Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015323

Physical Location & Seq

Genomic Coordinates Forward (+)

28619043 .. 28621626

Gene Structure 2584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCATTGGTTGTAATCAGTGGACAACCCTGCAGTGGGAAGTCAATGGCTGCATTCTGCCTAGCTGAGGCTCTCAAAGAATCAGGATGCAACCTAACAGTCAGGGTTATTGATGAAACTTCCTTTCATCTTGACCACAACGAGAGCTATGCCAACATGCCTGCAGAGAAGAATTTAAGAGGAGTGCTGAGATCGGAAGTTGATAGATCGGTGTCGAAAGACAGTATCATAATAGTAGATTCTTTGAATAGCATCAAGGGTTACAGGTATGAGCTGTGGTGTTTGGCTCGTGCTGCAGGAATAAGATACTGTGTTTTATATTGTGATGCTGATGAAACCCATTGTAGAAAATGGAATGAAGAGCGCAGGGAGAAGGGAGAAGCTGCTTATAGTGATAAGATATTTGAAGATTTGATAAGAAGGTTTGAGACTCCAGATAGAAGAAATCGGTGGGATTCCCCATTGTTTGAGTTATGGCCACATAAAGAGGGAATAGAAAATACTTCTGCGGCCATTGTAGATGCTATTTCGTATTTGACAAAGAAGGCAGACTCAAAGTCACGGGATGTTAAAACTTTGCAGCCAACTATCGCAACACAGAATACAAGGTTTTCTGAGGCAAATTCTCTGTATGAGTTGGACAGAGCAACCCAGAAGGTGATCAATGCTATTGTGGAAGCACAATCCCAGGCACTTGGAGGGCCTTTAAATGGAGTTTCTGTTGGTCAGGGGTTACCACCTATCAATATTTCCAGAGCAGTAGGGCTTCCAGAGCTTCGTAGGCTGCGGCGAACTTTCATAAAATTGACGGCGCAAACGAGTTTAAGTGGGCCGCCTCCGCCTTCTGATGCAGACAATGCAAAAAGGATGTTTGTTGATTACTTGAACAGGGAACTGGAAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

303

Amino Acids

33.81

Weight (kDa)

