Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015323

Physical Location & Seq

Genomic Coordinates Reverse (-)

4747186 .. 4748666

Gene Structure 1481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGCTAGTTGTGATTTGTGGGCAACCTTGTAGTGGTAAGTCAATAGCTGCAGTAACTTTAGCTGAAACATTGAAAGAGTCTGAAACGAAACAGAGTGTTAGGATCATCGATGAGGCTTCGTTTCATCTAGACCGCAACCAAAACTATGCTAACATGCCTGCTGAGAAGAATCTGAGAGGAAAGCTTAGGTCAGATGTTGATAGATCAGTTTCGACAGGCGAGATTGTTATTGTAGATTCCTTGAATAGTATCAAAGGTTACAGATATGAGCTATGGTGTATCGCTCGTGCTGCTGGGATTAGGTATTGTGTTGTTTATTGTGATGTAGATGAAGCTCATTGTAGGCAATGGAATAAGGAACGGAGTGATAGAGGTGAAGATGGATATGACGATGGTATATTCGAAGATCTGGTTAGAAGATTTGAGAAACCTGAGAGAAGAAACCGATGGGATTCACCTCTCTTTGAGCTATACCCTTCTCGTGAAGTTATAGACAAATCCTCTCCTGTGATTTTAGAGGCTGTGACTTATCTAACCAAGACTGTTGACTCCAAAACCCAAGATGTGAGAATTCTCCAACCAAGTATTGCCACTCAGGCTGCTAGATTTTCAGAAGCAAATTCTCTTTACGAGTTGGACAGAGCGACACAAGAAATCATCAACGCGATTGTGGAACAACAATCACTGGGCGCGGCTATAAGCAGAGTTACTCTTGGCAATGAACTACCTCCGATTGAAATCTGCAGACCGATTGGGCTACCGGAGCTAAGGAGGCTTCGAAGAACGTTTGTTAAATTGATGGGTCAATCGAGTCTAAGCGGTCCACCGTTACCAACTGATGCAGACAGTGCAAAGAGACGTTTTGTGGATTACTTGAACAGAGAGTTTGGAGGTAATAACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

302

Amino Acids

34.06

Weight (kDa)

