Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015323

Physical Location & Seq

Genomic Coordinates Reverse (-)

67086543 .. 67087451

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCATTAGTTGTGATTTGTGGGCAACCCTGCAGTGGGAAGTCAATGGCTGCCGTCTGCCTAGCTGAGGCTCTCAAAGAATCCGGGTCGAATCATACTGTCAGGGTTATTGATGAAACTTCCTTTCATCTTGACCGCAATCAGAGCTATGCCAATATGCCTGCGGAGAAGAATTTAAGAGGGGTGCTGAGATCTGAAGTTGATAGATCGGTGTCAAGAGACAGTATCATAATTGTAGATTCTTTGAATAGCATCAAGGGTTATAGGTACGAGCTGTGGTGTTTGGCTCGTGCTGCAGGAATAAGGTATTGTGTGGTATATTGTGATGCTGATGAAACCCATTGTAGAAAATGGAATGAGGAGCGCAGGGAGAAGGGAGAAGATGCTTATGATGATAAGATTTTTGAAGATTTGGTAAGGAGATTTGAGACACCAGATAGAAGAAATCGGTGGGATTCCCCTTTGTTTGAGTTATGGCCACATAGAGAAGGTATAGTAGCATCTTCTGCTGCCATTCTAGATGCGATTTCGTATCTGACAAAGAAGGTAGACTCAAAGACACGGGATGTTAAAACTTTGCAGCCAACTATTGCAACACAGAACACACGGTTTTCTGAGGCAAACTCTCTGTATGAGTTGGACCGAGCTACACAGGAGGTGTCCAATGCAATTGTGGAAGCACAATCACAGGCACTTGGCGGACCTTTAAATGGAGTTTCTGTTGGTCAGGGGTTACCACCTATCAATATTTCTAGACCAGTAGGCCTTCCAGAGCTTCGAAGCTTGCGGCGAACTTTCATAAAATTGACAGGGCAAACGAGTTTAAGTGGGCGACCGCCACCTTCTGATGCAGACAGTGCAAAGAGGATGTTTGTTGATTACTTGAACAGGGAACTGGCAAATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

302

Amino Acids

33.78

Weight (kDa)