6.91

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13870
fragaria_vesca	FvH4_4g30260 FvH4_4g30260
malus_domestica	MD16G1062500.v1.1
prunus_persica	Prupe.1G285000_v2.0.a1
pyrus_communis	pycom16g05460
rosa_chinensis	RchiOBHm_Chr4g0438561
rosa_laevigata	RLG00000006351
rosa_roxburghii	Rroxscaffold_5G00379570
rosa_rugosa	Rorug04G0311500
rosa_samantha	Rh4AG361900 Rh4BG373300 Rh4CG387200 Rh4DG368000
rosa_wichuraiana	Rw0G006660 Rw0G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	509, 787, 833, 839
AcoI	YGGCCR	2 cut(s)	476, 510
AcsI	RAATTY	2 cut(s)	172, 622
AfiI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
AgsI	TTSAA	3 cut(s)	247, 407, 886
AhdI	GACNNNNNGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	5 cut(s)	65, 147, 274, 383, 775
AluI	AGCT	5 cut(s)	65, 147, 274, 383, 775
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	4 cut(s)	476, 510, 701, 830
ApeKI	GCWGC	5 cut(s)	50, 293, 383, 580, 784
ApoI	RAATTY	2 cut(s)	172, 622
AspLEI	GCGC	2 cut(s)	366, 814
AspS9I	GGNCC	2 cut(s)	701, 830
AsuHPI	GGTGA	1 cut(s)	670
BalI	TGGCCA	1 cut(s)	478
BauI	CACGAG	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	5 cut(s)	37, 280, 370, 592, 771
BceAI	ACGGC	1 cut(s)	825
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	689
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	3 cut(s)	31, 162, 294
BisI	GCNGC	8 cut(s)	51, 294, 384, 510, 581, 785, 788, 833
BlsI	GCNGC	8 cut(s)	52, 295, 385, 511, 582, 786, 789, 834
Bme1390I	CCNGG	1 cut(s)	689
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	701, 830
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	5 cut(s)	77, 261, 316, 511, 838
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	687
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
Bse1I	ACTGG	1 cut(s)	900
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	687
BseGI	GGATG	3 cut(s)	92, 571, 873
BseLI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BseMII	CTCAG	3 cut(s)	57, 179, 606
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	5 cut(s)	37, 280, 370, 592, 771
BshFI	GGCC	4 cut(s)	478, 512, 703, 832
BslI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BsmAI	GTCTC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	4 cut(s)	478, 512, 703, 832
Bsp143I	GATC	3 cut(s)	191, 206, 660
BspACI	CCGC	4 cut(s)	509, 787, 833, 839
BspANI	GGCC	4 cut(s)	478, 512, 703, 832
BspCNI	CTCAG	3 cut(s)	58, 180, 607
BspMAI	CTGCAG	3 cut(s)	35, 166, 298
BspQI	GCTCTTC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	900
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	3 cut(s)	191, 206, 660
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	3 cut(s)	100, 224, 311
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	66, 188, 615
BstEII	GGTNACC	1 cut(s)	732
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	92, 571, 873
BstHHI	GCGC	2 cut(s)	366, 814
BstKTI	GATC	3 cut(s)	194, 209, 663
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	191, 206, 660
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 772, 781, 838, 857
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	3 cut(s)	31, 162, 294
BstV1I	GCAGC	5 cut(s)	37, 280, 370, 592, 771
BstXI	CCANNNNNNTGG	1 cut(s)	695
BsuRI	GGCC	4 cut(s)	478, 512, 703, 832
BtsCI	GGATG	3 cut(s)	92, 571, 873
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	25, 40
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	2 cut(s)	366, 814
Cfr13I	GGNCC	2 cut(s)	701, 830
CviAII	CATG	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	66, 188, 615
DpnI	GATC	3 cut(s)	193, 208, 662
DpnII	GATC	3 cut(s)	191, 206, 660
DraI	TTTAAA	1 cut(s)	708
DriI	GACNNNNNGTC	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	476, 510
Eam1104I	CTCTTC	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	828
Eco91I	GGTNACC	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	701
EcoO65I	GGTNACC	1 cut(s)	732
EcoRII	CCWGG	1 cut(s)	687
FaeI	CATG	1 cut(s)	160
FatI	CATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	8 cut(s)	51, 294, 384, 510, 581, 785, 788, 833
FokI	GGATG	3 cut(s)	99, 578, 880
Fsp4HI	GCNGC	8 cut(s)	51, 294, 384, 510, 581, 785, 788, 833
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	365, 813
GluI	GCNGC	8 cut(s)	51, 294, 384, 510, 581, 785, 788, 833
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	4 cut(s)	478, 512, 703, 832
HhaI	GCGC	2 cut(s)	366, 814
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	2 cut(s)	364, 812
HinP1I	GCGC	2 cut(s)	364, 812
HinfI	GANTC	5 cut(s)	80, 239, 430, 455, 551
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	196, 616, 847
Hpy188III	TCNNGA	5 cut(s)	84, 131, 434, 753, 770
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	367, 414, 538, 649, 852
HpyCH4III	ACNGT	3 cut(s)	100, 224, 311
HpyCH4V	TGCA	8 cut(s)	33, 53, 90, 164, 296, 580, 851, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 772, 781, 838, 857
HpyF3I	CTNAG	3 cut(s)	66, 188, 615
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	2 cut(s)	364, 812
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	191, 206, 660
LguI	GCTCTTC	1 cut(s)	354
Lsp1109I	GCAGC	5 cut(s)	37, 280, 370, 592, 771
LweI	GCATC	5 cut(s)	77, 261, 316, 511, 838
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	3 cut(s)	260, 558, 732
MalI	GATC	3 cut(s)	193, 208, 662
MboI	GATC	3 cut(s)	191, 206, 660
MboII	GAAGA	4 cut(s)	181, 371, 419, 453
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	3 cut(s)	172, 622, 803
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	2 cut(s)	424, 545
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	6 cut(s)	61, 173, 481, 610, 692, 846
Mox20I	TGGCCA	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	4 cut(s)	176, 570, 707, 824
Msp20I	TGGCCA	1 cut(s)	478
MspR9I	CCNGG	1 cut(s)	689
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	689
MwoI	GCNNNNNNNGC	5 cut(s)	293, 772, 781, 838, 857
NdeII	GATC	3 cut(s)	191, 206, 660
NlaIII	CATG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	558
NspI	RCATGY	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	815
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	80, 239, 455
PkrI	GCNGC	8 cut(s)	52, 295, 385, 511, 582, 786, 789, 834
PleI	GAGTC	2 cut(s)	424, 545
PpsI	GAGTC	2 cut(s)	424, 545
Psp6I	CCWGG	1 cut(s)	687
PspEI	GGTNACC	1 cut(s)	732
PspGI	CCWGG	1 cut(s)	687
PspPI	GGNCC	2 cut(s)	701, 830
PstI	CTGCAG	3 cut(s)	35, 166, 298
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	176, 570, 707, 824
SatI	GCNGC	8 cut(s)	51, 294, 384, 510, 581, 785, 788, 833
Sau3AI	GATC	3 cut(s)	191, 206, 660
Sau96I	GGNCC	2 cut(s)	701, 830
SchI	GAGTC	2 cut(s)	424, 545
ScrFI	CCNGG	1 cut(s)	689
SfaNI	GCATC	5 cut(s)	77, 261, 316, 511, 838
SfcI	CTRYAG	3 cut(s)	31, 162, 294
Sse9I	AATT	3 cut(s)	172, 622, 803
SsiI	CCGC	4 cut(s)	509, 787, 833, 839
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	687
TaaI	ACNGT	3 cut(s)	100, 224, 311
TaqI	TCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	172, 622, 803
TauI	GCSGC	3 cut(s)	512, 790, 835
TfiI	GAWTC	3 cut(s)	80, 239, 455
Tru1I	TTAA	4 cut(s)	176, 570, 707, 824
Tru9I	TTAA	4 cut(s)	176, 570, 707, 824
TscAI	CASTG	2 cut(s)	25, 40
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	5 cut(s)	50, 293, 383, 580, 784
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	5 cut(s)	116, 129, 348, 372, 787
TspRI	CASTG	2 cut(s)	25, 40
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	2 cut(s)	172, 622
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.