5.93

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KTI12	PF08433	1 - 294	2.6e-87	Chromatin associated protein KTI12
AAA_33	PF13671	3 - 145	1.1e-13	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13870
fragaria_vesca	FvH4_4g30260 FvH4_4g30260
malus_domestica	MD16G1062500.v1.1
prunus_persica	Prupe.1G285000_v2.0.a1
pyrus_communis	pycom16g05460
rosa_chinensis	RchiOBHm_Chr4g0438561
rosa_laevigata	RLG00000006351
rosa_roxburghii	Rroxscaffold_5G00379570
rosa_rugosa	Rorug04G0311500
rosa_samantha	Rh4AG361900 Rh4BG373300 Rh4CG387200 Rh4DG368000
rosa_wichuraiana	Rw0G006660 Rw0G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	668, 695
AciI	CCGC	3 cut(s)	136, 695, 822
AclI	AACGTT	1 cut(s)	788
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	573, 622
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	76, 247, 740, 880
AluBI	AGCT	7 cut(s)	50, 65, 187, 274, 338, 472, 769
AluI	AGCT	7 cut(s)	50, 65, 187, 274, 338, 472, 769
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	50, 293, 602
ApoI	RAATTY	2 cut(s)	573, 622
AspLEI	GCGC	2 cut(s)	7, 695
AspS9I	GGNCC	1 cut(s)	824
AsuHPI	GGTGA	2 cut(s)	389, 450
AsuII	TTCGAA	2 cut(s)	405, 781
AvaII	GGWCC	1 cut(s)	824
BauI	CACGAG	2 cut(s)	288, 483
BbvI	GCAGC	3 cut(s)	37, 280, 589
BccI	CCATC	4 cut(s)	377, 389, 444, 796
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	3 cut(s)	8, 131, 606
BfmI	CTRYAG	2 cut(s)	51, 745
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	599
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	4 cut(s)	51, 294, 603, 696
BlsI	GCNGC	4 cut(s)	52, 295, 604, 697
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	824
BmrI	ACTGGG	1 cut(s)	698
BmsI	GCATC	1 cut(s)	832
BmuI	ACTGGG	1 cut(s)	698
Bpu10I	CCTNAGC	2 cut(s)	188, 770
Bpu14I	TTCGAA	2 cut(s)	405, 781
Bsa29I	ATCGAT	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	740
BsaWI	WCCGGW	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	693
Bse3DI	GCAATG	2 cut(s)	356, 727
Bse8I	GATNNNNATC	1 cut(s)	740
BseCI	ATCGAT	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	740
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	2 cut(s)	356, 727
BseMII	CTCAG	4 cut(s)	156, 167, 426, 611
BseNI	ACTGG	1 cut(s)	693
BseXI	GCAGC	3 cut(s)	37, 280, 589
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	2 cut(s)	668, 695
BshVI	ATCGAT	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	764
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	853
BsmBI	CGTCTC	1 cut(s)	853
Bsp119I	TTCGAA	2 cut(s)	405, 781
Bsp143I	GATC	3 cut(s)	105, 206, 409
BspACI	CCGC	3 cut(s)	136, 695, 822
BspCNI	CTCAG	4 cut(s)	157, 168, 427, 610
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	2 cut(s)	668, 695
BspMAI	CTGCAG	2 cut(s)	55, 749
BspPI	GGATC	1 cut(s)	113
BspT104I	TTCGAA	2 cut(s)	405, 781
BsrDI	GCAATG	2 cut(s)	356, 727
BsrI	ACTGG	1 cut(s)	693
BssMI	GATC	3 cut(s)	105, 206, 409
BssSI	CACGAG	2 cut(s)	288, 483
Bst2BI	CACGAG	2 cut(s)	288, 483
Bst4CI	ACNGT	3 cut(s)	547, 831, 851
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstBI	TTCGAA	2 cut(s)	405, 781
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	7 cut(s)	165, 176, 188, 435, 597, 770, 818
BstFNI	CGCG	2 cut(s)	668, 695
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 695
BstKTI	GATC	3 cut(s)	108, 209, 412
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	3 cut(s)	105, 206, 409
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 599, 766, 775, 851
BstNSI	RCATGY	1 cut(s)	160
BstSFI	CTRYAG	2 cut(s)	51, 745
BstUI	CGCG	2 cut(s)	668, 695
BstV1I	GCAGC	3 cut(s)	37, 280, 589
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	686, 856
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	2 cut(s)	7, 695
Cfr13I	GGNCC	1 cut(s)	824
ClaI	ATCGAT	1 cut(s)	111
