, 422
MvaI	CCWGG	2 cut(s)	269, 422
NarI	GGCGCC	1 cut(s)	74
NdeII	GATC	2 cut(s)	588, 598
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	707
PciSI	GCTCTTC	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	111, 691
PkrI	GCNGC	3 cut(s)	342, 717, 735
PluTI	GGCGCC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	267, 420
PspGI	CCWGG	2 cut(s)	267, 420
PspN4I	GGNNCC	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	588, 598
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	180, 312, 396
SatI	GCNGC	3 cut(s)	341, 716, 734
Sau3AI	GATC	2 cut(s)	588, 598
ScrFI	CCNGG	2 cut(s)	269, 422
SfaNI	GCATC	2 cut(s)	148, 316
SfoI	GGCGCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	139, 412, 491, 622
SsiI	CCGC	4 cut(s)	62, 155, 529, 733
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	267, 420
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	302, 351
TaqI	TCGA	1 cut(s)	384
TasI	AATT	4 cut(s)	139, 412, 491, 622
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	2 cut(s)	111, 691
Tru1I	TTAA	3 cut(s)	180, 312, 396
Tru9I	TTAA	3 cut(s)	180, 312, 396
TscAI	CASTG	4 cut(s)	141, 307, 575, 712
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	2 cut(s)	340, 715
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	2 cut(s)	335, 690
TspRI	CASTG	4 cut(s)	141, 307, 575, 712
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	139, 412, 622
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.