Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015323

Physical Location & Seq

Genomic Coordinates Reverse (-)

48712450 .. 48715037

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0311500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAAATTCTCTGCTCATCATCTGAATACGGGGGAAGTTTGAGTATCTTAGAGGCAAGGGTTGCGAATTTTGTAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTATCAAATCACACTTTTGCCCCCACTGATTTGAGAAGCTATTCTTCAGATTTTCTGCTTAGAGATAAATCGTTGGGGTCTGTGCCGTATGGTGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTGAAGCCAGAGACAAGATATTGCGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTATTAGTGTTCGTGGTGAACCTGGTCTTACTGTAACAGCAGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTACTAAACCAAAGACATGAGGTCGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCTTTAGAGAAAGGTTTGTGCCTTCGAGGAGTGGTGATGGTCTCCTAGTCCTGAAAGGGGAATCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

190

Amino Acids

19.97

Weight (kDa)

4.9

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13870
fragaria_vesca	FvH4_4g30260 FvH4_4g30260
malus_domestica	MD16G1062500.v1.1
prunus_persica	Prupe.1G285000_v2.0.a1
pyrus_communis	pycom16g05460
rosa_chinensis	RchiOBHm_Chr4g0438561
rosa_laevigata	RLG00000006351
rosa_roxburghii	Rroxscaffold_5G00379570
rosa_rugosa	Rorug04G0311500
rosa_samantha	Rh4AG361900 Rh4BG373300 Rh4CG387200 Rh4DG368000
rosa_wichuraiana	Rw0G006660 Rw0G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	2 cut(s)	6, 67
AcuI	CTGAAG	2 cut(s)	153, 327
AcyI	GRCGYC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	559
AhdI	GACNNNNNGTC	1 cut(s)	464
AjnI	CCWGG	3 cut(s)	91, 340, 388
AluBI	AGCT	3 cut(s)	162, 437, 473
AluI	AGCT	3 cut(s)	162, 437, 473
Alw26I	GTCTC	2 cut(s)	309, 548
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	6, 67
Asp700I	GAANNNNTTC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	277, 395, 548
BccI	CCATC	3 cut(s)	124, 430, 533
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	3 cut(s)	93, 342, 390
BcoDI	GTCTC	2 cut(s)	309, 548
BfaI	CTAG	2 cut(s)	279, 548
Bme1390I	CCNGG	3 cut(s)	93, 342, 390
BmeRI	GACNNNNNGTC	1 cut(s)	464
BmrFI	CCNGG	3 cut(s)	93, 342, 390
BmsI	GCATC	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
BseBI	CCWGG	3 cut(s)	93, 342, 390
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	309, 548
Bso31I	GGTCTC	1 cut(s)	548
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	451
BspPI	GGATC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	338
Bst2UI	CCWGG	3 cut(s)	93, 342, 390
Bst4CI	ACNGT	1 cut(s)	400
BstACI	GRCGYC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	3 cut(s)	49, 182, 438
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	309, 548
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	3 cut(s)	93, 342, 390
BstSCI	CCNGG	3 cut(s)	91, 340, 388
BtsCI	GGATG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	413
CseI	GACGC	1 cut(s)	346
CsiI	ACCWGGT	1 cut(s)	388
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	7 cut(s)	162, 282, 311, 413, 437, 473, 483
CviKI_1	RGCY	7 cut(s)	162, 282, 311, 413, 437, 473, 483
DdeI	CTNAG	3 cut(s)	49, 182, 438
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DrdI	GACNNNNNNGTC	1 cut(s)	274
DriI	GACNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	153, 327
EcoRII	CCWGG	3 cut(s)	91, 340, 388
FaeI	CATG	1 cut(s)	464
FaiI	YATR	5 cut(s)	213, 286, 288, 351, 462
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FatI	CATG	1 cut(s)	460
FokI	GGATG	1 cut(s)	91
FspBI	CTAG	2 cut(s)	279, 548
HgaI	GACGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	464
HinfI	GANTC	2 cut(s)	251, 563
HphI	GGTGA	3 cut(s)	277, 395, 548
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	6 cut(s)	25, 109, 172, 250, 441, 470
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	534
HpyCH4III	ACNGT	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	49, 182, 438
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	464
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	470
LweI	GCATC	1 cut(s)	349
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	2 cut(s)	279, 548
MaeIII	GTNAC	4 cut(s)	95, 120, 265, 400
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	159, 311
MluCI	AATT	4 cut(s)	6, 67, 85, 568
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	3 cut(s)	46, 457, 522
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	1 cut(s)	571
MspR9I	CCNGG	3 cut(s)	93, 342, 390
MvaI	CCWGG	3 cut(s)	93, 342, 390
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	464
NmuCI	GTSAC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	251, 563
Psp6I	CCWGG	3 cut(s)	91, 340, 388
PspGI	CCWGG	3 cut(s)	91, 340, 388
PsrI	GAACNNNNNNTAC	2 cut(s)	229, 261
PstNI	CAGNNNCTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	571
Sau3AI	GATC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	93, 342, 390
SetI	ASST	6 cut(s)	164, 391, 439, 468, 475, 518
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	4 cut(s)	6, 67, 85, 568
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	279, 548
StyD4I	CCNGG	3 cut(s)	91, 340, 388
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	6, 67, 85, 568
TfiI	GAWTC	2 cut(s)	251, 563
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspRI	CASTG	1 cut(s)	154
XapI	RAATTY	2 cut(s)	6, 67
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	2 cut(s)	279, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.