CviAII	CATG	1 cut(s)	157
DdeI	CTNAG	7 cut(s)	165, 176, 188, 435, 597, 770, 818
DpnI	GATC	3 cut(s)	107, 208, 411
DpnII	GATC	3 cut(s)	105, 206, 409
Eco47I	GGWCC	1 cut(s)	824
EcoRI	GAATTC	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	853
FaeI	CATG	1 cut(s)	160
FaiI	YATR	9 cut(s)	150, 158, 270, 277, 390, 401, 475, 494, 701
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	51, 294, 603, 696
Fsp4HI	GCNGC	4 cut(s)	51, 294, 603, 696
FspBI	CTAG	3 cut(s)	8, 131, 606
GlaI	GCGC	2 cut(s)	6, 694
GluI	GCNGC	4 cut(s)	51, 294, 603, 696
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	1 cut(s)	764
HhaI	GCGC	2 cut(s)	7, 695
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	2 cut(s)	5, 693
HinP1I	GCGC	2 cut(s)	5, 693
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	6 cut(s)	80, 172, 239, 455, 551, 814
HpaII	CCGG	1 cut(s)	764
HphI	GGTGA	2 cut(s)	389, 450
Hpy166II	GTNNAC	2 cut(s)	550, 827
Hpy188I	TCNGA	5 cut(s)	85, 177, 196, 616, 735
Hpy188III	TCNNGA	2 cut(s)	131, 485
Hpy8I	GTNNAC	2 cut(s)	550, 827
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	3 cut(s)	547, 831, 851
HpyCH4IV	ACGT	2 cut(s)	788, 862
HpyCH4V	TGCA	4 cut(s)	53, 747, 845, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 599, 766, 775, 851
HpyF3I	CTNAG	7 cut(s)	165, 176, 188, 435, 597, 770, 818
HpySE526I	ACGT	2 cut(s)	788, 862
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	2 cut(s)	5, 693
Kzo9I	GATC	3 cut(s)	105, 206, 409
LmnI	GCTCC	1 cut(s)	766
LpnPI	CCDG	9 cut(s)	174, 204, 282, 398, 447, 522, 584, 674, 777
Lsp1109I	GCAGC	3 cut(s)	37, 280, 589
LweI	GCATC	1 cut(s)	832
MaeI	CTAG	3 cut(s)	8, 131, 606
MaeII	ACGT	2 cut(s)	788, 862
MaeIII	GTNAC	5 cut(s)	55, 260, 526, 709, 831
MalI	GATC	3 cut(s)	107, 208, 411
MboI	GATC	3 cut(s)	105, 206, 409
MboII	GAAGA	6 cut(s)	181, 392, 419, 432, 453, 795
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	3 cut(s)	573, 622, 797
MlyI	GAGTC	3 cut(s)	89, 545, 823
MmeI	TCCRAC	2 cut(s)	604, 618
MnlI	CCTC	9 cut(s)	109, 173, 368, 471, 514, 514, 741, 768, 887
MseI	TTAA	1 cut(s)	795
MspI	CCGG	1 cut(s)	764
MvnI	CGCG	2 cut(s)	668, 695
MwoI	GCNNNNNNNGC	5 cut(s)	293, 599, 766, 775, 851
NdeII	GATC	3 cut(s)	105, 206, 409
NlaIII	CATG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	160
NspV	TTCGAA	2 cut(s)	405, 781
PfeI	GAWTC	3 cut(s)	172, 239, 455
PkrI	GCNGC	4 cut(s)	52, 295, 604, 697
PleI	GAGTC	3 cut(s)	88, 545, 822
PpsI	GAGTC	3 cut(s)	88, 545, 822
Psp1406I	AACGTT	1 cut(s)	788
PspFI	CCCAGC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	824
PstI	CTGCAG	2 cut(s)	55, 749
PsuI	RGATCY	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	4 cut(s)	51, 294, 603, 696
Sau3AI	GATC	3 cut(s)	105, 206, 409
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	3 cut(s)	89, 545, 823
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	2 cut(s)	51, 745
SfuI	TTCGAA	2 cut(s)	405, 781
SinI	GGWCC	1 cut(s)	824
Sse9I	AATT	3 cut(s)	573, 622, 797
SsiI	CCGC	3 cut(s)	136, 695, 822
SspMI	CTAG	3 cut(s)	8, 131, 606
TaaI	ACNGT	3 cut(s)	547, 831, 851
TaiI	ACGT	2 cut(s)	791, 865
TaqI	TCGA	5 cut(s)	111, 215, 405, 781, 812
TaqII	GACCGA	1 cut(s)	766
TasI	AATT	3 cut(s)	573, 622, 797
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	3 cut(s)	172, 239, 455
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	2 cut(s)	693, 856
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	3 cut(s)	50, 293, 602
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	3 cut(s)	116, 348, 738
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	2 cut(s)	693, 856
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	2 cut(s)	573, 622
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	3 cut(s)	8, 131, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.