6.91

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KTI12	PF08433	1 - 296	2.4e-81	Chromatin associated protein KTI12
AAA_33	PF13671	3 - 145	4.4e-14	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13870
fragaria_vesca	FvH4_4g30260 FvH4_4g30260
malus_domestica	MD16G1062500.v1.1
prunus_persica	Prupe.1G285000_v2.0.a1
pyrus_communis	pycom16g05460
rosa_chinensis	RchiOBHm_Chr4g0438561
rosa_laevigata	RLG00000006351
rosa_roxburghii	Rroxscaffold_5G00379570
rosa_rugosa	Rorug04G0311500
rosa_samantha	Rh4AG361900 Rh4BG373300 Rh4CG387200 Rh4DG368000
rosa_wichuraiana	Rw0G006660 Rw0G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	5 cut(s)	136, 164, 699, 787, 836
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
AgsI	TTSAA	3 cut(s)	247, 407, 886
AluBI	AGCT	6 cut(s)	65, 147, 274, 647, 775, 783
AluI	AGCT	6 cut(s)	65, 147, 274, 647, 775, 783
Alw26I	GTCTC	2 cut(s)	213, 422
AoxI	GGCC	2 cut(s)	476, 763
ApeKI	GCWGC	4 cut(s)	50, 293, 509, 580
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	640, 701
AsuC2I	CCSGG	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	778
AvaII	GGWCC	2 cut(s)	640, 701
BalI	TGGCCA	1 cut(s)	478
BauI	CACGAG	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	37, 280, 496, 592
BceAI	ACGGC	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	213, 422
BfaI	CTAG	3 cut(s)	62, 518, 753
BfmI	CTRYAG	2 cut(s)	31, 294
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
BlsI	GCNGC	5 cut(s)	52, 295, 511, 582, 789
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	640, 701
BmgT120I	GGNCC	2 cut(s)	640, 701
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	6 cut(s)	261, 316, 373, 509, 511, 838
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
Bse1I	ACTGG	2 cut(s)	758, 900
BseGI	GGATG	2 cut(s)	571, 873
BseLI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BseMII	CTCAG	3 cut(s)	57, 179, 606
BseNI	ACTGG	2 cut(s)	758, 900
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	37, 280, 496, 592
Bsh1285I	CGRYCG	1 cut(s)	836
BshFI	GGCC	2 cut(s)	478, 765
BsiEI	CGRYCG	1 cut(s)	836
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BsmAI	GTCTC	2 cut(s)	213, 422
BsnI	GGCC	2 cut(s)	478, 765
Bsp119I	TTCGAA	1 cut(s)	778
Bsp143I	GATC	2 cut(s)	191, 206
BspACI	CCGC	5 cut(s)	136, 164, 699, 787, 836
BspANI	GGCC	2 cut(s)	478, 765
BspCNI	CTCAG	3 cut(s)	58, 180, 607
BspMAI	CTGCAG	2 cut(s)	35, 298
BspT104I	TTCGAA	1 cut(s)	778
BsrI	ACTGG	2 cut(s)	758, 900
BssMI	GATC	2 cut(s)	191, 206
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	100, 224, 609, 857
BstAPI	GCANNNNNTGC	2 cut(s)	506, 857
BstBI	TTCGAA	1 cut(s)	778
BstC8I	GCNNGC	2 cut(s)	162, 785
BstDEI	CTNAG	3 cut(s)	66, 188, 615
BstEII	GGTNACC	1 cut(s)	732
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	571, 873
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	194, 209
BstMAI	GTCTC	2 cut(s)	213, 422
BstMBI	GATC	2 cut(s)	191, 206
BstMCI	CGRYCG	1 cut(s)	836
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 293, 506, 857
BstPI	GGTNACC	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	2 cut(s)	31, 294
BstV1I	GCAGC	4 cut(s)	37, 280, 496, 592
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	478, 765
BtsCI	GGATG	2 cut(s)	571, 873
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 862
Cac8I	GCNNGC	2 cut(s)	162, 785
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	640, 701
Csp6I	GTAC	1 cut(s)	268
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	66, 188, 615
DpnI	GATC	2 cut(s)	193, 208
DpnII	GATC	2 cut(s)	191, 206
DraI	TTTAAA	1 cut(s)	708
EaeI	YGGCCR	1 cut(s)	476
EciI	GGCGGA	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	765
Eco47I	GGWCC	2 cut(s)	640, 701
Eco57I	CTGAAG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
FokI	GGATG	2 cut(s)	578, 880
Fsp4HI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
FspBI	CTAG	3 cut(s)	62, 518, 753
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
HaeIII	GGCC	2 cut(s)	478, 765
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	366
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	5 cut(s)	80, 91, 239, 455, 551
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	5 cut(s)	144, 196, 537, 616, 847
Hpy188III	TCNNGA	5 cut(s)	131, 216, 518, 753, 770
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	5 cut(s)	367, 482, 538, 776, 852
HpyCH4III	ACNGT	4 cut(s)	100, 224, 609, 857
HpyCH4V	TGCA	7 cut(s)	33, 296, 580, 593, 668, 851, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 293, 506, 857
HpyF3I	CTNAG	3 cut(s)	66, 188, 615
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	191, 206
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	4 cut(s)	37, 280, 496, 592
LweI	GCATC	6 cut(s)	261, 316, 373, 509, 511, 838
MaeI	CTAG	3 cut(s)	62, 518, 753
MaeIII	GTNAC	1 cut(s)	732
MalI	GATC	2 cut(s)	193, 208
MboI	GATC	2 cut(s)	191, 206
MboII	GAAGA	5 cut(s)	181, 392, 419, 453, 495
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	4 cut(s)	172, 231, 669, 803
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	6 cut(s)	61, 173, 352, 610, 649, 858
Mox20I	TGGCCA	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	4 cut(s)	176, 570, 707, 824
Msp20I	TGGCCA	1 cut(s)	478
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	669
MwoI	GCNNNNNNNGC	4 cut(s)	144, 293, 506, 857
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	191, 206
NspV	TTCGAA	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	765
PfeI	GAWTC	4 cut(s)	80, 91, 239, 455
PkrI	GCNGC	5 cut(s)	52, 295, 511, 582, 789
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PspEI	GGTNACC	1 cut(s)	732
PspPI	GGNCC	2 cut(s)	640, 701
PstI	CTGCAG	2 cut(s)	35, 298
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	176, 570, 707, 824
SatI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
Sau3AI	GATC	2 cut(s)	191, 206
Sau96I	GGNCC	2 cut(s)	640, 701
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	85
SfaNI	GCATC	6 cut(s)	261, 316, 373, 509, 511, 838
SfcI	CTRYAG	2 cut(s)	31, 294
SfuI	TTCGAA	1 cut(s)	778
SinI	GGWCC	2 cut(s)	640, 701
Sse9I	AATT	4 cut(s)	172, 231, 669, 803
SseBI	AGGCCT	1 cut(s)	765
SsiI	CCGC	5 cut(s)	136, 164, 699, 787, 836
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	62, 518, 753
StuI	AGGCCT	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	4 cut(s)	100, 224, 609, 857
TaqI	TCGA	2 cut(s)	89, 778
TaqII	GACCGA	1 cut(s)	657
TasI	AATT	4 cut(s)	172, 231, 669, 803
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	4 cut(s)	80, 91, 239, 455
Tru1I	TTAA	4 cut(s)	176, 570, 707, 824
Tru9I	TTAA	4 cut(s)	176, 570, 707, 824
TscAI	CASTG	2 cut(s)	40, 862
TseI	GCWGC	4 cut(s)	50, 293, 509, 580
TspDTI	ATGAA	4 cut(s)	116, 129, 348, 787
TspRI	CASTG	2 cut(s)	40, 862
VpaK11BI	GGWCC	2 cut(s)	640, 701
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	2 cut(s)	517, 752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	3 cut(s)	62, 518, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.